Sed0024531 (gene) Chayote v1

Overview


Name	Sed0024531
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Sm protein F
Location	LG10: 29500201 .. 29502650 (+)
RNA-Seq Expression	Sed0024531
Synteny	Sed0024531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAATCCCAATACCGGCCCATATATCCAATTCTCTCAGCTACCGTAACTCGCAGATGATCAACGAAAAGAGAAAACAAACCCTAGAGAGAGAAATATCGCCATTTTCATCGTCTCCTTGTTCTTTCAGATCATTTCGGAGCCATGGTATGCAAGAATTTTCATTTTTCTCGCTTTTCAAGCTACGATTCTTAGTCTTTTCTTACAAATTTTTCCTTCATTTTGCTTTGATTTGTAAATGGCGCTGTGTTCTTTAATTTGATTGTTTGGACATTGTAGAGCATTCCAGTTAACCCTAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGTTTTTCTTCTTTCTGCTGCTTGTTTTTTCTTGTTGTTTTTCTTCCTGTTGAATTTTGTACTGAGTTTTGTTTACATTCAGGCTTTCTTGTTTCGGTGGACTCGTACATGAACTTACAGGTGTGTTTCTACTTGCATTTCAAATAATTCAGTCCCGTTTGATAATCATTTGGTTTTTTATTTTTGGATTTTGAAATTTGAACATAACCTTGCCATATGATTTTTCTTACTTGTATATTTACATTTCACCCATATTTGTAGAATACAAACCAAAATCTAGAAAGAAAAAAAATAGCTTTCAAAAACAAAAACAAAATGGTTATCATTCACTTACTTTCTTAAAGAAAGATTGATACATTGTAGGAAAGGTGGAACACATGGTAGGAAATTTGAGTAAGAATAGGCTTAAATTTCAAAAATCAAAAACAAAAAACCAAATGGTTATCAAAGAGGGCCTGTTGTTCTTGTATGAGTTTGATCATTTTTTTGTTGTTTTTGAGTCTCCCTTTTCTGCAGGACTCTCTAGTTTACATTTTGGTGTCCAAAAATTGTTGACTGTAATGAATTTTAGCATTATGAGAAGGGAACTTAGTTTAATCATCGTTTTACTTGTACCAATTTTTCAAACGTAGCACCGACTGATTCAAAGTCCTTCATCTCTGAATCTAGCTCTATATGTTCTGTTTGTATTAGAAACTCCCTCTTTACGGATATTTATCATTTTCTGATTACTCACGACTTGGCTTCTTTGGAAAACTAGTTTGGAAACAATTGATCTCTTTTGTTTTTATGATTGTTTGAAAAGATACGATAGAGCGATGTTAAAATGTTGATATTTATTGTGCACATTGAAACTGATTTGCAAATGTTTCAATTTGGAAGGAATAATAAGTTCATTTGCTTTGAAAATATAAATTATCTAGTCCCCAAGGGTGGCCTCGTAGGTAGAGGATTGGACTCATTGGAGTCTACTAGGGATGCCCTCTTGGAGATCACAAATTCGAAACTTATGAGTGAGCTTAATTGTTCAATCTCTTGTCGTTCCATGGGTCTGAGTCTTGGGACGGGCGTGGATGCCCTCGGATATGTAGTGAGATAAAGTTATGATGCCCGGTTATATAAAAGAAAAAAGAAAGTTATAGATTAACTTTGTCCACGGTATCAAATTAAAAGATATAAGGAAAGCCAACTTTTTCTATGAACTTTTCTTTTAGAAAAACAGAAAACCAAAGACCATCACCCATGGTCTCTTTCAATGGCTGATTCTGGTGTTCAACTTTTTGAATGCAGCTTGCCAATACTGAGGAATATATTGATGGTCAATGTACTGGGAGTCTTGGAGAAATATTGATCAGGTAACCTTCTTCCAGTGACTGAAAATCGAAATATCATGCGCATCGATGCTTACTTGTCGGCATTGGTAATACAAGTTCCCTGTTCATCATATACATGCTGAAGAATAAGGTTGTGTTCATGCATGTGTTCTACAAGAACTAGTAAGGAGGATATGTCTAGTTGTTATCTAGTGTGCATGCTGGCCTTGGGAGGCTCCTTTCAAATTTGAAGCTTTGGTGCTTAACTGAGAATTCGTCTACAAGTTCTAACATCGATCACGACGACTTTCCTGCTTTTTTTTTGGCAGGTGCAATAATGTTCTTTACCTTCATGGAGTACCGGAGGATGAAGAAATCGAGGACGCCGAGCGTGACTAGCATGTAACTTTTTAGCAGCTCTCCCATGCCATAGTAGCAGTGAAGTATTCAGCCTTCTAGTTTTCTAGTTCTTCTTTCATCTGCTGATTAAGTTGTATCTTGTTGCTATTGATACTATGTAGCTATCTTAAAGGACAGGAACATTCTCTGCTTTGGTCGATTTCAAACCCGCGACAATCATTCGGTTTCCATTGTTGTGGTAGGGAGATCGAATGGTAGAAAAACAATTCTTGGAATGTAACATCTATATTTCATGATAGCATCGAATTGCCTTAGATTTTCAACCATGAGATATAGTTGAGCATTATATTATTCTTGCATGTCTGTGGAGTACAATGCAATGCGATGCATATATCTATAAAAAAATTTCGGG

mRNA sequence

CGCAATCCCAATACCGGCCCATATATCCAATTCTCTCAGCTACCGTAACTCGCAGATGATCAACGAAAAGAGAAAACAAACCCTAGAGAGAGAAATATCGCCATTTTCATCGTCTCCTTGTTCTTTCAGATCATTTCGGAGCCATGAGCATTCCAGTTAACCCTAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGCTTTCTTGTTTCGGTGGACTCGTACATGAACTTACAGCTTGCCAATACTGAGGAATATATTGATGGTCAATGTACTGGGAGTCTTGGAGAAATATTGATCAGGTGCAATAATGTTCTTTACCTTCATGGAGTACCGGAGGATGAAGAAATCGAGGACGCCGAGCGTGACTAGCATGTAACTTTTTAGCAGCTCTCCCATGCCATAGTAGCAGTGAAGTATTCAGCCTTCTAGTTTTCTAGTTCTTCTTTCATCTGCTGATTAAGTTGTATCTTGTTGCTATTGATACTATGTAGCTATCTTAAAGGACAGGAACATTCTCTGCTTTGGTCGATTTCAAACCCGCGACAATCATTCGGTTTCCATTGTTGTGGTAGGGAGATCGAATGGTAGAAAAACAATTCTTGGAATGTAACATCTATATTTCATGATAGCATCGAATTGCCTTAGATTTTCAACCATGAGATATAGTTGAGCATTATATTATTCTTGCATGTCTGTGGAGTACAATGCAATGCGATGCATATATCTATAAAAAAATTTCGGG

Coding sequence (CDS)

ATGAGCATTCCAGTTAACCCTAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGCTTTCTTGTTTCGGTGGACTCGTACATGAACTTACAGCTTGCCAATACTGAGGAATATATTGATGGTCAATGTACTGGGAGTCTTGGAGAAATATTGATCAGGTGCAATAATGTTCTTTACCTTCATGGAGTACCGGAGGATGAAGAAATCGAGGACGCCGAGCGTGACTAG

Protein sequence

MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

Homology

[Close]

BLAST of Sed0024531 vs. NCBI nr
Match: XP_022961705.1 (probable small nuclear ribonucleoprotein F [Cucurbita moschata] >XP_022996693.1 probable small nuclear ribonucleoprotein F [Cucurbita maxima] >XP_023002564.1 probable small nuclear ribonucleoprotein F [Cucurbita maxima] >XP_023546841.1 probable small nuclear ribonucleoprotein F [Cucurbita pepo subsp. pepo] >KAG7029399.1 putative small nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.3 bits (456), Expect = 7.4e-42
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60

Query: 61 EILIRCNNVLYLHGVPEDEEIEDAERD 88
          EILIRCNNVLYL GVPEDEEIEDAERD
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]

BLAST of Sed0024531 vs. NCBI nr
Match: XP_022951684.1 (probable small nuclear ribonucleoprotein F [Cucurbita moschata] >XP_023538350.1 probable small nuclear ribonucleoprotein F [Cucurbita pepo subsp. pepo] >XP_023538351.1 probable small nuclear ribonucleoprotein F [Cucurbita pepo subsp. pepo] >KAG6585581.1 putative small nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020496.1 putative small nuclear ribonucleoprotein F [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60

Query: 61 EILIRCNNVLYLHGVPEDEEIEDAERD 88
          EILIRCNNVLYL GVPEDEE+EDAERD
Sbjct: 61 EILIRCNNVLYLRGVPEDEELEDAERD 87

[Close]

BLAST of Sed0024531 vs. NCBI nr
Match: KAG6598461.1 (Inositol-pentakisphosphate 2-kinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 178.3 bits (451), Expect = 2.8e-41
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60

Query: 61 EILIRCNNVLYLHGVPEDEEIEDAER 87
          EILIRCNNVLYL GVPEDEEIEDAER
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAER 86

[Close]

BLAST of Sed0024531 vs. NCBI nr
Match: XP_004146017.2 (probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_008463776.1 PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo] >XP_008463777.1 PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo] >XP_011654028.1 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_038897243.1 probable small nuclear ribonucleoprotein F [Benincasa hispida] >TYK27869.1 putative small nuclear ribonucleoprotein F [Cucumis melo var. makuwa] >KAE8649817.1 hypothetical protein Csa_012166 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60

Query: 61 EILIRCNNVLYLHGVPEDEEIEDAERD 88
          EILIRCNNVLYL GVPEDEEIEDAERD
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]

BLAST of Sed0024531 vs. NCBI nr
Match: XP_022144158.1 (probable small nuclear ribonucleoprotein F [Momordica charantia])

HSP 1 Score: 172.9 bits (437), Expect = 1.2e-39
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60

Query: 61 EILIRCNNVLYLHGVPEDEEIEDAERD 88
          EILIRCNNVLYL GVPEDEEIED ER+
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDVERE 87

[Close]

BLAST of Sed0024531 vs. ExPASy Swiss-Prot
Match: Q9SUM2 (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At4g30220 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.2e-40
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGE
Sbjct: 3  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 62

Query: 62 ILIRCNNVLYLHGVPEDEEIEDAERD 88
          ILIRCNNVLY+ GVPEDEE+EDA++D
Sbjct: 63 ILIRCNNVLYVRGVPEDEELEDADQD 88

[Close]

BLAST of Sed0024531 vs. ExPASy Swiss-Prot
Match: Q3T0Z8 (Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 8.5e-33
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLHGVPEDEE 81
          E+LIRCNNVLY+ GV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of Sed0024531 vs. ExPASy Swiss-Prot
Match: P62306 (Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.5e-33
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLHGVPEDEE 81
          E+LIRCNNVLY+ GV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of Sed0024531 vs. ExPASy Swiss-Prot
Match: P62307 (Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.5e-33
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLHGVPEDEE 81
          E+LIRCNNVLY+ GV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of Sed0024531 vs. ExPASy Swiss-Prot
Match: P62321 (Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 8.5e-33
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LG
Sbjct: 1  MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLG 60

Query: 61 EILIRCNNVLYLHGVPEDEE 81
          E+LIRCNNVLY+ GV E+EE
Sbjct: 61 EVLIRCNNVLYIRGVEEEEE 80

[Close]

BLAST of Sed0024531 vs. ExPASy TrEMBL
Match: A0A6J1KQT2 (Sm protein F OS=Cucurbita maxima OX=3661 GN=LOC111496373 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.6e-42
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60

Query: 61 EILIRCNNVLYLHGVPEDEEIEDAERD 88
          EILIRCNNVLYL GVPEDEEIEDAERD
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]

BLAST of Sed0024531 vs. ExPASy TrEMBL
Match: A0A6J1HD26 (Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111462396 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.6e-42
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60

Query: 61 EILIRCNNVLYLHGVPEDEEIEDAERD 88
          EILIRCNNVLYL GVPEDEEIEDAERD
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]

BLAST of Sed0024531 vs. ExPASy TrEMBL
Match: A0A6J1GJI4 (Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111454427 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.1e-42
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60

Query: 61 EILIRCNNVLYLHGVPEDEEIEDAERD 88
          EILIRCNNVLYL GVPEDEE+EDAERD
Sbjct: 61 EILIRCNNVLYLRGVPEDEELEDAERD 87

[Close]

BLAST of Sed0024531 vs. ExPASy TrEMBL
Match: A0A1S3CKH5 (Sm protein F OS=Cucumis melo OX=3656 GN=LOC103501840 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.7e-41
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60

Query: 61 EILIRCNNVLYLHGVPEDEEIEDAERD 88
          EILIRCNNVLYL GVPEDEEIEDAERD
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]

BLAST of Sed0024531 vs. ExPASy TrEMBL
Match: A0A5D3DWN8 (Sm protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00490 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.7e-41
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLG 60
          MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLG
Sbjct: 1  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLG 60

Query: 61 EILIRCNNVLYLHGVPEDEEIEDAERD 88
          EILIRCNNVLYL GVPEDEEIEDAERD
Sbjct: 61 EILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]

BLAST of Sed0024531 vs. TAIR 10
Match: AT4G30220.1 (small nuclear ribonucleoprotein F )

HSP 1 Score: 164.1 bits (414), Expect = 5.1e-41
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGE
Sbjct: 3  TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 62

Query: 62 ILIRCNNVLYLHGVPEDEEIEDAERD 88
          ILIRCNNVLY+ GVPEDEE+EDA++D
Sbjct: 63 ILIRCNNVLYVRGVPEDEELEDADQD 88

[Close]

BLAST of Sed0024531 vs. TAIR 10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F )

HSP 1 Score: 164.1 bits (414), Expect = 5.1e-41
Identity = 75/86 (87.21%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 2  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGE 61
          +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGE
Sbjct: 11 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 70

Query: 62 ILIRCNNVLYLHGVPEDEEIEDAERD 88
          ILIRCNNVLY+ GVPEDEE+EDA++D
Sbjct: 71 ILIRCNNVLYVRGVPEDEELEDADQD 96

[Close]

BLAST of Sed0024531 vs. TAIR 10
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 114.0 bits (284), Expect = 6.0e-26
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 27 MEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAER 86
          MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+ GVPEDEE+EDA++
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 60

Query: 87 D 88
          D
Sbjct: 61 D 61

[Close]

BLAST of Sed0024531 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-14
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRC 66
          P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 67 NNVLYL 73
          NNVLY+
Sbjct: 75 NNVLYI 80

[Close]

BLAST of Sed0024531 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-14
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRC 66
          P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 67 NNVLYL 73
          NNVLY+
Sbjct: 75 NNVLYI 80

The following BLAST results are available for this feature:

BLAST of Sed0024531 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961705.1	7.4e-42	98.85	probable small nuclear ribonucleoprotein F [Cucurbita moschata] >XP_022996693.1 ...	[more]
XP_022951684.1	1.3e-41	97.70	probable small nuclear ribonucleoprotein F [Cucurbita moschata] >XP_023538350.1 ...	[more]
KAG6598461.1	2.8e-41	98.84	Inositol-pentakisphosphate 2-kinase, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_004146017.2	1.4e-40	97.70	probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_0084...	[more]
XP_022144158.1	1.2e-39	95.40	probable small nuclear ribonucleoprotein F [Momordica charantia]	[more]

BLAST of Sed0024531 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUM2	7.2e-40	87.21	Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q3T0Z8	8.5e-33	78.75	Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2	[more]
P62306	8.5e-33	78.75	Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1	[more]
P62307	8.5e-33	78.75	Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1	[more]
P62321	8.5e-33	78.75	Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1	[more]

BLAST of Sed0024531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KQT2	3.6e-42	98.85	Sm protein F OS=Cucurbita maxima OX=3661 GN=LOC111496373 PE=3 SV=1	[more]
A0A6J1HD26	3.6e-42	98.85	Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111462396 PE=3 SV=1	[more]
A0A6J1GJI4	6.1e-42	97.70	Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111454427 PE=3 SV=1	[more]
A0A1S3CKH5	6.7e-41	97.70	Sm protein F OS=Cucumis melo OX=3656 GN=LOC103501840 PE=3 SV=1	[more]
A0A5D3DWN8	6.7e-41	97.70	Sm protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00490 P...	[more]

BLAST of Sed0024531 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30220.1	5.1e-41	87.21	small nuclear ribonucleoprotein F	[more]
AT4G30220.2	5.1e-41	87.21	small nuclear ribonucleoprotein F	[more]
AT2G14285.1	6.0e-26	85.25	Small nuclear ribonucleoprotein family protein	[more]
AT2G43810.1	4.1e-14	46.97	Small nuclear ribonucleoprotein family protein	[more]
AT2G43810.2	4.1e-14	46.97	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 9..74 e-value: 8.8E-26 score: 101.6
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 10..73 e-value: 9.1E-23 score: 79.7
None	No IPR available	PIRSF	PIRSF006609	snRNP_SmF	coord: 1..83 e-value: 5.2E-38 score: 126.8
None	No IPR available	GENE3D	2.30.30.100		coord: 1..77 e-value: 1.5E-35 score: 122.7
None	No IPR available	PANTHER	PTHR11021:SF0	SMALL NUCLEAR RIBONUCLEOPROTEIN F	coord: 2..83
IPR016487	Sm-like protein Lsm6/SmF	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	coord: 2..83
IPR034100	Small nuclear ribonucleoprotein F	CDD	cd01722	Sm_F	coord: 6..74 e-value: 6.37915E-48 score: 144.662
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 7..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024531.1	Sed0024531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding