Sed0024467 (gene) Chayote v1

Overview


Name	Sed0024467
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG03: 47383929 .. 47384174 (-)
RNA-Seq Expression	Sed0024467
Synteny	Sed0024467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCATCACGAGGTGCTTTGATTTTCATATATTTATTCTTGGTTGCCACATCATCTCTATCAACGGTAATAATGGCTTCTGAAACTCCAAGTTTGGCTCACAATTTGGACTCAGTCAAGAATTCAGGGGGAATGAAAGCAACACCAAAAGTGGAAAGCTCGGCTGTTCGAAGTTGCAAGCCTAAAGGACCAGTTCGATGGTCCGCTCCCAACCCGATTCGAAACCATATTCCTTTGTGTTAA

mRNA sequence

ATGACGTCATCACGAGGTGCTTTGATTTTCATATATTTATTCTTGGTTGCCACATCATCTCTATCAACGGTAATAATGGCTTCTGAAACTCCAAGTTTGGCTCACAATTTGGACTCAGTCAAGAATTCAGGGGGAATGAAAGCAACACCAAAAGTGGAAAGCTCGGCTGTTCGAAGTTGCAAGCCTAAAGGACCAGTTCGATGGTCCGCTCCCAACCCGATTCGAAACCATATTCCTTTGTGTTAA

Coding sequence (CDS)

ATGACGTCATCACGAGGTGCTTTGATTTTCATATATTTATTCTTGGTTGCCACATCATCTCTATCAACGGTAATAATGGCTTCTGAAACTCCAAGTTTGGCTCACAATTTGGACTCAGTCAAGAATTCAGGGGGAATGAAAGCAACACCAAAAGTGGAAAGCTCGGCTGTTCGAAGTTGCAAGCCTAAAGGACCAGTTCGATGGTCCGCTCCCAACCCGATTCGAAACCATATTCCTTTGTGTTAA

Protein sequence

MTSSRGALIFIYLFLVATSSLSTVIMASETPSLAHNLDSVKNSGGMKATPKVESSAVRSCKPKGPVRWSAPNPIRNHIPLC

Homology

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BLAST of Sed0024467 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 8  LIFIYLFLVATSSLSTVIMAS-----------------ETPSLAHNLDSVKNSGGMKATP 67
          L  I+  L+  SS ST+I  S                 + P  +++ D++    G KA P
Sbjct: 9  LTIIFFLLIVISSPSTIIATSRHMLALDTKESPPQPPMDKPPTSNDFDTLSLPNGTKAMP 68

Query: 68 KVESSAVRSCKPKGPVRWSAPNPIRNHIPLC 82
           +  SAVRSCKPKGPVRWS+P+PIRN++P+C
Sbjct: 69 PMPESAVRSCKPKGPVRWSSPSPIRNNLPIC 99

The following BLAST results are available for this feature:

BLAST of Sed0024467 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595583.1	2.9e-08	40.66	hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0024467 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0024467 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0024467 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024467.1	Sed0024467.1	mRNA