Sed0024456 (gene) Chayote v1

Overview


Name	Sed0024456
Type	gene
Organism	Sechium edule (Chayote v1)
Description	TLC domain-containing protein
Location	LG11: 25893287 .. 25896119 (+)
RNA-Seq Expression	Sed0024456
Synteny	Sed0024456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATCTCGGTCCAAGATTGGCGATGCCCGATTTGCCCTCTTGCTTCTAAGTCTTCACCATTTCAGGTAATTACAATTTCTATTGAAATGTCTTGAATCCTCCAATTGTTTTTAGATCTTCTGATGATTTCATTTGATTTCAATGTTTCAAACTTCTATGCATAGATATAATAACATGTTCAATATTGTTTTCGTGTCATGAAGTAAAATTCGATTATAGATCGATTTCGTATTTTAATCAACAATATTAAATGGTGGATGTGCTAGTCAGATGCAAACATTGGCAATGAGCTGCTCTTATTTGATTTATGATATGGTGTGTTGCTGCTTTGACAAGAAAGTGAGTATGGACAATACCATCCATCACTTGATTAGCATTTTTGGAATATATGCAGGCCTTGCTTATCAAAAGGTAACTTACTCCAACTCCTTTTTTCCAACATCATTATTATCATCTTTTCATTTTCTATACTCTGCTTACGTATATAGAATATATTGTCTGATCTTATAATATTTAGATGTTAAAGAAACGCATTGATAATTACTTTCTAGGCATGTAGTTATCATATATGGAACTATCACTTTTTAATTAATTAAGACACTTCTAACCACTAGGATACTTCATAATCACTAATATCATTATTGTGATCTTTGGAGTAAACGACTTTTTATTTTATAAACACGTAAGAGCAAATTATTAGAGGTTAATCTTGTTGGGAAAAAAACCTTTGTTATAATAACACGAATAAGCAAAAAAAAAAACTTCGAAATTAAAAAGAAGCAAAAAAATAGAAAGCTACAAAATTTACGTGAAAAAATTATAAAAATGGAGAATAAACTGTAGATTAAAAAAATTTCTGCTATGTGAAAAATTATTACAATCATACAAAAAAATTTCTCGATCCAAATACATAAGCACTCTCTTCAAAACTTATTTCTACCTCACACTCTTTGCCTCACCCTCCATAAGAGAATATAAAAGAAATTTAATCAGAAACAATATACCAAGTTTAAAGTATTTTTTTTACTGTGATACTTTGAAACCAAAGGCACATGTTTCTTTTATAGTGCTTGGAGTACACCGCTTCCTTACATCTTGTGACAATTTACTTCTAATATTTTACCAAAAATCCAACATATCAAATATTAAATAAAAGAGGAAATGAATTCAGATCATTGTGACTATTTACTAGAAGCTATCTTTACAATCAAATGTAATAGAGTCATATGGTTCTTTTTATAATATAAAGTCGAATTGTTATTTGTTTATATTAGTGGTTTTAGTTGTTGATTTACATAATTGTCCCATGTAGTGTGGGTCAGAGATGGTAGCAGCATTGTGGATGACAGAGATCTCAAGCCCCTTTCTCCATTTAAGGGAAATTCTCAAAGAAATTGGTTATAGAGGCACTGACCTTAATTTGGTAGCTGATGTAAGTCGGCTTTTAAATTCTTTTTTTCTTCTTCTTTTGTTTTTCTAAGAATTATATCATGAATTATCAAATTTAAAAATCATATTAAGGTGGAAAATTGAAACCTTTTATTTGAAGGACAAATTAAAACTTGCATCTGAATGTCATTACTCTGTATTTCTGTCATATTGTTTACTTAAACTTAAACAATAGCTGTTTCTGCTAATCTGAGCTTAACTCAATTAGGGGAAAAAAAATAGTTTACAAGTGAGATTGAGTAACCATTATGTTTGGCCTTTTCTTTTTTGCAAACAACTTAGAAAAAAATTCACTGAACAAAAGATTTTGTATATTAATGAATCAATGCCTTAATACACATCGAATTCGAGAATTCCATATAAGGCCAAACAAACTTCGTCAACACGATGATGGTCAACTTTGAAAATGGTTTGGGGAGTAATCTTTGGAGCAGGAAAATTACTGAGATACTAGACCCGCCAATGTTAAGAATGGGTAGTTTGAATCCATAACGGACTTAATTATAGTTTTCATTTTAAAACCAACACATTAGAAGTCTTTCATTCAACCAGTACACCACTCTTAAGTTATATCCAACAATCAACTTTCTATCATTTATCTGTCATGTCATGCCAAACTAGTCAAATATTTATATAACACACACCTACTATACTATTCACTTAGTAAGGAGCATTTTGGATAAAAAGAATGAAAATAATTTTAAGAGCATGAAAACATGAGAGAGAATACCTGCCGAAATAATTATCTATGTTTAGAATAAGGAGAATGATTATGAGAAGAATTGTTACCTATATATTTAGAGAGCATGAAATGATTATGGGAGAACCATTATTTATGTTTAGAGCGTAGAGAATGATTATGAAGAAACAAAATCGTTATTATAGAAGAGAATGAAAAGTACGAAGAAACAAAATCGTTATTATAGAAGAGAATGAAAAGTAGTTATGCAAAGAATGAGTTTATGAAGAGAATGAATAGTGATTATGGAGAGAATGAATATGGATTACAAAAAAAATGGTTGTCGATTTTCCAAGCGTGGGTAAGAGAATAATTCCCGCCATAAGTCAAACTAAATAACCAACAATAAAAATAATATAGCTACATCCAACCAGAACATAACTCTAATGACATCTTGTATAATTTGATAATAATGAGGTTACATATTAGAATCTTCCATGTAGTTAAATAAAAAATAATAATAAAGCTACAATAGTTATAAAAGTTTAAACTTTTGACATGTTTACTAACATGTCAACTACTTCAATCTTCAGGCCATGGGGCTGGGATTGCAGCTTGTTAGTGCCTACTGGTTTTACAAGATAGTGAGAATGGTGAGATTCAAACTCACAAACAGATCTGCATTGAAGAATAGTTAG

mRNA sequence

ATGGCTTCCATCTCGGTCCAAGATTGGCGATGCCCGATTTGCCCTCTTGCTTCTAAGTCTTCACCATTTCAGATGCAAACATTGGCAATGAGCTGCTCTTATTTGATTTATGATATGGTGTGTTGCTGCTTTGACAAGAAAGTGAGTATGGACAATACCATCCATCACTTGATTAGCATTTTTGGAATATATGCAGGCCTTGCTTATCAAAAGTGTGGGTCAGAGATGGTAGCAGCATTGTGGATGACAGAGATCTCAAGCCCCTTTCTCCATTTAAGGGAAATTCTCAAAGAAATTGGTTATAGAGGCACTGACCTTAATTTGGTAGCTGATGTAAGTCGGCTTTTAAATTCTTTTTTTCTTCTTCTTTTAATAAGGAGAATGATTATGAGAAGAATTGCCATGGGGCTGGGATTGCAGCTTGTTAGTGCCTACTGGTTTTACAAGATAGTGAGAATGGTGAGATTCAAACTCACAAACAGATCTGCATTGAAGAATAGTTAG

Coding sequence (CDS)

ATGGCTTCCATCTCGGTCCAAGATTGGCGATGCCCGATTTGCCCTCTTGCTTCTAAGTCTTCACCATTTCAGATGCAAACATTGGCAATGAGCTGCTCTTATTTGATTTATGATATGGTGTGTTGCTGCTTTGACAAGAAAGTGAGTATGGACAATACCATCCATCACTTGATTAGCATTTTTGGAATATATGCAGGCCTTGCTTATCAAAAGTGTGGGTCAGAGATGGTAGCAGCATTGTGGATGACAGAGATCTCAAGCCCCTTTCTCCATTTAAGGGAAATTCTCAAAGAAATTGGTTATAGAGGCACTGACCTTAATTTGGTAGCTGATGTAAGTCGGCTTTTAAATTCTTTTTTTCTTCTTCTTTTAATAAGGAGAATGATTATGAGAAGAATTGCCATGGGGCTGGGATTGCAGCTTGTTAGTGCCTACTGGTTTTACAAGATAGTGAGAATGGTGAGATTCAAACTCACAAACAGATCTGCATTGAAGAATAGTTAG

Protein sequence

MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISIFGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADVSRLLNSFFLLLLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRSALKNS

Homology

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BLAST of Sed0024456 vs. NCBI nr
Match: XP_004152683.2 (TLC domain-containing protein 5 isoform X1 [Cucumis sativus] >KGN62628.1 hypothetical protein Csa_022539 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 8.5e-63
Identity = 130/177 (73.45%), Postives = 146/177 (82.49%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +ASISVQ+WRCPICPLASKSS FQMQTL++SCSYLIYDMVCC FDKKVS+DNTIHHL+SI
Sbjct: 57  LASISVQNWRCPICPLASKSSSFQMQTLSVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSI 116

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADV-------- 120
            GI AGLAYQKCGSEMVAALW+TEISSPFLHLREILKEIGY+GTDLNL AD+        
Sbjct: 117 VGIAAGLAYQKCGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSF 176

Query: 121 SRLLNSFFL--LLLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRSALKNS 168
           +R++   +L  + L   +     AM LGLQLVSAYWFYKIVRM+RFKL NRS LK S
Sbjct: 177 ARMVGGPYLTYVTLFANVPFLIKAMALGLQLVSAYWFYKIVRMIRFKLNNRSTLKKS 233

[Close]

BLAST of Sed0024456 vs. NCBI nr
Match: XP_038886579.1 (TLC domain-containing protein 5-like [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-62
Identity = 130/177 (73.45%), Postives = 146/177 (82.49%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +ASISV++WRCPICPLAS+SSPFQMQTLA+SCSYLIYDMVCC FDKKVS+DNTIHHL+SI
Sbjct: 56  LASISVRNWRCPICPLASQSSPFQMQTLAVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSI 115

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADV-------- 120
            GI AG AYQKCGSEMVAALW+TEISSPFLHLREILKEIGY+GTDLNL AD+        
Sbjct: 116 VGIAAGFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSS 175

Query: 121 SRLLNSFFL--LLLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRSALKNS 168
           +R++   +L  + L   +     AM LGLQLVSAYWFYKIVRMVRFKL NR  LKNS
Sbjct: 176 ARMVGGPYLTYMTLTATVPFLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRLTLKNS 232

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BLAST of Sed0024456 vs. NCBI nr
Match: XP_008444752.1 (PREDICTED: transmembrane protein 136 [Cucumis melo] >KAA0065207.1 transmembrane protein 136 [Cucumis melo var. makuwa])

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-62
Identity = 130/177 (73.45%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +ASISVQ+WRCPICPLASKSS FQMQTL +SCSYLIYDMVCC FDKKVS+DNTIHHL+SI
Sbjct: 57  LASISVQNWRCPICPLASKSSSFQMQTLGVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSI 116

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADV-------- 120
            GI AG AYQKCGSEMVAALW+TEISSPFLHLREILKE GYRGTDLNL AD+        
Sbjct: 117 VGIAAGFAYQKCGSEMVAALWITEISSPFLHLREILKEFGYRGTDLNLAADIGFAVIFSF 176

Query: 121 SRLLNSFFL--LLLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRSALKNS 168
           +R++   +L  + L   +     AM LGLQLVSAYWFYKIVRM+RFKL NRS LKNS
Sbjct: 177 ARMVGGPYLTYMTLSANVPFLIKAMALGLQLVSAYWFYKIVRMIRFKLKNRSTLKNS 233

[Close]

BLAST of Sed0024456 vs. NCBI nr
Match: KAG7029404.1 (Transmembrane protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.6 bits (623), Expect = 6.1e-61
Identity = 127/178 (71.35%), Postives = 144/178 (80.90%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +ASISVQ+WRCPICPLAS++SPFQMQTLA++CSYLIYDMVCC FDKKV++DN IHHL+ I
Sbjct: 56  LASISVQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCI 115

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADVS-RLLNSF 120
            GI AG AYQKCGSEMVAALW+TEISSPFLHLREILKEIGYRGTDLNL AD+   ++ SF
Sbjct: 116 VGIAAGFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSF 175

Query: 121 ----------FLLLLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRSALKNS 168
                     ++ L    + +   AM LGLQLVSAYWFYKIVRMVRFKL NRS  KNS
Sbjct: 176 GRMVGGPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233

[Close]

BLAST of Sed0024456 vs. NCBI nr
Match: KAG6598466.1 (TLC domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244.2 bits (622), Expect = 8.0e-61
Identity = 126/178 (70.79%), Postives = 144/178 (80.90%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +ASISVQ+WRCPICPLAS++SPFQMQTLA++CSYLIYDMVCC FDKKV++DN IHHL+ I
Sbjct: 56  LASISVQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCI 115

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADVS-RLLNSF 120
            GI AG AYQKCGSEMVAALW+TEISSPFLHLREILKEIGYRGTDLNL AD+   ++ SF
Sbjct: 116 VGIAAGFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYRGTDLNLAADIGFAVIFSF 175

Query: 121 ----------FLLLLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRSALKNS 168
                     ++ L    + +   AM LGLQLVSAYWFYKIVRM+RFKL NRS  KNS
Sbjct: 176 GRMVGGPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMIRFKLNNRSTSKNS 233

[Close]

BLAST of Sed0024456 vs. ExPASy Swiss-Prot
Match: Q3TYE7 (TLC domain-containing protein 5 OS=Mus musculus OX=10090 GN=Tlcd5 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-08
Identity = 32/100 (32.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 2   ASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISIF 61
           A I   D   P     S ++P Q+  L ++  Y I+D+  C + +        HH +SI 
Sbjct: 52  AYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCIYFQSEGPLMLAHHTLSIL 111

Query: 62  GIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGY 102
           GI   LA  + G+E+ A L+ +EI++P L +R  L+E G+
Sbjct: 112 GIIMALALGESGTEVNAVLFGSEITNPLLQMRWFLRETGH 151

[Close]

BLAST of Sed0024456 vs. ExPASy Swiss-Prot
Match: Q0VD42 (TLC domain-containing protein 5 OS=Bos taurus OX=9913 GN=TLCD5 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 31/100 (31.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 2   ASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISIF 61
           A I   D   P     S ++P Q+  L ++  Y I+D+  C + +        HH +SI 
Sbjct: 52  AYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCIYFRSEGPLMLAHHTLSIL 111

Query: 62  GIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGY 102
           GI   L   + G+E+ A L+ +EI++P L +R  L+E G+
Sbjct: 112 GIIVALVLGESGTEVNAVLFGSEITNPLLQIRWFLRETGH 151

[Close]

BLAST of Sed0024456 vs. ExPASy Swiss-Prot
Match: Q6ZRR5 (TLC domain-containing protein 5 OS=Homo sapiens OX=9606 GN=TLCD5 PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 3.1e-07
Identity = 30/100 (30.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 2   ASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISIF 61
           A I   D   P     S ++P Q+  L ++  Y I+D+  C + +        HH +SI 
Sbjct: 52  AYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWCVYFQSEGALMLAHHTLSIL 111

Query: 62  GIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGY 102
           GI   L   + G+E+ A L+ +E+++P L +R  L+E G+
Sbjct: 112 GIIMALVLGESGTEVNAVLFGSELTNPLLQMRWFLRETGH 151

[Close]

BLAST of Sed0024456 vs. ExPASy Swiss-Prot
Match: Q1LXV8 (TLC domain-containing protein 5 OS=Danio rerio OX=7955 GN=tlcd5 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-07
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 12  PICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISIFGIYAGLAYQK 71
           P     ++++ FQ+ TL +S  Y ++DM  C + +        HH +SIFGI   L   +
Sbjct: 61  PFTHPGTENTYFQILTLVLSLGYFLFDMAWCVYFRTEGPVMLAHHTMSIFGILLALGLGE 120

Query: 72  CGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADVSRLLNSFFLLL 124
            G E  A L+ +EI++P L  R  LK +G      +L  DV  LL   F+LL
Sbjct: 121 SGIETCAVLFGSEITNPLLQARWFLKRMGCYD---SLAGDVVDLL---FILL 166

[Close]

BLAST of Sed0024456 vs. ExPASy TrEMBL
Match: A0A0A0LLI2 (TLC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G362410 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.1e-63
Identity = 130/177 (73.45%), Postives = 146/177 (82.49%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +ASISVQ+WRCPICPLASKSS FQMQTL++SCSYLIYDMVCC FDKKVS+DNTIHHL+SI
Sbjct: 57  LASISVQNWRCPICPLASKSSSFQMQTLSVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSI 116

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADV-------- 120
            GI AGLAYQKCGSEMVAALW+TEISSPFLHLREILKEIGY+GTDLNL AD+        
Sbjct: 117 VGIAAGLAYQKCGSEMVAALWITEISSPFLHLREILKEIGYKGTDLNLAADIGFAVIFSF 176

Query: 121 SRLLNSFFL--LLLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRSALKNS 168
           +R++   +L  + L   +     AM LGLQLVSAYWFYKIVRM+RFKL NRS LK S
Sbjct: 177 ARMVGGPYLTYVTLFANVPFLIKAMALGLQLVSAYWFYKIVRMIRFKLNNRSTLKKS 233

[Close]

BLAST of Sed0024456 vs. ExPASy TrEMBL
Match: A0A5A7VDR0 (Transmembrane protein 136 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005440 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.0e-63
Identity = 130/177 (73.45%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +ASISVQ+WRCPICPLASKSS FQMQTL +SCSYLIYDMVCC FDKKVS+DNTIHHL+SI
Sbjct: 57  LASISVQNWRCPICPLASKSSSFQMQTLGVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSI 116

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADV-------- 120
            GI AG AYQKCGSEMVAALW+TEISSPFLHLREILKE GYRGTDLNL AD+        
Sbjct: 117 VGIAAGFAYQKCGSEMVAALWITEISSPFLHLREILKEFGYRGTDLNLAADIGFAVIFSF 176

Query: 121 SRLLNSFFL--LLLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRSALKNS 168
           +R++   +L  + L   +     AM LGLQLVSAYWFYKIVRM+RFKL NRS LKNS
Sbjct: 177 ARMVGGPYLTYMTLSANVPFLIKAMALGLQLVSAYWFYKIVRMIRFKLKNRSTLKNS 233

[Close]

BLAST of Sed0024456 vs. ExPASy TrEMBL
Match: A0A1S3BB19 (transmembrane protein 136 OS=Cucumis melo OX=3656 GN=LOC103487998 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.0e-63
Identity = 130/177 (73.45%), Postives = 144/177 (81.36%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +ASISVQ+WRCPICPLASKSS FQMQTL +SCSYLIYDMVCC FDKKVS+DNTIHHL+SI
Sbjct: 57  LASISVQNWRCPICPLASKSSSFQMQTLGVSCSYLIYDMVCCHFDKKVSLDNTIHHLVSI 116

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADV-------- 120
            GI AG AYQKCGSEMVAALW+TEISSPFLHLREILKE GYRGTDLNL AD+        
Sbjct: 117 VGIAAGFAYQKCGSEMVAALWITEISSPFLHLREILKEFGYRGTDLNLAADIGFAVIFSF 176

Query: 121 SRLLNSFFL--LLLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRSALKNS 168
           +R++   +L  + L   +     AM LGLQLVSAYWFYKIVRM+RFKL NRS LKNS
Sbjct: 177 ARMVGGPYLTYMTLSANVPFLIKAMALGLQLVSAYWFYKIVRMIRFKLKNRSTLKNS 233

[Close]

BLAST of Sed0024456 vs. ExPASy TrEMBL
Match: A0A6J1K2K3 (transmembrane protein 136-like OS=Cucurbita maxima OX=3661 GN=LOC111491828 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60
Identity = 125/178 (70.22%), Postives = 143/178 (80.34%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +ASISVQ+WRCPICPLAS++SPFQMQTLA++CSYLIYDMVCC FDKKV++DN IHHL+SI
Sbjct: 56  LASISVQNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVSI 115

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVAD--------V 120
            GI AG AYQKCGSEMVAALW+TEISSPFLHLREILKEIGYRGTD NL AD        +
Sbjct: 116 VGIAAGFAYQKCGSEMVAALWITEISSPFLHLREILKEIGYRGTDFNLAADFGFAVIFSI 175

Query: 121 SRLLNS---FFLLLLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRSALKNS 168
            R++      ++ L    + +   AM LGLQLVSAYWFYKIVRMVRFKL +RS  KNS
Sbjct: 176 GRMVGGPYLTYMTLSATAVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNDRSTSKNS 233

[Close]

BLAST of Sed0024456 vs. ExPASy TrEMBL
Match: A0A6J1HDN8 (transmembrane protein 56-B-like OS=Cucurbita moschata OX=3662 GN=LOC111462571 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.2e-59
Identity = 125/178 (70.22%), Postives = 143/178 (80.34%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +ASISV++WRCPICPLAS++SPFQMQTLA++CSYLIYDMVCC FDKKV++DN IHHL+ I
Sbjct: 56  LASISVKNWRCPICPLASQASPFQMQTLAVTCSYLIYDMVCCHFDKKVNVDNAIHHLVCI 115

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADVS-RLLNSF 120
            GI AG AYQKCGSEMVAALW+TEISSPFLHLREILKEIG RGTDLNL AD+   ++ SF
Sbjct: 116 VGIAAGFAYQKCGSEMVAALWITEISSPFLHLREILKEIGDRGTDLNLAADIGFAVIFSF 175

Query: 121 ----------FLLLLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRSALKNS 168
                     ++ L    + +   AM LGLQLVSAYWFYKIVRMVRFKL NRS  KNS
Sbjct: 176 GRMVGGPYLTYMTLSATGVPLLIKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTSKNS 233

[Close]

BLAST of Sed0024456 vs. TAIR 10
Match: AT1G35180.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-50
Identity = 100/174 (57.47%), Postives = 131/174 (75.29%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +A++S+QDW CP+CP+AS SS  QM+TLA S SY+IYD++C  FD+ +S+DN +HH + I
Sbjct: 53  LATLSIQDWSCPVCPIASTSSLRQMETLAFSLSYMIYDLICSHFDQVLSIDNAVHHSVCI 112

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADV-------- 120
            G  AGL YQKCGSEMVAALW+TEISSPFLHLREILKEIGYR TDLNL ADV        
Sbjct: 113 LGFVAGLFYQKCGSEMVAALWITEISSPFLHLREILKEIGYRDTDLNLAADVCFATIFSL 172

Query: 121 SRLLNSFFLLLLI----RRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRS 163
           +R++   +L+ +       ++++  AM LGLQLVSA+WFYKI++M+R+K   RS
Sbjct: 173 ARMVGGPYLVYVTISADNPILIK--AMALGLQLVSAFWFYKILKMMRYKFIKRS 224

[Close]

BLAST of Sed0024456 vs. TAIR 10
Match: AT1G35170.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 183.0 bits (463), Expect = 2.0e-46
Identity = 97/173 (56.07%), Postives = 128/173 (73.99%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +A++S+QDW CP+CP+AS SS  QM+TLA S SY+IYD++C  FD+ +S+DN +HH + I
Sbjct: 53  LATLSIQDWSCPVCPIASTSSLRQMETLAFSLSYMIYDLICSHFDQVLSIDNAVHHSVCI 112

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVAD--------V 120
            G  AGL YQKCGSEMVAA+W+TEISSPFLHLREILKEIG R TDLNL AD        V
Sbjct: 113 LGFVAGLFYQKCGSEMVAAIWITEISSPFLHLREILKEIGCRDTDLNLAADVFFATIFSV 172

Query: 121 SRLLNSFFLLLL---IRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKLTNRS 163
           +R++   +L+ +       I+ ++ MGLGLQLVSA  FYK+++M+R+K   RS
Sbjct: 173 ARMVGGPYLVYVTIPADNPILIKV-MGLGLQLVSA--FYKLLKMMRYKFIKRS 222

[Close]

BLAST of Sed0024456 vs. TAIR 10
Match: AT1G45010.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 177.9 bits (450), Expect = 6.5e-45
Identity = 96/169 (56.80%), Postives = 119/169 (70.41%), Query Frame = 0


Query: 1   MASISVQDWRCPICPLASKSSPFQMQTLAMSCSYLIYDMVCCCFDKKVSMDNTIHHLISI 60
           +A++SVQD  CP+CPLASK S  QM  +A S SY+IYD++CC FD+  S+DN +HH +SI
Sbjct: 53  LATLSVQDLSCPVCPLASKPSHKQMDVMAFSLSYMIYDLICCHFDQVFSIDNAVHHFVSI 112

Query: 61  FGIYAGLAYQKCGSEMVAALWMTEISSPFLHLREILKEIGYRGTDLNLVADV-------- 120
            G  AGLAYQK GSE+VA LW+ EISSPF HLREILKEIGY+ T LNL ADV        
Sbjct: 113 LGFIAGLAYQKSGSEIVATLWVAEISSPFFHLREILKEIGYKDTKLNLAADVCFATIFTL 172

Query: 121 SRLLNSFFLL---LLIRRMIMRRIAMGLGLQLVSAYWFYKIVRMVRFKL 159
           +R++   FL+   L     I  + AMG GLQLVS +WFYKI  M+R+KL
Sbjct: 173 ARIVCGPFLVYVSLSADNPIFIK-AMGSGLQLVSIFWFYKIFGMMRYKL 220

The following BLAST results are available for this feature:

BLAST of Sed0024456 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152683.2	8.5e-63	73.45	TLC domain-containing protein 5 isoform X1 [Cucumis sativus] >KGN62628.1 hypothe...	[more]
XP_038886579.1	1.1e-62	73.45	TLC domain-containing protein 5-like [Benincasa hispida]	[more]
XP_008444752.1	1.5e-62	73.45	PREDICTED: transmembrane protein 136 [Cucumis melo] >KAA0065207.1 transmembrane ...	[more]
KAG7029404.1	6.1e-61	71.35	Transmembrane protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6598466.1	8.0e-61	70.79	TLC domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0024456 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3TYE7	8.1e-08	32.00	TLC domain-containing protein 5 OS=Mus musculus OX=10090 GN=Tlcd5 PE=2 SV=1	[more]
Q0VD42	1.4e-07	31.00	TLC domain-containing protein 5 OS=Bos taurus OX=9913 GN=TLCD5 PE=2 SV=1	[more]
Q6ZRR5	3.1e-07	30.00	TLC domain-containing protein 5 OS=Homo sapiens OX=9606 GN=TLCD5 PE=2 SV=2	[more]
Q1LXV8	4.0e-07	33.93	TLC domain-containing protein 5 OS=Danio rerio OX=7955 GN=tlcd5 PE=2 SV=1	[more]

BLAST of Sed0024456 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLI2	4.1e-63	73.45	TLC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G362410 PE=4 SV...	[more]
A0A5A7VDR0	7.0e-63	73.45	Transmembrane protein 136 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3BB19	7.0e-63	73.45	transmembrane protein 136 OS=Cucumis melo OX=3656 GN=LOC103487998 PE=4 SV=1	[more]
A0A6J1K2K3	1.5e-60	70.22	transmembrane protein 136-like OS=Cucurbita maxima OX=3661 GN=LOC111491828 PE=4 ...	[more]
A0A6J1HDN8	1.2e-59	70.22	transmembrane protein 56-B-like OS=Cucurbita moschata OX=3662 GN=LOC111462571 PE...	[more]

BLAST of Sed0024456 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G35180.1	1.0e-50	57.47	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT1G35170.1	2.0e-46	56.07	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT1G45010.1	6.5e-45	56.80	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 1..159 e-value: 6.1E-6 score: 35.7
IPR006634	TRAM/LAG1/CLN8 homology domain	PFAM	PF03798	TRAM_LAG1_CLN8	coord: 19..121 e-value: 2.3E-12 score: 47.1
IPR006634	TRAM/LAG1/CLN8 homology domain	PROSITE	PS50922	TLC	coord: 1..159 score: 25.755037
IPR042512	TLC domain-containing protein 5	PANTHER	PTHR31898	TRANSMEMBRANE PROTEIN 136	coord: 1..162
None	No IPR available	PANTHER	PTHR31898:SF5	SUBFAMILY NOT NAMED	coord: 1..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024456.1	Sed0024456.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane