Sed0024403 (gene) Chayote v1

Overview


Name	Sed0024403
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Peptide deformylase
Location	LG06: 4693671 .. 4698884 (-)
RNA-Seq Expression	Sed0024403
Synteny	Sed0024403

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGAATTTTTCGGGTTATCGGTTTTTTTGTACCCTACTTTACGTTATCCAAATTTGTAATACTGCCCCCATCTAGATTTTGCAATTCAACCCCCAGATAATTTCTCGTTATTTTTCTAATCCTTACAAAAATTACATTATTGCACAACTTTATGCCACAGCTGTCTTCTTCGCCATAGTTTCAACAGGCTTTCGTCGGCTCAGGTCCGCTCCTCATCGGTTCCCCGTCGGCGGCCATCCCGGCCAGTTTCCGCCAAGTTCCCGGCGGCCATGGCGTTCACTGCTCGGTTGCACCTTTCTCTCCCTCACGCTTTTCTTCACCCTGTATCCCGGCGGTCGGCTCTTCCCGCCGTCTTCCGCCGTCTCAGCCGATATTCCTCAACCGGAAAATTATTCTCCCATTCAAGCAAGTTCAGGTCTCCGACGACTCTGGTTTATGCGCAGGCCAAGCGAGGCTTCTCCGTTAAAGAAGACGATGTAGCTTCGTGTAAGCTTTTTAAAACTCTTTTTGTCGTCATTTCTTATAGATTTGTGTGATTTAGCTGATAAGATTGTGGTTTTTTAGCTGTGGATCTTGAATTTGAGGCGCCGCTCAAAATTGTGGAATATCCGGATCCTATACTCAGAGCAAAGAATAAGCGTATTGATTCCTTTGATGATAATCTCAAGAAGTTGGTTCAGGAAATGTTTGATGTAATGTATAAGTAAGTTTTTGAATAAATCTTTCCAGTTTACTTATTTATTCTTCTTAATATTTTCTTAGTACATTTCCTGTGAGCTCGGAAATTAGCATGGCAAGTAAACTATGAAATTTGTGATGAATTCAAAAGGAACATTGGTAACCTTGACTAAAAGAGGCATAATCTTTATATTGTTGAATTCAAAAAGAACATAGGTACTCTTGGTCGGATGGCTGAATTTGCTACTGAATCCAAATGCAACTCAACTTTGGTTATATAAGTTGGAACCATGGATTGTGTTCATAGACATTCTTCCATTGTTTTGTCGTCCTTGGATTGGTGCTTTCTTTGAAGGAGTTAGTTTAAGGATTTGCATCACCCATTTTCTATAAGGATGTTTGTTTATTCAGTCCCCATGAATCTGTTGGTTGGCTTCATTTAATAAGTGTTTGGGATGGTACGGTGGTCAAAGGCTTGGGTTTGAAGGTGTGCTTCCCTCAAGATCCCAAGTTCAAGACTGACATGTGACATTGTTTTGTAGACACCTCCCCTGTCTTCATTCCTTCAATGTCTCCTGATATCTGACCCAGGGACGGGCGTAATTACCCCAGGTATAGTGGAGCGAAACTCTGATTTACCGGTTTCTATAAAAATAAATAAGATTAAGTGTTTGGATTGGAATAGGGATTGTTATGGTATATGATTGAGGAGGTTCATATAGGGTTGCATTTTCCTGATAAAGGCAAAAGAGTAATACTTGGATTCTCACTAGTAAGGACTCAAGCCCTCCTTACCTACGTTGATAACCACACATTTAAGTCTGTTTTATCCATATTCTCGTAAACCTAAGAAAAAAAGGAAAAATGTGTGACTATCAATGTAGGTAAGGAGGACTTGGGTCCTTACTAGTAAGGACCCAAGTATTGCTCAAGGCAAAATGTCGTGGCATGCTAGCTTTCCCGCAATCTTGTGGAGAGTTCGAAACAAGTGAAAGAATAGAATTTTTAAGGAGGTTGAGATATCTTTGAAGACGCCTGGGAGTCGATGAGGTTTATTGCCTCTTTGTGGGTGTCGGTTACTAGGCCGTTTTGTAATAATGAGCATGGTCTGATTTTGTTGAACTAGAGTCCCTTTGTGTAGCTTTTGGGATTTTCTTTTACTTGAGCTTGTTTTATTTTATGCCTGTGTTTTTCATAGTTCTCTCGATTTCTTACCAAAAAGAAAGAAAATGGTCATGATCAGGTGATCAATGGAACTTTTAAGTTCTTGTTACAATGCAGAATGGTGAATTCTGAGTTAGGGCCATTATTACTTTGCTATTTACAGGAAAGTGAACATTACTTGTTGGCTTCATTCTCCACAGAACTGATGGTATTGGGCTCTCAGCGCCTCAAGTGGGAGTTAATGTACAACTGATGGTATTCAATCCTGTCGGTGAACGTGGTGAAGGAGAGGAAATCGTTCTTGTGAACCCACGAGTTAACAGATACTCCAAGAAAATTTTACTCTATGATGAAGGTTGCTTATCATTCCCAAAGATATATGGTGACGTAGAGGTACTATTGAATACTGGTTCTTGTCTCATGCGTACTTTCTTGTATAATGCTCATTGAGGATGGTGATGAATAACTTTTTCTGAACTTGATCTATTGTTTTCTTGGCTAATTTAAATTCCAATCGACCAAGTATTTAGTACACGTTCAGTCAAAGCTTGCAAAAGATAAATTTGTTCTAATGTATGGCGCGGTGGTCGAAGGCTTGGGCTTTTAAGGTGTGCTCTCCTTAAAGTCCTAAGTTCGAGACTCACCTGTCACTTAATTTGTAGATAGATAGATATTTATGTGTCTTCATTTCTTCGATGTCTCCCTGTGCCTGGCCCATGAACATGCATAATTACCCCGGGTATAGTGGAGCGAAACTCTGATTTCCCAAAAAAAAAGAAAATCTCAGAGGCTGAGATCTAACTTTTAAAATTATATGGACTGGATTCTAACTTTTTCCATATCATAGGACTAAATTTTAGTATAGTTTCTCTAGTTGCAAAACATTAAAACGATTCTGCTCTTAAAGACCATACAATTTCTAGCTCCCAAATTCTGTTTCTTATTCTTTGAGTTGCCATTGACGCGTGGCTAGCTCATTCTTTTCTAATTGCAGAGACCAGAATCAGTGAAAATCGATGCACGGGACATCAATGGCGCAAAGTTCATGGTCAACTTATCAGGGCTTCAAGCAAGAGTGTTCCAGCATGAATTTGACCATTTGCAGGTCTTTTAATTAGTTTAGTATTCAGTTATTATACACGACATTCCCTAATACATATCTAATTTAACTGGGCACACACATTTCTCCCTCACAATCTCTGTTCAACTGCTCAATGATCTTCTAGCAGTACATGGTTAAAGCAATCTAGATCCTGTACTAATATCCACCAAGCATTTGAGTTAGCTCACATTTTTTCTAAGAGTTCTGTTAAATTTGCAGGGAGTTTTGTTTTTCGACAGAATGACAGATGATGTACTTGATACCATTCGCCCTCAGCTGCAGGTGAGTATTGCTCATTGTTTTATCTTCTTTCTGGGCCAAAGTAATACTCTTGAACTATTGGGAGTGGCATACTGTAGTTTTTTTTAAACTTGTTTGATATCGGTCTAAAAGAACATCACTTTTTTTTTTTATAGGAAACAATACGGTATCTTCAATTATAAAATGAATAGAAAGTTCCCATCGAAACATGTTACAAAAAACATTTTCACTGAGCAATAAGTAGTGAGAGACTATAATCCCAAAATAGTGTAAGAGATGAACCCAATAAATAGCTAAATACAAAACAGATTCCAAAAATTTAATAGGAGTTAGAGCTATATCTTTGAAGACATTCAAGCCAAAGATTCCAGAGGAAACTAAAAGAACATGGCTCAGTGGACTTATTGATCTATGAGGGAATCTAAATAGGAAAAGGCTTGAAAGGAATGAGTTCAAGTCATGACCACCTATCTATTTAGGATTTAATACCATATAAGTATTTTTGCCAGCCAAATGTATTAGAGTTAGGTAGTTGTCTCGGAGAATAATCGATAGCACCGTATACTAACCCAAAGTATGTACATTGTTAACTAGTTAGGTGTGCAACTAGAGTCTCACATTGACTAGGAAAGAGAGAGTATATAAGTGAAAACAATTAACATGCAAACCTGTTAGTGGTACTCGCTCAAAACCAAAATTTAGAGCAACCAAAGTTACTATTCTTCCTAGATGGATTTGTGTCATCTTAGAAGTTGAATGATACTTTTCTTTACATGTCACTCCATCCCAATTCTCAAAAACAACTTTGAACAATAGTTGTTTGAATGGATTGGATGCAGAACAGTGTAAATTTTTACAAGTCATTCAATCCCAATTTCTTGGAGTGGCCGAGGATAGAATATACTCGACTGTAAAGGTTCCACATGATACTCTTAAGTTAGTTAAGGAGAGGAGTAAAATCAGCAAGACGGTGGTCAGAATTTTTTTTTTTTTTTTTTTTTTTTTATATCCGTGCACCTCGATTGTTGTCACGGGGCATACCGACCTACAACATTTGGATGTCAAGAAAACACGTAGGAAATTAATTTCTAGGTAGGTGGTCACTATGTTCAGAAATTACATATGAAAGACGGTAAAGGATCGGAGGAATAGGGCATTCCCGGTCTTACAGTGCATGAATGCAGCTGAAATTCAGATTGAATGGACATAGAGGGAACGAGGTCTAGTACCGTTTTACATCATAAAGTGGCTTAATGGTAACCATCATGAAGTGGCCTAGTGGTCAAAGAGGGTCTTAGAGTGCTAAAGGTGATGGATTCAATCCATGATGCCTACCTACCTAAAAAATAATTTTCTACGGGTTTCCTTGACAACCTAAATGTTGTAGGGTTAGGCGATATGTCCCGTAACATCAGTCGAGGTGTGCGCAAGCTCGCACGGACAGTCATGGATATATAAAAAAAAAGTGGTCTAATAGTCAAGAGAGTCCGAGGAAATTAAGAGGAGATGAATTCAATTTATGATAGTCACCTTCTTGAGATTAATTTTTTATGGGATTTCTTGAAATTCAAATATTGTAGGATTAGGTGGTATGTTCATGCGAACAATCAAAGTGCACGTAAGCTAGCCTAGCTCAATTTTAGGGACAATATTGACAATAAAACTCGAATGTCAGTCTCTTGAACATATATCATTTTCTGTTTTTCTTGTTGAGTTATGATTTTGTGATTTTGTGTTTTTTTTTATACAGGCCCTAGAAAAGAAGTACGAAGATAGAACTGGATTGCCAAGTCCGGAAAGAATAGAGAACTTTAGAACAAGGAAGGTGGCTGCTGGTTTTGGAAAATCATGATCATGGAGGTTTGATTATACATTAAGAATATGAATGCTACCAACTGCCAACTCTATTGAATTCTATGATAGAAAGAAATTTGATTTTGATAGTTTTGTGGTTTTTCTTTCCTTGAACCATATAATTAAAAAAAATGTACATTTTTTGTTTGTTAA

mRNA sequence

GTCCGAATTTTTCGGGTTATCGGTTTTTTTGTACCCTACTTTACGTTATCCAAATTTGTAATACTGCCCCCATCTAGATTTTGCAATTCAACCCCCAGATAATTTCTCGTTATTTTTCTAATCCTTACAAAAATTACATTATTGCACAACTTTATGCCACAGCTGTCTTCTTCGCCATAGTTTCAACAGGCTTTCGTCGGCTCAGGTCCGCTCCTCATCGGTTCCCCGTCGGCGGCCATCCCGGCCAGTTTCCGCCAAGTTCCCGGCGGCCATGGCGTTCACTGCTCGGTTGCACCTTTCTCTCCCTCACGCTTTTCTTCACCCTGTATCCCGGCGGTCGGCTCTTCCCGCCGTCTTCCGCCGTCTCAGCCGATATTCCTCAACCGGAAAATTATTCTCCCATTCAAGCAAGTTCAGGTCTCCGACGACTCTGGTTTATGCGCAGGCCAAGCGAGGCTTCTCCGTTAAAGAAGACGATGTAGCTTCGTCTGTGGATCTTGAATTTGAGGCGCCGCTCAAAATTGTGGAATATCCGGATCCTATACTCAGAGCAAAGAATAAGCGTATTGATTCCTTTGATGATAATCTCAAGAAGTTGGTTCAGGAAATGTTTGATGTAATGTATAAAACTGATGGTATTGGGCTCTCAGCGCCTCAAGTGGGAGTTAATGTACAACTGATGGTATTCAATCCTGTCGGTGAACGTGGTGAAGGAGAGGAAATCGTTCTTGTGAACCCACGAGTTAACAGATACTCCAAGAAAATTTTACTCTATGATGAAGGTTGCTTATCATTCCCAAAGATATATGGTGACGTAGAGAGACCAGAATCAGTGAAAATCGATGCACGGGACATCAATGGCGCAAAGTTCATGGTCAACTTATCAGGGCTTCAAGCAAGAGTGTTCCAGCATGAATTTGACCATTTGCAGGGAGTTTTGTTTTTCGACAGAATGACAGATGATGTACTTGATACCATTCGCCCTCAGCTGCAGGCCCTAGAAAAGAAGTACGAAGATAGAACTGGATTGCCAAGTCCGGAAAGAATAGAGAACTTTAGAACAAGGAAGGTGGCTGCTGGTTTTGGAAAATCATGATCATGGAGGTTTGATTATACATTAAGAATATGAATGCTACCAACTGCCAACTCTATTGAATTCTATGATAGAAAGAAATTTGATTTTGATAGTTTTGTGGTTTTTCTTTCCTTGAACCATATAATTAAAAAAAATGTACATTTTTTGTTTGTTAA

Coding sequence (CDS)

ATGGCGTTCACTGCTCGGTTGCACCTTTCTCTCCCTCACGCTTTTCTTCACCCTGTATCCCGGCGGTCGGCTCTTCCCGCCGTCTTCCGCCGTCTCAGCCGATATTCCTCAACCGGAAAATTATTCTCCCATTCAAGCAAGTTCAGGTCTCCGACGACTCTGGTTTATGCGCAGGCCAAGCGAGGCTTCTCCGTTAAAGAAGACGATGTAGCTTCGTCTGTGGATCTTGAATTTGAGGCGCCGCTCAAAATTGTGGAATATCCGGATCCTATACTCAGAGCAAAGAATAAGCGTATTGATTCCTTTGATGATAATCTCAAGAAGTTGGTTCAGGAAATGTTTGATGTAATGTATAAAACTGATGGTATTGGGCTCTCAGCGCCTCAAGTGGGAGTTAATGTACAACTGATGGTATTCAATCCTGTCGGTGAACGTGGTGAAGGAGAGGAAATCGTTCTTGTGAACCCACGAGTTAACAGATACTCCAAGAAAATTTTACTCTATGATGAAGGTTGCTTATCATTCCCAAAGATATATGGTGACGTAGAGAGACCAGAATCAGTGAAAATCGATGCACGGGACATCAATGGCGCAAAGTTCATGGTCAACTTATCAGGGCTTCAAGCAAGAGTGTTCCAGCATGAATTTGACCATTTGCAGGGAGTTTTGTTTTTCGACAGAATGACAGATGATGTACTTGATACCATTCGCCCTCAGCTGCAGGCCCTAGAAAAGAAGTACGAAGATAGAACTGGATTGCCAAGTCCGGAAAGAATAGAGAACTTTAGAACAAGGAAGGTGGCTGCTGGTTTTGGAAAATCATGA

Protein sequence

MAFTARLHLSLPHAFLHPVSRRSALPAVFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAKRGFSVKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYGDVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQLQALEKKYEDRTGLPSPERIENFRTRKVAAGFGKS

Homology

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BLAST of Sed0024403 vs. NCBI nr
Match: XP_022989167.1 (peptide deformylase 1B, chloroplastic [Cucurbita maxima])

HSP 1 Score: 485.3 bits (1248), Expect = 3.4e-133
Identity = 244/275 (88.73%), Postives = 260/275 (94.55%), Query Frame = 0


Query: 1   MAFTARLHLSLPHAFLHPVSRRSALPAVFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAK 60
           MA+TARLH+SLPHA L  +SRRSALPAV RRLSR+SSTG+L S+SSKFR PTTLVYAQAK
Sbjct: 1   MAYTARLHVSLPHALLPTLSRRSALPAVLRRLSRFSSTGRLLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSVKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDDVASS DLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYG 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V RYSKK +L++EGCLSFP+IY 
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTILFNEGCLSFPRIYA 180

Query: 181 DVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQL 240
           DV+RPESVKIDARDI+G +FMVNLSGL ARVFQHEFDHLQGVLFFDRMTD+VLDTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENFRTR-KVAAGFGKS 275
           QALEKKYEDRTGLPSPERIEN RTR KVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Sed0024403 vs. NCBI nr
Match: XP_022928203.1 (peptide deformylase 1B, chloroplastic [Cucurbita moschata])

HSP 1 Score: 485.0 bits (1247), Expect = 4.4e-133
Identity = 245/275 (89.09%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 1   MAFTARLHLSLPHAFLHPVSRRSALPAVFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAK 60
           MA+TARLHLSLPHA L  +SRRSALPAV RRLSR+SSTG+L S+SSKFR PTTLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPAVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSVKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDDVASS DLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYG 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V RYSKK +L++EGCLSFP IY 
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPSIYA 180

Query: 181 DVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQL 240
           DV+RPESVKIDARDI+G +FMVNLSGL ARVFQHEFDHLQGVLFFDRMTD+VLDTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENFRTR-KVAAGFGKS 275
           QALEKKYEDRTGLPSPERIEN RTR KVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Sed0024403 vs. NCBI nr
Match: XP_023530509.1 (peptide deformylase 1B, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 480.7 bits (1236), Expect = 8.3e-132
Identity = 243/275 (88.36%), Postives = 258/275 (93.82%), Query Frame = 0


Query: 1   MAFTARLHLSLPHAFLHPVSRRSALPAVFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAK 60
           MA+TARLHLSLPHA L  +SRRSALP V RRLSR+SSTG+L S+SSKFR PTTLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPTVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSVKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDDVASS DLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYG 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V RYSKK +L++EGCLSFP+IY 
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180

Query: 181 DVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQL 240
           DV+RPESVKIDARDI+G +FMVNLSGL ARVFQHEFDHLQGVLFFDRMTD+VLDTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENFRTR-KVAAGFGKS 275
           QALEKKYEDRTGL SPERIEN RTR KVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLRSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Sed0024403 vs. NCBI nr
Match: XP_038904020.1 (peptide deformylase 1B, chloroplastic [Benincasa hispida])

HSP 1 Score: 473.4 bits (1217), Expect = 1.3e-129
Identity = 237/274 (86.50%), Postives = 251/274 (91.61%), Query Frame = 0


Query: 1   MAFTARLHLSLPHAFLHPVSRRSALPAVFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAK 60
           M +T RLHLSL HA L  VSRR +LPAVFRRLS +  TGK FSH SKFR P+T+VYAQAK
Sbjct: 1   MEYTTRLHLSLQHALLPTVSRRLSLPAVFRRLSGFPLTGKFFSHWSKFRPPSTVVYAQAK 60

Query: 61  RGFSVKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDDVA SVDLEFEAPLKIVEYPD ILRAKNKRIDSFDDNLKKLV+EMFDVMYKT
Sbjct: 61  RGFSAKEDDVAKSVDLEFEAPLKIVEYPDKILRAKNKRIDSFDDNLKKLVREMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYG 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRV RYSKK +L++EGCLSFP IY 
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPMIYA 180

Query: 181 DVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQL 240
           DVERPESVKIDARDI+G +FM NLSGL ARVFQHEFDHLQG+LFFDRMTD+VLDTIRPQL
Sbjct: 181 DVERPESVKIDARDISGTRFMFNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENFRTRKVAAGFGKS 275
           QALEKKYED+TGLPSPERIENFRTRKVAAGFGKS
Sbjct: 241 QALEKKYEDKTGLPSPERIENFRTRKVAAGFGKS 274

[Close]

BLAST of Sed0024403 vs. NCBI nr
Match: XP_022152139.1 (peptide deformylase 1B, chloroplastic [Momordica charantia])

HSP 1 Score: 466.1 bits (1198), Expect = 2.1e-127
Identity = 235/273 (86.08%), Postives = 250/273 (91.58%), Query Frame = 0


Query: 1   MAFTARLHLSLPHAFLHPVSRRSALPAVFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAK 60
           MA+TARLHLSL HA L P  RR ALPAVFRRLS +SST + FSHSSK R P+TLVYAQAK
Sbjct: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60

Query: 61  RGFSVKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDD A S DLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSAKEDDAALSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYG 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRV RYSKK +L++EGCLSFP+IY 
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180

Query: 181 DVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQL 240
           DVERPESVKIDARDI+G +FMVNLSGL ARVFQHEFDHLQG+LFFDRMTD+VLDTIR QL
Sbjct: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240

Query: 241 QALEKKYEDRTGLPSPERIENFRT-RKVAAGFG 273
           QALEKKYE+RTGLPSPERIENFRT +KVAAG+G
Sbjct: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 273

[Close]

BLAST of Sed0024403 vs. ExPASy Swiss-Prot
Match: Q9FV54 (Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1B PE=2 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 8.2e-98
Identity = 180/263 (68.44%), Postives = 212/263 (80.61%), Query Frame = 0


Query: 15  FLHPVSRRSALPA-VFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAKRGFS--VKEDDVA 74
           FL P+  R++ P+ +   L RY S   LF  +S  + P   VYAQA+R  S   K D++A
Sbjct: 17  FLRPLLSRNSSPSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQARRVLSSKTKGDEIA 76

Query: 75  SSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVG 134
           +  DL F  PLKIVEYPDPILRAKNKRID+FD NLKKLV EMFD+MYKTDGIGLSAPQVG
Sbjct: 77  TPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVG 136

Query: 135 VNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYGDVERPESVKID 194
           +NVQLMVFN  GERGEGEEIVLVNPRV+RYS++I+ Y+EGCLSFP I+GDV+RPESVK+D
Sbjct: 137 MNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVD 196

Query: 195 ARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQLQALEKKYEDRT 254
           A+DING +F ++LS L ARVFQHEFDHLQGVLFFD+MTD+VLDTIR +L ALEKKYEDRT
Sbjct: 197 AQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEVLDTIREKLVALEKKYEDRT 256

Query: 255 GLPSPERIENFRTRKVAAGFGKS 275
           GLP+PE I   + +K A GFGKS
Sbjct: 257 GLPTPESINTRKIKKAAVGFGKS 279

[Close]

BLAST of Sed0024403 vs. ExPASy Swiss-Prot
Match: Q9FUZ2 (Peptide deformylase 1B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PDF1B PE=1 SV=2)

HSP 1 Score: 329.3 bits (843), Expect = 4.1e-89
Identity = 168/263 (63.88%), Postives = 202/263 (76.81%), Query Frame = 0


Query: 18  PVSRRSALPAVFRRLS-------RYSSTGKLFSHSSKFRSPTTLVYAQAKRGFSVKEDDV 77
           P   R  LP + RR +       R  ST    S  ++    T+ V A+ KR  S K+D V
Sbjct: 11  PPLSRILLPVLSRRATTLSAGYGRLKSTVTFCSTVNRTSPLTSSVRAEVKR-VSRKDDKV 70

Query: 78  ASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQV 137
           AS+ D++FE PLKIVEYPDPILRAKNKRID FD+NLK LV  MFDVMYKTDGIGLSAPQV
Sbjct: 71  ASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQV 130

Query: 138 GVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYGDVERPESVKI 197
           G+NVQLMVFNP GE GEG+EIVLVNP++ +YS K++ +DEGCLSFP IY +V RP+SVKI
Sbjct: 131 GLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKI 190

Query: 198 DARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQLQALEKKYEDR 257
           DARDI G +F ++LS L AR+FQHE+DHL+GVLFFDRMTD VLD+IR +L+ALEKKYE++
Sbjct: 191 DARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYEEK 250

Query: 258 TGLPSPERIENFRTRKVAAGFGK 274
           TGLPSPER+E  + RK   GFGK
Sbjct: 251 TGLPSPERVEARQKRKAGVGFGK 272

[Close]

BLAST of Sed0024403 vs. ExPASy Swiss-Prot
Match: Q5VNN5 (Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PDF1B PE=2 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.7e-83
Identity = 151/236 (63.98%), Postives = 187/236 (79.24%), Query Frame = 0


Query: 46  SKFRSPTTLVYAQAKRGFS--------VKEDDVASSVDLEFEAPLKIVEYPDPILRAKNK 105
           S+  S   L  A+A+RGF          +++D A++ DL+FE PLK+V+YPDPILRA+NK
Sbjct: 34  SRMGSVAPLAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNK 93

Query: 106 RIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPR 165
           RI++FDDNL+ L  EMFDVMYKTDGIGLSAPQVGVNVQLMVFNP G +GEGEEIVLVNP 
Sbjct: 94  RINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPV 153

Query: 166 VNRYSKKILLYDEGCLSFPKIYGDVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFD 225
           V + SK++L+Y+EGCLSFP IY +V RP++VKIDA+D+ GAK  V LSGL ARVFQHEFD
Sbjct: 154 VYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFD 213

Query: 226 HLQGVLFFDRMTDDVLDTIRPQLQALEKKYEDRTGLPSPERIENFRTRKVAAGFGK 274
           HLQG+LFFDRM+ DVL+++R  L+ LEKKYE+ TGL SPE IEN++ RK    F +
Sbjct: 214 HLQGILFFDRMSLDVLESVREGLKDLEKKYEESTGLVSPESIENYKGRKDLISFSR 269

[Close]

BLAST of Sed0024403 vs. ExPASy Swiss-Prot
Match: Q7UHZ5 (Peptide deformylase OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) OX=243090 GN=def PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-34
Identity = 72/175 (41.14%), Postives = 107/175 (61.14%), Query Frame = 0


Query: 81  PLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFN 140
           PL I+ +P P LR  ++ I   D  LK +  EM D+MY+ DG+GL+A QV + +++ V N
Sbjct: 2   PLSIIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVAN 61

Query: 141 PVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYGDVERPESVKIDARDINGAKF 200
           P G+R EGE  V++NP ++R  K      EGCLS P +YG V+RP++V++   D+ G + 
Sbjct: 62  PTGKRDEGESWVILNPEIDR-PKGNDTAQEGCLSVPGLYGQVKRPKTVRLRGFDLQGNEI 121

Query: 201 MVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQLQALEKKYEDRTGLPS 256
              L G  ARV QHE DHL G++FFDR+ ++ L  +   L+  +  YE + G  S
Sbjct: 122 NQVLDGFMARVVQHEVDHLDGIMFFDRIGEEGLRDLEGHLEEFKTDYESKQGTGS 175

[Close]

BLAST of Sed0024403 vs. ExPASy Swiss-Prot
Match: Q7NIF5 (Peptide deformylase 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=def2 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.2e-33
Identity = 71/160 (44.38%), Postives = 97/160 (60.62%), Query Frame = 0


Query: 81  PLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVFN 140
           PL I    D +LR  +K+I   +D ++KL Q+M   MY  DGIGL+APQVGVN +++V +
Sbjct: 16  PLAIHTLGDRVLRQGSKQISGINDEVRKLAQQMLQTMYSADGIGLAAPQVGVNKRMIVVD 75

Query: 141 PVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYGDVERPESVKIDARDINGAKF 200
              E      +VL+NP + ++S  + +  EGCLS P IY DV RPE V    RD+NG   
Sbjct: 76  IDPENAARPPLVLINPLIKQFSSDLAVDQEGCLSVPSIYADVRRPERVVATYRDLNGRPV 135

Query: 201 MVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQL 241
            +  +GL AR  QHE DHL GVLF DR+ + +   + PQL
Sbjct: 136 TLEATGLLARCIQHEIDHLDGVLFVDRVENQI--ALAPQL 173

[Close]

BLAST of Sed0024403 vs. ExPASy TrEMBL
Match: A0A6J1JF23 (Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111486320 PE=3 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.6e-133
Identity = 244/275 (88.73%), Postives = 260/275 (94.55%), Query Frame = 0


Query: 1   MAFTARLHLSLPHAFLHPVSRRSALPAVFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAK 60
           MA+TARLH+SLPHA L  +SRRSALPAV RRLSR+SSTG+L S+SSKFR PTTLVYAQAK
Sbjct: 1   MAYTARLHVSLPHALLPTLSRRSALPAVLRRLSRFSSTGRLLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSVKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDDVASS DLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYG 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V RYSKK +L++EGCLSFP+IY 
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTILFNEGCLSFPRIYA 180

Query: 181 DVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQL 240
           DV+RPESVKIDARDI+G +FMVNLSGL ARVFQHEFDHLQGVLFFDRMTD+VLDTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENFRTR-KVAAGFGKS 275
           QALEKKYEDRTGLPSPERIEN RTR KVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Sed0024403 vs. ExPASy TrEMBL
Match: A0A6J1EN89 (Peptide deformylase OS=Cucurbita moschata OX=3662 GN=LOC111435101 PE=3 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.1e-133
Identity = 245/275 (89.09%), Postives = 259/275 (94.18%), Query Frame = 0


Query: 1   MAFTARLHLSLPHAFLHPVSRRSALPAVFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAK 60
           MA+TARLHLSLPHA L  +SRRSALPAV RRLSR+SSTG+L S+SSKFR PTTLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPAVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSVKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDDVASS DLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYG 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V RYSKK +L++EGCLSFP IY 
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPSIYA 180

Query: 181 DVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQL 240
           DV+RPESVKIDARDI+G +FMVNLSGL ARVFQHEFDHLQGVLFFDRMTD+VLDTIRPQL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENFRTR-KVAAGFGKS 275
           QALEKKYEDRTGLPSPERIEN RTR KVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFGKS 275

[Close]

BLAST of Sed0024403 vs. ExPASy TrEMBL
Match: A0A6J1DF55 (Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111019929 PE=3 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 1.0e-127
Identity = 235/273 (86.08%), Postives = 250/273 (91.58%), Query Frame = 0


Query: 1   MAFTARLHLSLPHAFLHPVSRRSALPAVFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAK 60
           MA+TARLHLSL HA L P  RR ALPAVFRRLS +SST + FSHSSK R P+TLVYAQAK
Sbjct: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60

Query: 61  RGFSVKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDD A S DLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSAKEDDAALSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYG 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRV RYSKK +L++EGCLSFP+IY 
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180

Query: 181 DVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQL 240
           DVERPESVKIDARDI+G +FMVNLSGL ARVFQHEFDHLQG+LFFDRMTD+VLDTIR QL
Sbjct: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240

Query: 241 QALEKKYEDRTGLPSPERIENFRT-RKVAAGFG 273
           QALEKKYE+RTGLPSPERIENFRT +KVAAG+G
Sbjct: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 273

[Close]

BLAST of Sed0024403 vs. ExPASy TrEMBL
Match: A0A0A0LG66 (Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_3G837630 PE=3 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 3.9e-127
Identity = 235/274 (85.77%), Postives = 251/274 (91.61%), Query Frame = 0


Query: 1   MAFTARLHLSLPHAFLHPVSRRSALPAVFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAK 60
           MA+  RLH+SLPHA L  VS   + PAVFRRLS +SST KLFSHSSKF++P+TLVYAQAK
Sbjct: 1   MAYATRLHISLPHALLPTVSCWLSPPAVFRRLSGFSSTCKLFSHSSKFKAPSTLVYAQAK 60

Query: 61  RGFSVKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGFS KEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRI SFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFSAKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIGSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYG 180
           DGIGLSAPQVGVNVQLMVFN VGERGEGEEIVLVNP+V RYSKK +L++EGCLSFP IY 
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNSVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPMIYA 180

Query: 181 DVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQL 240
           DVERPES+KIDARDI+G +FMVNLSGL ARVFQHEFDHLQG LFFDRMTD+VL+TIRPQL
Sbjct: 181 DVERPESIKIDARDISGTRFMVNLSGLSARVFQHEFDHLQGTLFFDRMTDEVLETIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENFRTRKVAAGFGKS 275
           QALEKKYEDRTGLPSPERIENFR RKV AGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENFR-RKVGAGFGKS 273

[Close]

BLAST of Sed0024403 vs. ExPASy TrEMBL
Match: A0A1S3B8C2 (Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103487104 PE=3 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.3e-126
Identity = 234/274 (85.40%), Postives = 249/274 (90.88%), Query Frame = 0


Query: 1   MAFTARLHLSLPHAFLHPVSRRSALPAVFRRLSRYSSTGKLFSHSSKFRSPTTLVYAQAK 60
           MA+T RLH+SLP A L  VS   + P VFRRLS +SST  L SHSSKFR+P+TLVYAQAK
Sbjct: 1   MAYTTRLHISLPRALLPTVSCWLSPPVVFRRLSGFSSTCTLISHSSKFRAPSTLVYAQAK 60

Query: 61  RGFSVKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120
           RGF  KEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT
Sbjct: 61  RGFYAKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYG 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V RYSKK + ++EGCLSFP IY 
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVPFNEGCLSFPMIYA 180

Query: 181 DVERPESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQL 240
           DVERPES+KIDARDI G +FMVNLSGL ARVFQHEFDHLQG+LFFDRMTD+VL+TIRPQL
Sbjct: 181 DVERPESIKIDARDIRGTRFMVNLSGLSARVFQHEFDHLQGILFFDRMTDEVLETIRPQL 240

Query: 241 QALEKKYEDRTGLPSPERIENFRTRKVAAGFGKS 275
           QALEKKYEDRTGLPSPERIENFR RKVAAGFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENFR-RKVAAGFGKS 273

[Close]

BLAST of Sed0024403 vs. TAIR 10
Match: AT5G14660.1 (peptide deformylase 1B )

HSP 1 Score: 329.3 bits (843), Expect = 2.9e-90
Identity = 168/263 (63.88%), Postives = 202/263 (76.81%), Query Frame = 0


Query: 18  PVSRRSALPAVFRRLS-------RYSSTGKLFSHSSKFRSPTTLVYAQAKRGFSVKEDDV 77
           P   R  LP + RR +       R  ST    S  ++    T+ V A+ KR  S K+D V
Sbjct: 11  PPLSRILLPVLSRRATTLSAGYGRLKSTVTFCSTVNRTSPLTSSVRAEVKR-VSRKDDKV 70

Query: 78  ASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQV 137
           AS+ D++FE PLKIVEYPDPILRAKNKRID FD+NLK LV  MFDVMYKTDGIGLSAPQV
Sbjct: 71  ASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQV 130

Query: 138 GVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYGDVERPESVKI 197
           G+NVQLMVFNP GE GEG+EIVLVNP++ +YS K++ +DEGCLSFP IY +V RP+SVKI
Sbjct: 131 GLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKI 190

Query: 198 DARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQLQALEKKYEDR 257
           DARDI G +F ++LS L AR+FQHE+DHL+GVLFFDRMTD VLD+IR +L+ALEKKYE++
Sbjct: 191 DARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYEEK 250

Query: 258 TGLPSPERIENFRTRKVAAGFGK 274
           TGLPSPER+E  + RK   GFGK
Sbjct: 251 TGLPSPERVEARQKRKAGVGFGK 272

[Close]

BLAST of Sed0024403 vs. TAIR 10
Match: AT5G14660.2 (peptide deformylase 1B )

HSP 1 Score: 329.3 bits (843), Expect = 2.9e-90
Identity = 168/263 (63.88%), Postives = 202/263 (76.81%), Query Frame = 0


Query: 18  PVSRRSALPAVFRRLS-------RYSSTGKLFSHSSKFRSPTTLVYAQAKRGFSVKEDDV 77
           P   R  LP + RR +       R  ST    S  ++    T+ V A+ KR  S K+D V
Sbjct: 11  PPLSRILLPVLSRRATTLSAGYGRLKSTVTFCSTVNRTSPLTSSVRAEVKR-VSRKDDKV 70

Query: 78  ASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKTDGIGLSAPQV 137
           AS+ D++FE PLKIVEYPDPILRAKNKRID FD+NLK LV  MFDVMYKTDGIGLSAPQV
Sbjct: 71  ASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQV 130

Query: 138 GVNVQLMVFNPVGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYGDVERPESVKI 197
           G+NVQLMVFNP GE GEG+EIVLVNP++ +YS K++ +DEGCLSFP IY +V RP+SVKI
Sbjct: 131 GLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKI 190

Query: 198 DARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTIRPQLQALEKKYEDR 257
           DARDI G +F ++LS L AR+FQHE+DHL+GVLFFDRMTD VLD+IR +L+ALEKKYE++
Sbjct: 191 DARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYEEK 250

Query: 258 TGLPSPERIENFRTRKVAAGFGK 274
           TGLPSPER+E  + RK   GFGK
Sbjct: 251 TGLPSPERVEARQKRKAGVGFGK 272

[Close]

BLAST of Sed0024403 vs. TAIR 10
Match: AT1G15390.1 (peptide deformylase 1A )

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-21
Identity = 58/171 (33.92%), Postives = 87/171 (50.88%), Query Frame = 0


Query: 83  KIVEYPDPILRAKNKRIDSFD---DNLKKLVQEMFDVMYKTDGIGLSAPQVGVNVQLMVF 142
           +IV   DP+L  K + +D  +   + ++K++ +M  VM    G+GL+APQ+GV ++++V 
Sbjct: 82  EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 141

Query: 143 NP--------------VGERGEGEEIVLVNPRVNRYSKKILLYDEGCLSFPKIYGDVERP 202
                             ER   + +V+VNP +   S K  L+ EGCLS       VER 
Sbjct: 142 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 201

Query: 203 ESVKIDARDINGAKFMVNLSGLQARVFQHEFDHLQGVLFFDRMTDDVLDTI 237
             V +   D  G +  VN SG QAR+ QHE DHL G L+ D+M      T+
Sbjct: 202 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTV 252

The following BLAST results are available for this feature:

BLAST of Sed0024403 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989167.1	3.4e-133	88.73	peptide deformylase 1B, chloroplastic [Cucurbita maxima]	[more]
XP_022928203.1	4.4e-133	89.09	peptide deformylase 1B, chloroplastic [Cucurbita moschata]	[more]
XP_023530509.1	8.3e-132	88.36	peptide deformylase 1B, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_038904020.1	1.3e-129	86.50	peptide deformylase 1B, chloroplastic [Benincasa hispida]	[more]
XP_022152139.1	2.1e-127	86.08	peptide deformylase 1B, chloroplastic [Momordica charantia]	[more]

BLAST of Sed0024403 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FV54	8.2e-98	68.44	Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1B P...	[more]
Q9FUZ2	4.1e-89	63.88	Peptide deformylase 1B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3...	[more]
Q5VNN5	5.7e-83	63.98	Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q7UHZ5	1.7e-34	41.14	Peptide deformylase OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / ...	[more]
Q7NIF5	3.2e-33	44.38	Peptide deformylase 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX...	[more]

BLAST of Sed0024403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JF23	1.6e-133	88.73	Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111486320 PE=3 SV=1	[more]
A0A6J1EN89	2.1e-133	89.09	Peptide deformylase OS=Cucurbita moschata OX=3662 GN=LOC111435101 PE=3 SV=1	[more]
A0A6J1DF55	1.0e-127	86.08	Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111019929 PE=3 SV=1	[more]
A0A0A0LG66	3.9e-127	85.77	Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_3G837630 PE=3 SV=1	[more]
A0A1S3B8C2	3.3e-126	85.40	Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103487104 PE=3 SV=1	[more]

BLAST of Sed0024403 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14660.1	2.9e-90	63.88	peptide deformylase 1B	[more]
AT5G14660.2	2.9e-90	63.88	peptide deformylase 1B	[more]
AT1G15390.1	2.2e-21	33.92	peptide deformylase 1A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	PANTHER	PTHR10458:SF2	PEPTIDE DEFORMYLASE, MITOCHONDRIAL	coord: 42..248
IPR023635	Peptide deformylase	PRINTS	PR01576	PDEFORMYLASE	coord: 182..200 score: 35.09 coord: 201..230 score: 47.47 coord: 170..181 score: 55.25 coord: 111..140 score: 40.68
IPR023635	Peptide deformylase	PFAM	PF01327	Pep_deformylase	coord: 82..230 e-value: 3.1E-49 score: 166.6
IPR023635	Peptide deformylase	TIGRFAM	TIGR00079	TIGR00079	coord: 82..229 e-value: 7.7E-47 score: 156.8
IPR023635	Peptide deformylase	PANTHER	PTHR10458	PEPTIDE DEFORMYLASE	coord: 42..248
IPR023635	Peptide deformylase	HAMAP	MF_00163	Pep_deformylase	coord: 80..243 score: 27.876606
IPR023635	Peptide deformylase	CDD	cd00487	Pep_deformylase	coord: 84..224 e-value: 2.85183E-66 score: 201.175
IPR036821	Peptide deformylase superfamily	GENE3D	3.90.45.10	Peptide deformylase	coord: 66..258 e-value: 4.4E-67 score: 226.6
IPR036821	Peptide deformylase superfamily	SUPERFAMILY	56420	Peptide deformylase	coord: 81..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024403.1	Sed0024403.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018206	peptidyl-methionine modification
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0042586	peptide deformylase activity