Sed0024363 (gene) Chayote v1

Overview


Name	Sed0024363
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Elongation factor
Location	LG13: 22994535 .. 22996118 (+)
RNA-Seq Expression	Sed0024363
Synteny	Sed0024363

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAATCCAAAAATTTAAAGTTCCCTAAAAAGATTGTTTTAACCTAATAATCCTACAACCTTACTAAACTTTGAAAATCAGGGAGGAAGGCTCAAATGCAACGGTCATGATCAACGCAACGGTCGCATCGGAATCGGTGAGATCTGGCGGAAATCGGTTATTATTTTGAATTTACGTTCCGCAGTTGAGAAAATTCTTCTTTGGAGGAGAGAAACAAACCAGAGATCGAGATTCGCCAAAGTAATTTGGATTCCATTTTCTCAGAATCGATTCATCATCCTACAATCTATATCTCTTTGATTTTGATTCTGTTTTTGATGGTTTCAGATTTGAGATCTTGGCGTTTCCTCTCTTCTCCCAAGGATGAAATGGTGGAGCAAGACGACTTCTACGCTGCGACGAATCGCTTCTCGTCTCGGTTTTCGCAACCGCGGTCAGTTGTTTCTTTACTCAGATTTGCTTTCAGAATCTATGATTCCAATTCTCTGTTCTAAGCGTATGAAATTTCTGGTGAATCTTGTTACAATTTTGTTCATGTCTTTGTTCTGATCATTCTATGGAATTGAAATTTCTGGTGAGTCTTAATAAGAAATTTAGAAAGTTTGTTTGATTGTCTTTTTGACGTTCTGTTTTGCTAAAACTTAAATAATTCAGTATCGAGGAAATGCATCGTTGGTGATGTTTATTCATCTCATAATCAATTTACGATGAAAAGAGTAGTCTACTGAAGACTCTATTTTTTTTATGTGAAACATTAATTGATTCTTAGCAATAGGTGATGAGTTCAATTTATTGTGTCGTGAAAGTCTACTTAAAAATTAATGTTCTTGAAAAAACATGTTCGTACACTCACGGATGTAAAAAGTAATAATAATTAATAAGCTCATCTTGACAATGAAATGAATTCATCTATAAAAGTTGTGAGTTTGTATCACTTTTCTCAAACTCGGAACTTAAATGATAACCTATTCATCAATCTTGGATTGATGTGACCCTTTTTTATTGAATCGAACATTCGGTTGAGTTTAATCATCTCTAAGATAATAAGAATCTTTCATTTCAAAACCAAATAACATTGTTATTAGTGACTCACCTATCTTACAAAGGTCGTAAGATTTACTCAACTTTTTATCGTGGAATCCTTGAAATGGAACAGGTCTTATTAAACTAGGGCGAGATGTGAAGGCGTGTGAATACGAAGATGTGAACGTGATGTGGGAGATGCTCAAGAAAAACGACACCGAGCTACTTGACATCTCGGAAAAACGTCGAAAGAGGAGATCCTCTTGGAATATTTTCGGGTGGGCTCGATCTGCTCAATGCATTGGCAGGAGATACTGAGAAATCTCACCTCACAATCAGCATGATATACTCTTTTTGGAAAATCCAACACCATGATTTTGGGTCATATTTGTAACCAGGTAATGAAAGAGATTGAAAAACAAAGCAATATCCTTTCTATGTATCAGCTAAGATGTCATTTCCTTGTTGGAACCATACAATGACATGAACTAATTACCTTATATGACCCTCTTTCTTCTCTCCTTGCTTTTTTATCTATGAAATAATATACTAAAATTTTGC

mRNA sequence

AGGAATCCAAAAATTTAAAGTTCCCTAAAAAGATTGTTTTAACCTAATAATCCTACAACCTTACTAAACTTTGAAAATCAGGGAGGAAGGCTCAAATGCAACGGTCATGATCAACGCAACGGTCGCATCGGAATCGGTGAGATCTGGCGGAAATCGGTTATTATTTTGAATTTACGTTCCGCAGTTGAGAAAATTCTTCTTTGGAGGAGAGAAACAAACCAGAGATCGAGATTCGCCAAAATTTGAGATCTTGGCGTTTCCTCTCTTCTCCCAAGGATGAAATGGTGGAGCAAGACGACTTCTACGCTGCGACGAATCGCTTCTCGTCTCGGTTTTCGCAACCGCGGTCTTATTAAACTAGGGCGAGATGTGAAGGCGTGTGAATACGAAGATGTGAACGTGATGTGGGAGATGCTCAAGAAAAACGACACCGAGCTACTTGACATCTCGGAAAAACGTCGAAAGAGGAGATCCTCTTGGAATATTTTCGGGTGGGCTCGATCTGCTCAATGCATTGGCAGGAGATACTGAGAAATCTCACCTCACAATCAGCATGATATACTCTTTTTGGAAAATCCAACACCATGATTTTGGGTCATATTTGTAACCAGGTAATGAAAGAGATTGAAAAACAAAGCAATATCCTTTCTATGTATCAGCTAAGATGTCATTTCCTTGTTGGAACCATACAATGACATGAACTAATTACCTTATATGACCCTCTTTCTTCTCTCCTTGCTTTTTTATCTATGAAATAATATACTAAAATTTTGC

Coding sequence (CDS)

ATGAAATGGTGGAGCAAGACGACTTCTACGCTGCGACGAATCGCTTCTCGTCTCGGTTTTCGCAACCGCGGTCTTATTAAACTAGGGCGAGATGTGAAGGCGTGTGAATACGAAGATGTGAACGTGATGTGGGAGATGCTCAAGAAAAACGACACCGAGCTACTTGACATCTCGGAAAAACGTCGAAAGAGGAGATCCTCTTGGAATATTTTCGGGTGGGCTCGATCTGCTCAATGCATTGGCAGGAGATACTGA

Protein sequence

MKWWSKTTSTLRRIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIGRRY

Homology

[Close]

BLAST of Sed0024363 vs. NCBI nr
Match: KAG6608437.1 (hypothetical protein SDJN03_01779, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1   MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLD 60
           M+WW K  S LR    R+ASRLG+R RGL+KLGRDVKACEYEDV+VMWEMLK+N+TE + 
Sbjct: 69  MEWWIKVASPLRRFTSRVASRLGYRKRGLLKLGRDVKACEYEDVHVMWEMLKRNETEAVG 128

Query: 61  ISE-KRRKRRSSWNIFGWARSAQCIGRRY 85
           I E +RRK+R  WNIF WARSA CIG R+
Sbjct: 129 IPEGRRRKKRPIWNIFWWARSAPCIGCRF 157

[Close]

BLAST of Sed0024363 vs. NCBI nr
Match: KAG7024293.1 (hypothetical protein SDJN02_13107, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.6 bits (283), Expect = 8.2e-22
Identity = 55/88 (62.50%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1   MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLD 60
           M WWS+ TS LR    RIASRLGFR RGL+KLGRDV+ACEY DV VMWEM+K+N+ E++ 
Sbjct: 48  MGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVG 107

Query: 61  ISEKRRKRRSSWNIFGWARSAQCIGRRY 85
           + E+RRKRRS  NI  W  S  CIG R+
Sbjct: 108 VQERRRKRRSLLNILWWGGSGACIGCRF 135

[Close]

BLAST of Sed0024363 vs. NCBI nr
Match: KAG6591414.1 (hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 2.2e-19
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1   MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLD 60
           M WWS+ TS LR    RIASRLGFR RGL+KLGRDV+ACEY DV VMWEM+K+N+ E++ 
Sbjct: 23  MGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNEKEVVG 82

Query: 61  ISEKRRKRRSSWNIFGWARSAQCIGRRY 85
           + E+RRKRRS  NI  W  S   +   +
Sbjct: 83  VQERRRKRRSLLNILWWGGSDMALSHHH 110

[Close]

BLAST of Sed0024363 vs. NCBI nr
Match: XP_031406616.1 (uncharacterized protein LOC116215154 [Punica granatum] >OWM70797.1 hypothetical protein CDL15_Pgr014470 [Punica granatum] >PKI31246.1 hypothetical protein CRG98_048364 [Punica granatum])

HSP 1 Score: 94.0 bits (232), Expect = 6.7e-16
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 4  WSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISE 63
          W K    LR     +A+RLG RNRGL+KL +DV+ CEY+DV+VMW MLKKN+TE   +S 
Sbjct: 6  WDKMRVPLRNLWIDVATRLGVRNRGLLKLRQDVRRCEYDDVHVMWNMLKKNETEAAALSP 65

Query: 64 KRRKRRSSWNIFGWARSA 78
          KRRK+RS W+ F WAR A
Sbjct: 66 KRRKKRSFWSFFDWARCA 83

[Close]

BLAST of Sed0024363 vs. NCBI nr
Match: XP_021646795.1 (uncharacterized protein LOC110639975 [Hevea brasiliensis])

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 1  MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLD 60
          M+WW K    +RR    +A R+G R RGL+KL  DV+ACEYEDV VMWEMLK+N+TE   
Sbjct: 1  MEWWDKVIYPVRRVWKGVAFRIGIRKRGLLKLHHDVRACEYEDVRVMWEMLKRNETENAK 60

Query: 61 ISEKRRKRRSSWNIFGWARSAQCIG 82
          +S  R K+RS W+ F WAR     G
Sbjct: 61 LS-GRNKKRSFWDCFSWARCTPYFG 84

[Close]

BLAST of Sed0024363 vs. ExPASy TrEMBL
Match: A0A0A0L522 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642370 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.5e-24
Identity = 57/87 (65.52%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDT-ELL 60
          M+WW K ++ LR    R+A RLGFR RGL+KLGRDVKACEYEDV+VMWEMLK+N+T +L+
Sbjct: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60

Query: 61 DISEKRRKRRSSWNIFGWARSAQCIGR 83
            SE+R+KR+S WNIF WARSA C+G+
Sbjct: 61 GSSERRQKRKSLWNIFWWARSAPCLGK 87

[Close]

BLAST of Sed0024363 vs. ExPASy TrEMBL
Match: A0A218WD46 (uncharacterized protein LOC116215154 OS=Punica granatum OX=22663 GN=LOC116215154 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.2e-16
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 4  WSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISE 63
          W K    LR     +A+RLG RNRGL+KL +DV+ CEY+DV+VMW MLKKN+TE   +S 
Sbjct: 6  WDKMRVPLRNLWIDVATRLGVRNRGLLKLRQDVRRCEYDDVHVMWNMLKKNETEAAALSP 65

Query: 64 KRRKRRSSWNIFGWARSA 78
          KRRK+RS W+ F WAR A
Sbjct: 66 KRRKKRSFWSFFDWARCA 83

[Close]

BLAST of Sed0024363 vs. ExPASy TrEMBL
Match: A0A7N2RF01 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.5e-16
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 1  MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLD 60
          M+WW K    +RR    +A+RLG R  GL+KL  DV  CEYEDV VMWEMLK+++TE   
Sbjct: 3  MEWWDKVKIPIRRVWIGVATRLGIRKSGLLKLRHDVSTCEYEDVRVMWEMLKRSETE--Q 62

Query: 61 ISEKRRKRRSSWNIFGWARSAQCIGR 83
          +  ++ K+RS WNIF WAR   C+ R
Sbjct: 63 VVPEKSKKRSFWNIFDWARCTPCLCR 86

[Close]

BLAST of Sed0024363 vs. ExPASy TrEMBL
Match: A0A2C9U1C8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G044800 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.0e-15
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 1  MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLD 60
          M+WW K    ++R    +A R+G R RGL+KL  DV+ACEYEDV VMWEMLK+N+TE   
Sbjct: 1  MEWWDKVIHPVQRVWKGVALRIGIRKRGLLKLHHDVRACEYEDVRVMWEMLKRNETENAK 60

Query: 61 ISEKRRKRRSSWNIFGWARSAQCIG 82
          +S K +K+R  W+ F WAR     G
Sbjct: 61 LSGK-KKKRCLWDCFSWARCTPYFG 84

[Close]

BLAST of Sed0024363 vs. ExPASy TrEMBL
Match: A0A2C9U1E6 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G044800 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.0e-15
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 1   MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLD 60
           M+WW K    ++R    +A R+G R RGL+KL  DV+ACEYEDV VMWEMLK+N+TE   
Sbjct: 30  MEWWDKVIHPVQRVWKGVALRIGIRKRGLLKLHHDVRACEYEDVRVMWEMLKRNETENAK 89

Query: 61  ISEKRRKRRSSWNIFGWARSAQCIG 82
           +S K +K+R  W+ F WAR     G
Sbjct: 90  LSGK-KKKRCLWDCFSWARCTPYFG 113

[Close]

BLAST of Sed0024363 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 9.0e-11
Identity = 28/77 (36.36%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 2  KWWSKTTSTLRRI----ASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKND--TELL 61
          +WW+      RRI      R+GFR+ GL++L  DV +CEYED+++MW +L KN+  T + 
Sbjct: 8  EWWNTMAFPTRRIWNRFTVRVGFRHSGLLRLEHDVSSCEYEDIHIMWNLLHKNEDLTRVP 67

Query: 62 DISEKRRKRRSSWNIFG 73
             +++++++  WN+ G
Sbjct: 68 IQQQQQQRKKPCWNLLG 84

The following BLAST results are available for this feature:

BLAST of Sed0024363 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608437.1	1.3e-24	67.42	hypothetical protein SDJN03_01779, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024293.1	8.2e-22	62.50	hypothetical protein SDJN02_13107, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591414.1	2.2e-19	57.95	hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_031406616.1	6.7e-16	57.69	uncharacterized protein LOC116215154 [Punica granatum] >OWM70797.1 hypothetical ...	[more]
XP_021646795.1	3.3e-15	52.94	uncharacterized protein LOC110639975 [Hevea brasiliensis]	[more]

BLAST of Sed0024363 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0024363 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L522	2.5e-24	65.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642370 PE=4 SV=1	[more]
A0A218WD46	3.2e-16	57.69	uncharacterized protein LOC116215154 OS=Punica granatum OX=22663 GN=LOC116215154...	[more]
A0A7N2RF01	9.5e-16	51.16	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2C9U1C8	8.0e-15	50.59	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G044800 PE=4 SV=...	[more]
A0A2C9U1E6	8.0e-15	50.59	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G044800 PE=4 SV=...	[more]

BLAST of Sed0024363 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43150.1	9.0e-11	36.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181:SF4	EXPRESSED PROTEIN	coord: 1..79
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024363.1	Sed0024363.1	mRNA
Sed0024363.2	Sed0024363.2	mRNA