Sed0024358 (gene) Chayote v1

Overview
NameSed0024358
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationLG06: 10516840 .. 10526421 (-)
RNA-Seq ExpressionSed0024358
SyntenySed0024358
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACGCCTATTCAAACCCTAAGTTCAATACACCACCATTAAATCAACTCCTCACTCAAATAACCACCATTAAATTAGATCGTTCTAATTTTCTGTTATGGAAAAATTTAGCCCTACCTTTTTTGAGAGCCTATAGGTTAATAGGCCATTTGTGTGGGGAGGATCAATGCCCTCCGAAATTTTTACCCACAGCCATAGGTCCAAATGAACCCACAGCTGCAGGTGGGTTGATGCCAGCGTCAGGTCTGACGCGCAGAATCGCGTCAGGAGAGGGAGTTGCGTCATCGGAGGCGACCACAGCCTCCTCGGCGGGAGTAACACGGCCAGGTGGCGCGCTGCACAAGAGCAAATGAAATGGAAGCAGCAATCATCGCAGACGACACAACAAAGAAAGTGCAGGTATAACTGTTGTAGACGGAGGTGGTGCAAATGCAGCAGGTGGCGTCAGCGCAGCAGGCCTCGTCAGTGCCGCAGGGACTGGCTTGTGGTTAGGTTTGGTGCAGCAACAGGGGCCCAAAATGTCCTTGGAAGTCAAGGTATTTTTCCAGCAACTCTTATACTCATGCATGAAGGATTAGATGTCAATCTTTCTCCTATTCTCTATGATGCACATGATGCTTGGGTTGTTGTAGACCAATTGTTGCTAGGTTGGCGTTATAATTCCATGACTCAGGAAGCTGCCACACAAGTGATGGGATGCAAAACTGCTCATGAACTTTGGACTGCAATTCAAACTCTCTTTGGTGCACAATCTCTGTAGGATCGGTATGACAACCCTAGAGGGGGGTGAATAGAGTTTCTTTAAACTTTATGAAACTTTTTCCTAATGTGGGCCCAATTAAACAAATGAATTTACTTTTTACTAAACAATCAATTTAACCAAGAATACCATGTAAATTAAATAAGAAATTATCAAAGACCGATTTCAAGCACCCTATTTAATTATAATATAAAGATTGGTAAAGAATATGTCAAGATAAAATTATAACAACCAAACAAAACATATAAGAGCAATTAATATAATATAACAATAAATTAATTGCAAAAATAAAAGAAGTTAAGGATAGAGAAATTGACACCGTGAATTTATAGTGGTTCGGCGCACCTACTCCACTCCCCAAGCTCCTCTTGAGTATTCCACTAAAATAATGAAGACTCTTTCCACGGCTTAGAGTCAAACCGTTACAACGTTCCTTTTGCGGGAGCAAGAACAAACCCGATCTTTTCCACGGCTCAAGATCAAACCATTACAACCTCTCTTTTTATGGATCAAGAGAAAACCGTACAATGATTTGGAAATGTAAGATCAAGATGAACAAACTCTCTCCAAGAGTGGATTTACAAATTTTAACTCTCACAAATCAAATCCTCACAATACAATAATTTCTCTCTCAAGAATAAGATGAAAATTGAAAGCTTGAGGAGAGCAACAATGAAGACTTCTTTTATTTTTGGAGGATTTGAGAAATATGAAACTTGGTGTCTTCATTTGGTGGAGAAGATGAAGCTTAAATAGACATGAAGAGGCAAAGTTACCGTTAGACACAAAATACAATAATATTATAGTATTAAAAAAGTTACCGTTAGACATAAGGCATAATAATATTATAATATTCAAAAAGTTACCATTAGACACAAGACATAATAATATTATAATATTCAAAAAGATGCATTTGGACAAACACATAAAAGTAGTATAACAATATATAACTTTTTTTCCCTTTTAAGAAAGTTACCGTTAGACACATCCTCAAATAATAATATAATAATGGATACCTTTGTTTTTCTTTTCTATTTTGCTTTTACCTTGACTTTTTATAACACAAAAAGAAATCTCAAATGTCAAACATCCAAGGCTCCACATGTCGCTCTTGGATTGGCCAATTTTTGCTACGTCATCACGTCGCGATTTACCATTCAAAATCTTTTAGGCCATAAATTTTTCATCTTAACTTTGATTTGAGTAATTCAAAATGGGTTTGAATTATTATTTCAAGCTCTACAAAATGTATATTTCAAAACACTATATTTGTCAGTAAATAAATTTCAAGTTTGTTATCATCAAAACATTAATTAATTAATTAGTTAAAATTAATTAATTTGAGATGACCAAAAAGCCAACAATCTCTCCATTTTTTATGATGACAAACTATACAAGAAAAATGAATTCAAAGTGGTGTATGATATATGATATTGACTAGATGCACAATCAACAAACATACAAAATATCAATATACTTTCATTTTTCTTATCATCTCTCCCCCTTTTGGAATCAATCAAAAAGAAAAAATAAGAAAATTAATACAACGATGATTTTAGCTAAATATTTTCCCATTTTTAAATAATCGCTAATTTCTCCCCCTTTTGAAATCAATTTAATACTCTATCTTAATAAAGGACAAAAAGACATTTAACACATAAATCAATTATAGATGAGTATAAAGATATTAATCAATAAAATAAATATTTTCATGAAATTTCTTCAAAGACAATAACAACTTTTTCCCCTAAAAAGATAAGCAATATGCATAAGAAGGGTAATCACCAAATGAGTGTTATGAGGAGAATCAAAGTTATCATATAAAGTATTACTCCCCCTAAAACAAATAATCTTCTTCTAATAATAAGTACTGAGAAGATAAGACAATTTGAGTAAATTCAAGAATAATAATTTACACAAAATAAAAGTAAAATTTTGAACTTCAAACTATCACAAAATAAACCATTTATAAATTTTTCATTAAAAATCTCTTTCAAGAAAAAAATAATTTTGAATAAAATGCTTACGGGATTCAAGAATATAGATCAATTTCATAAAATACTCCCCCTATGAAAAAGAATTATACAACTCTTTTGAAACTTTTTTTTTTTTTTTGGAACATTTTATTCAAATGAGACAAGCAATATATAAAATTAAACTTTGATTAATAACATGTTTCATATAATGAGACAAAAGCCAAATAAATATTCAATATTTTCTAAGGCAACAAAAATTTATAGAGAGCAAATATCATCAAGACACAAAACATAGCTCATGTTCAAAAAACAACAATAGTATTGAACTATAATTATAATAAAACTATTAGCACTTTCAATCAAAATAATAGCACATTTCAATAACTATCATAATATAATATTTCTCAAGAATTATATGTTCAATCAACCAAAAATCACAATAATACCATAAACAGATATTCAATATATTTCCATGGTATCAATAATTAAAATAATAAGGTATTAGAAATTTTGAATAAGTTTGGAAATAATTGGCCACAACAGTTAAAGAATAAATAACCTAATTTATGGAAAATAAAACAATAAAAAATATCTTCAATTTATCTAAAGACATTTAACCCAATAATCAATAAAAAGAATGAAATTAATTTCAAACATTTAAATCATTTATGAGATATAGTTTCCATAATAGATACCAACAAGAATACTTATCTCCAAAGTTCAAAAATAAGTTACCAAACTAAGCAACTTTTTCTTTATTGGTTTCAAGCAAGCCAAAATTGTTGCTCCATTTGAATTAAATTCAAATTTGAAGTTCAAGCAACCAATTGCTTCTTCAAAATTACACCAACAAAGAAAGTTCAATCAAAGGATTTTGGTACCCATCTTATGGGTCCTTCATTGTTAGTAAATGTAGATTTTGGAATCCATTTCATTTTAGATCCAACATATTTAAAATTCAATTTTGGCAAATAACAAGTATTGAATTTATGACCAATTTTGCCACAAGAATAACAAACAACATTTAACATGAATTTCTTTTTAACAAAATGATTTTTCACAAAGAAATTCTTTCTTGGAGTAGTTTTCAATTTAAAGCAATTTGGTCTAATATGACCTTTAACTCCACAATAATGACATATAGGTAGAAACTTAAATTTTAAATGCATATGTCTAGTATTTCTAAAATTATGCACAAATTTTGATTTTTCATGTAAATCTCTATCTTTTTCATACTTATGATTACATTTTTCATTATGAACACATTTAGATCTAGTATGAAATTGTCTAGGCACAAAAGTTGATTCTCATTAATTTTTCTAACTTTCTCATACTTTGACACAAAACTAGAACTAACCAAATTAGATGCATGGGGTAAAACACTTTTAGACAAACAAGGAGTACCCTTAACAAAAATATTCTTAGAGCTAGATGAAGGATTTTCAATCCTATAACCTAAACTCTTTTTCACATTTAAAGCTTTATCCATGTCAATGGTTTTATCTAATTGTTGAGCATCAATAGTCAATCTTCTAATGGATTCTTTTGCAATTTCAAGTTCTTTAGTAGCCATCATTTCTTTTTCTTTAAGCATATGCAAAAGATCATTTTTACCAAGACTATCACATTCAAGAAATTTAATTTTGTCAATCAAAGAAAATTTATCACTTTCTAAAGATGTATTGCTACTTTCCAAATCAATAATTTTATCATTTAAGCTAGCAATTTCTTCTTTTAATTTCAATGAACAAAAATCAATTTCCTCATTTTTATTTTTCAAATCATCTAATTCCATTTTCAAATCACAAGATAAACATTTGAGTTCATCATTCTCTTTTTCAAGGAATTTAATTTTATCATCTAAGAGATTTTTCTCATCAAAACAACTATCAATCTCACTATGCAACAATAAAGTATTTGCACCATTTTTCAATCAAACATTTTCATCTATCAAAAATTTATTTTCAAGAGATAAAAATTTATACTTCTTTGATAATTTAGCATATTTAGATGCAAGTTTTTCGAAATCTTGTTGTATGCTTTCAAATGCATCAAATAACTCATTGTAAGAAAGAGGTTCTCGAGTTACCTCATCTTCGTCGCTTTCCTCATTGAAATCGTTAGTTGAATTAGCCATCAAACATAAAGAAGCTTTATCACATTTCTCTTTTTCAATTTCATGAATAATTTCTTGATTTTGAGAATTATAATTCTCCTTCACATCAAATAAATAATTAGAAATACAAGGAGAATTTTCTACATTATACATGTTTTCAAGAAAATTCCTGTAACGGCCCAGGTTTTCATCCCGGTCTTCCAGGTTTTCCCTAAGGGTATTTTGGTAATTTGGTCAGGTCTTCAGGGCCGTTTGTGTCTTTTTCTAGTTGCTAAGATTATTGGATGGATTTATGTAGGTTTTTGAGGCTTTGTGGAAGGGTTTGAGCAAGGTTTGATGCAAAAGTAAAAATAAGGGAAATTTTGTTGTAGCTGGGTTTTGAACCCGGGTCTCCAGGAAAGCTTATGGGGATGCGTGCCAGATGAGCTATTGAGAGCTCTTGTTGCTCTGTCCGTATCATTTTATGGTTAGCCTTGGATTTTGGAGTTTTGGTGCATTTGGTTAAATGAAAAGAAAATAGGTTTTGCCATATCTTCTTCTCCAAAATCTTGTGGCCGCCCAAGCTTTCTCCCAAGCTCTCTTGCCGATCCTTCATTCTCTTTGCATCTCCTTGGTTCGATCATCACCATTCCGGGTAAGACTTCGTCTTCTTCATCTTCTCATTTGGGTGTTCTTGCTGGCCGAAGGTAAGAAGAAGTGTTGTGTGTGTGTGTGTTTGTTGCAGCCGCCCGCACCGCCTGAGCACACTGTCGCGGCCAAAGAAAGACGCCCAGAGCCCCCATCGCAGCCTCAAAGCCGCCCGGATCGTTGCCGCAAAGACACCAGCGCCAGATCGCGATTCGCCGTTCACAAGTCGCGCCGCGCCGCATCGCACGCTCAGCGCCGCGCGCCTTCACTCCGAGCCGCTCGCCGTGTCCGCGTCGCACGCCCAGCGCCCGCGGGCCTTCGCTCCGAGCCGCTCGCCCGCACTCCTAGACGCTCGCCCGTGTCCGTGCCGCACGCTCAGCGCCTTGCCGTGCCGCTCGCCTGCCGTGTCCTGCCCGTCCTCGCGCGCGGCAAATGCGCCCAAATTGCAAATTTCACCAAGATCGGCTGCAGCCAGCGCCGCTAGCCTCGTGTCGCCGTGTCATGTGAGTGCTCCCGAGCCGAGCCTGCTGTTTTATTATTTTTAGGCTTATAGATATTGATTGTTATTGTGTTTGCTAGGTTCCGTTAGCTAGCTCGGGATTGTCCACAGCTTAGGATTTGTGTGTAGAAGCCTCCCGACCAAGGTAAGGATTTCTTACCGGAGTTGTGTGGACCCTGCGATGTTCTATGTGATTGTTGTTTGTATGTTTGTTTGTGATTATCAGCATGTATAGTTTAGGTGCTCTGTTCTAAATTCCTGACTAGCATGACTTTGTATGTTGTTCTCTCATGTTAGTCCATGCTAGGTTGTTCCGTTCTGGCTTGCTCATATCTGTTCTTGCTTCATAGTACCATGCTAGGTTTGTTGTATCTGTTGAGCACGTTTTGGATTGTATTGGATTGTATGTTATTGTTATGATAGGTTAGAGTGTAGGTAGGTAGCATCATCCGGGCCTGATGCACAAAGTATCTTGCATCCATGGCAGGGACGTACGAGGTAATACTCCGTCCCTGGACCCCGTGAGGGTTTAGCTAACCCGACCGGTAGGCCCTGCAATCTTGGGTGAGGGTGGTAGTCTGCGCGATGCCCCAACGGTCGGGATGATAACTTGGCATTCCTCGTCCGGCGGCAGCCGCCGCGTCCTCGGCGTGTTCGGCAGAGAGCCCGATTGCCACTGTTAGGGCAAGGGCGGCTTCTCGGTGTAAGCCTACCACGACCGATTCCTTAGCCTCGGTGCGGTGGTTCAGTGACATAGTTCACGTGTCCAGTCTCTCACACCCTATGTCGGTGACACCGATCCGGAGATTTAGTTAGGCATGGTGGATCGACTCGGGCGACTTGCCACTAGACCCGCAACCCCCGTGAGTTGCGATGAGCATGCGGTGCGCTCATACGCTCATTACAAATACCGATCGAGAGCTCCTCGGGATTGTGAGCCGTGCACACTTTAGTATCGATGAGATGAGCAGCCGAGGCCGAGACTTGTTTCTCGTATAGGGCGTATTGTGTAGTGTGGTTTATTCCGGACTAAGACCCTGAGTTGGCATCCGAGGTCCAAGTGTGGACTTAAGCTATGTGCTCTATTCTGTGTTTATATTCATAGCTTGCATACACTCATCTAGATGACCATGTGCATCGTATTGTACCCCGGTTGGGGATTCTTACTGAGTAATTCGTTACTCACCCTTATTTTGTGGTTTTCCACAGGTAACCAAGGTGCGAGACAGGATGGCTGAAGGAGGAGCTGTGATCATGGGATCCTGCTGTCGTCTCTGACTTTTATTTCTATGACTCTTGTCTTTTTTTTTATTTTCCCCTGAATGCATGTAGTCGGGCACGGAGCCCTAGGATGTTTTCTGAACGTTTTTGTGGATTCCAGCTTTTTTGTATTTGAGGATGTTTCAAATGTTTTAATAAATCTCTGATCAGAGTATGCGTTTAGAAATGTATTTGCCTTGAAACAGGTGCTTGGAAACAGGGACAGGTTTCAGCAATCTATTTGACTTCTGATTGAATCTCTTTTGTTTTGTTTTAATTGGGAATCCAAAAACTTAATTGCATATTGTCCTTTACTTTGAATGCATGCATTGGGGTAAAGACCTATTTAGAGCCCCTTTTGGGTCGGGTCTTTACAATTCCAAACATCATATGCATATTCAAAATGTGAAATTATATCAAATTTTTTTTTATCTAATGCACAATATATAATATTTAAAACTTTAGCATTAAAAGTGGGCGACTCAATATTCAATTCCAATTTGGACAAATCATGCTCACAAACATATAAAATATTAAAATCCATACCAAGCATAAAAGACTTTATTCTATTTTTCCAAACATTATAATTTAAACCATTAAAGAAAGGAGGTCTATCATTAGAATCACTTTCAAAATTTAAAGTTGTCATAGCTCTTAGCAATTAAGCTTTTAAAATAATTTCTTCAAAATATTAATAAGATACTAAAAGTATCAAAATAATATTTGAAAAATATTTTTATCCAAAGAGCAACCGCTCTGATACTAATTCTAGGATCGGTATGACAACCCTAGAGGGGGGTGAATAGAGTTTCTTTAAACTTTATGAAACTTTTTCCTAATGTGGGCCCAATTAAACAAATGAATTTACTTTTTACTAAACAATCAATTTAACCAAGAATACCATGTAAATTAAATAAGAAATTATCAAAGACCGATTTCAAGCACCCTATTTAATTATAATATAAAGATTGGTAAAGAATATGTCAAGATAAAATTATAACAACCAAACAAAACATATAAGAGCAATTAATATAATATAACAATAAATTAATTGCAAAAGTAAAAGAAGTTAAGGATAGAGAAATTGACACCGTGAATTTATAGTGGTTCGGCGCACCTACTCCACTCCCCAAGCTCCTCTTGGGTATTCCACTAAAATAATGAAGACTCTTTCCACGGCTTAGAGTCAAACCGTTACAACGTTCCTTTTGCGGGAGCAAGAACAAACCCGATCTTTTCCACGGCTCAAGATCAAACCGTTACAACTTCTCTTTTTATGGATCAAGAGAAAACCGTACAATGATTTGGAAATGTAAGATCAAGATGAACAAACTCTCTCCAAGAGTGGATTTACAAATTTTAACTCTCACAAATCAAATCCTCACAATACAATAATTTCTCTCTCAAGAATAAGATGAAAATTGAAAGCTTGAGGAGAGCAACAATGAAGACTTCTTTTATTTTTGGAGGATTTGAGAAATATGAAACTTGGTGTCTTCATTTGGTGGAGAAGATGAAGTTTAAATACACATGAAGAGGCAAAGTTACCGTTAGACACAAAATACAATAATGTTATAATATTAAAAAAGTTACCGTTAGACACAAGGCATAATAATATTATAATATTCAAAAAGTTACCGTTAGACACAAGGCATAATAATATTATAATATTCAAAAAGATGCATTTGGACAAACACATAAAAGTAGTATAACAATATATAACTTTCTTTCCCTTTCAAGAAAGTTACCGTTAGACACATCCTCAAATAATAATATAATAATGGATACCTTTATTTTTCTTTTCTATTTTGCTTTTACCTTGACTTTTTATAACACAAAAAGAAATCTCAAATGTCAAACATCCAAGGCTCCACATGTCGCTCTTGGATTGACCAATTTTTGCTACGTCATCACGTCGAGATTTACCATTCAAAATCTTTTAGGCCATAAATTTTTCATCTTAACTTTGATTTGAGTAATTCAAAATGGGTTTGAATTATTATTTCAAGCTCTACAAAATGTATATTTCAAAACACTATATTTGTTAGTAAATAAATTTCAAGTTTGTTATCATCAAAACATTAATTAATTAATTAGTTAAAATTAATTAATTTGAGATGACCAAAAAGCCAACAATCTCGAGCTAAGGAGGATTATCTTCGTCAAACTTTTCAACAATACAGAAAAGGTTCTCAAAAGATGGCTGATTATTTGAGGATCATGAAGACACATGCTGACAACCTAGAGCTTGCTGGGAGTCCGATTACTTTTTGGTCATTAATCTCCCAAGTATTGTTGGGACTTGATGAAGAGTATAATGTTGTAGTAGCAAACGCATAG

mRNA sequence

ATGGCCAACGCCTATTCAAACCCTAAGTTCAATACACCACCATTAAATCAACTCCTCACTCAAATAACCACCATTAAATTAGATCGTTCTAATTTTCTGTTATGGAAAAATTTAGCCCTACCTTTTTTGAGAGCCTATAGGTTAATAGGCCATTTGTGTGGGGAGGATCAATGCCCTCCGAAATTTTTACCCACAGCCATAGGTCCAAATGAACCCACAGCTGCAGGTGGGTTGATGCCAGCGTCAGGTCTGACGCGCAGAATCGCGTCAGGAGAGGGAGTTGCGTCATCGGAGGCGACCACAGCCTCCTCGGCGGGAGTAACACGGCCAGCTGCCACACAAGTGATGGGATGCAAAACTGCTCATGAACTTTGGACTGCAATTCAAACTCTCTTTGCTAAGGAGGATTATCTTCGTCAAACTTTTCAACAATACAGAAAAGGTTCTCAAAAGATGGCTGATTATTTGAGGATCATGAAGACACATGCTGACAACCTAGAGCTTGCTGGGAGTCCGATTACTTTTTGGTCATTAATCTCCCAAGTATTGTTGGGACTTGATGAAGAGTATAATGTTGTAGTAGCAAACGCATAG

Coding sequence (CDS)

ATGGCCAACGCCTATTCAAACCCTAAGTTCAATACACCACCATTAAATCAACTCCTCACTCAAATAACCACCATTAAATTAGATCGTTCTAATTTTCTGTTATGGAAAAATTTAGCCCTACCTTTTTTGAGAGCCTATAGGTTAATAGGCCATTTGTGTGGGGAGGATCAATGCCCTCCGAAATTTTTACCCACAGCCATAGGTCCAAATGAACCCACAGCTGCAGGTGGGTTGATGCCAGCGTCAGGTCTGACGCGCAGAATCGCGTCAGGAGAGGGAGTTGCGTCATCGGAGGCGACCACAGCCTCCTCGGCGGGAGTAACACGGCCAGCTGCCACACAAGTGATGGGATGCAAAACTGCTCATGAACTTTGGACTGCAATTCAAACTCTCTTTGCTAAGGAGGATTATCTTCGTCAAACTTTTCAACAATACAGAAAAGGTTCTCAAAAGATGGCTGATTATTTGAGGATCATGAAGACACATGCTGACAACCTAGAGCTTGCTGGGAGTCCGATTACTTTTTGGTCATTAATCTCCCAAGTATTGTTGGGACTTGATGAAGAGTATAATGTTGTAGTAGCAAACGCATAG

Protein sequence

MANAYSNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPNEPTAAGGLMPASGLTRRIASGEGVASSEATTASSAGVTRPAATQVMGCKTAHELWTAIQTLFAKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNVVVANA
Homology
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BLAST of Sed0024358 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-34
Identity = 93/196 (47.45%), Postives = 119/196 (60.71%), Query Frame = 0 

Query: 6   SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPT 65
           S   F +PPLNQLL QIT+IK+DR NFLLW+NLALP LR+Y+L  +L G+  CPP  L  
Sbjct: 18  SGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHL-- 77

Query: 66  AIGPNEPTAAGGLMPASGLTRRIASGEG--VASSEATTASSAGVTRPAATQVMGCKTAHE 125
            +  + PT   G   +        + E   V            +    A QVMG  T+ E
Sbjct: 78  -VPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRE 137

Query: 126 LWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSL 185
           LWTA+Q LF     A+ DYL+Q FQQ  KGS +M +YL++MK+HADNL LAGS ++   L
Sbjct: 138 LWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDL 197

Query: 186 ISQVLLGLDEEYNVVV 195
           +SQVL GLDEEYN +V
Sbjct: 198 VSQVLTGLDEEYNPIV 210

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BLAST of Sed0024358 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-32
Identity = 95/202 (47.03%), Postives = 116/202 (57.43%), Query Frame = 0 

Query: 23  TTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKF------LPTAIGPNEPTAAG 82
           TTIKLD+ N+LLW+NLALP LR+YRL GHL GED CPP+F          + P +    G
Sbjct: 43  TTIKLDQENYLLWRNLALPILRSYRLEGHLTGEDPCPPRFSVATDQSTATVPPGDEAGLG 102

Query: 83  G-------LMPASGLTRRIASGEGVASS---EATTASSA--------GVTRPAATQVMGC 142
           G       L P  G+T    S   +  +   E+ T             +T   A QVMG 
Sbjct: 103 GQYSGIASLTPQQGITTASNSSPVLQVNPFYESRTVVDQLLLGWLYNFMTAEVAMQVMGY 162

Query: 143 KTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPI 196
           +    LW AIQ LF     A EDYLRQ FQQ  KG+ KM +YLR+MKTH+DNL L GSP+
Sbjct: 163 ENYKYLWAAIQELFGLQSRAGEDYLRQVFQQTCKGAMKMPEYLRVMKTHSDNLGLTGSPV 222

[Close]
BLAST of Sed0024358 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-32
Identity = 90/202 (44.55%), Postives = 120/202 (59.41%), Query Frame = 0 

Query: 6   SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPT 65
           S+  F+ PPLNQ+L Q+ T+KLDR N+LLWK LALP L+ Y+L GHL GE  CP  F+ +
Sbjct: 14  SSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFVLS 73

Query: 66  AIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEATTAS--SAGVTRPAATQVMG 125
           A   N    E  A   +  +S +T RI +   E   +++          +T   A Q+MG
Sbjct: 74  ASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMG 133

Query: 126 CKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSP 185
                +LW A Q  F     A+ED+LRQ  Q  RKG+ KM +YL +MKT+ DNL   GSP
Sbjct: 134 FTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSP 193

Query: 186 ITFWSLISQVLLGLDEEYNVVV 195
           +   +LISQVLLGLDE YN+V+
Sbjct: 194 VPRRALISQVLLGLDEVYNLVI 215

[Close]
BLAST of Sed0024358 vs. NCBI nr
Match: TYJ96311.1 (uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 5.8e-26
Identity = 80/189 (42.33%), Postives = 108/189 (57.14%), Query Frame = 0 

Query: 6   SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPT 65
           S+  F+ PPLNQ+L Q+ T+KLDR N+LLWK LALP L+ Y+L GHL GE  CP  F+ +
Sbjct: 14  SSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFVLS 73

Query: 66  AIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEATTAS--SAGVTRPAATQVMG 125
           A   N    E  A   +  +S +T RI +   E   +++          +T   A Q+MG
Sbjct: 74  ASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMG 133

Query: 126 CKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSP 182
                +LW A Q  F     A+ED+LRQ  Q  RKG+ KM +YL +MKT+ DNL   GSP
Sbjct: 134 FTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSP 193

[Close]
BLAST of Sed0024358 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-22
Identity = 78/200 (39.00%), Postives = 101/200 (50.50%), Query Frame = 0 

Query: 10  FNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGP 69
           F  P LNQ+L Q+TTIKLDR N+LLWK LALP L++Y+L  HL GE  C PK +     P
Sbjct: 17  FTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIMLTTQP 76

Query: 70  NEPTAAGGLMPASGLTRRIASGEGVASSEATTASSAGVT--------------------- 129
           NE                I    G  S E +++S+A VT                     
Sbjct: 77  NE---------------SIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLGWLYN 136

Query: 130 --RPAAT-QVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMK 181
              P  T Q+MG   A +LW A Q LF     AKED+L QTFQ  +KG+  M +YLR MK
Sbjct: 137 SMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRTMK 196

[Close]
BLAST of Sed0024358 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 9.6e-35
Identity = 93/196 (47.45%), Postives = 119/196 (60.71%), Query Frame = 0 

Query: 6   SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPT 65
           S   F +PPLNQLL QIT+IK+DR NFLLW+NLALP LR+Y+L  +L G+  CPP  L  
Sbjct: 18  SGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTHL-- 77

Query: 66  AIGPNEPTAAGGLMPASGLTRRIASGEG--VASSEATTASSAGVTRPAATQVMGCKTAHE 125
            +  + PT   G   +        + E   V            +    A QVMG  T+ E
Sbjct: 78  -VPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRE 137

Query: 126 LWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSL 185
           LWTA+Q LF     A+ DYL+Q FQQ  KGS +M +YL++MK+HADNL LAGS ++   L
Sbjct: 138 LWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAGSSVSVRDL 197

Query: 186 ISQVLLGLDEEYNVVV 195
           +SQVL GLDEEYN +V
Sbjct: 198 VSQVLTGLDEEYNPIV 210

[Close]
BLAST of Sed0024358 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.6e-32
Identity = 90/202 (44.55%), Postives = 120/202 (59.41%), Query Frame = 0 

Query: 6   SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPT 65
           S+  F+ PPLNQ+L Q+ T+KLDR N+LLWK LALP L+ Y+L GHL GE  CP  F+ +
Sbjct: 14  SSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFVLS 73

Query: 66  AIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEATTAS--SAGVTRPAATQVMG 125
           A   N    E  A   +  +S +T RI +   E   +++          +T   A Q+MG
Sbjct: 74  ASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMG 133

Query: 126 CKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSP 185
                +LW A Q  F     A+ED+LRQ  Q  RKG+ KM +YL +MKT+ DNL   GSP
Sbjct: 134 FTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSP 193

Query: 186 ITFWSLISQVLLGLDEEYNVVV 195
           +   +LISQVLLGLDE YN+V+
Sbjct: 194 VPRRALISQVLLGLDEVYNLVI 215

[Close]
BLAST of Sed0024358 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 80/189 (42.33%), Postives = 108/189 (57.14%), Query Frame = 0 

Query: 6   SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPT 65
           S+  F+ PPLNQ+L Q+ T+KLDR N+LLWK LALP L+ Y+L GHL GE  CP  F+ +
Sbjct: 14  SSAGFSNPPLNQILNQLATVKLDRKNYLLWKTLALPILKGYKLEGHLTGETPCPSHFVLS 73

Query: 66  AIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEATTAS--SAGVTRPAATQVMG 125
           A   N    E  A   +  +S +T RI +   E   +++          +T   A Q+MG
Sbjct: 74  ASSSNTTVTEEGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMG 133

Query: 126 CKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSP 182
                +LW A Q  F     A+ED+LRQ  Q  RKG+ KM +YL +MKT+ DNL   GSP
Sbjct: 134 FTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSP 193

[Close]
BLAST of Sed0024358 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 8.4e-23
Identity = 78/200 (39.00%), Postives = 101/200 (50.50%), Query Frame = 0 

Query: 10  FNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGP 69
           F  P LNQ+L Q+TTIKLDR N+LLWK LALP L++Y+L  HL GE  C PK +     P
Sbjct: 17  FTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLPKIIMLTTQP 76

Query: 70  NEPTAAGGLMPASGLTRRIASGEGVASSEATTASSAGVT--------------------- 129
           NE                I    G  S E +++S+A VT                     
Sbjct: 77  NE---------------SIVENAGEPSQETSSSSTAVVTVNPKYERWITTDLLLLGWLYN 136

Query: 130 --RPAAT-QVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMK 181
              P  T Q+MG   A +LW A Q LF     AKED+L QTFQ  +KG+  M +YLR MK
Sbjct: 137 SMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFLHQTFQTTKKGNLNMEEYLRTMK 196

[Close]
BLAST of Sed0024358 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-22
Identity = 63/94 (67.02%), Postives = 71/94 (75.53%), Query Frame = 0 

Query: 107 VTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKT 166
           +T   ATQVMG + A +LW AIQ LF     A+EDYLRQ FQQ RKGS KM D+LR+MK+
Sbjct: 53  MTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKS 112

Query: 167 HADNLELAGSPITFWSLISQVLLGLDEEYNVVVA 196
           HADNL  AGSP+   SLISQVLLGLDEEYN VVA
Sbjct: 113 HADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVA 146

The following BLAST results are available for this feature:
BLAST of Sed0024358 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151683.12.0e-3447.45uncharacterized protein LOC111019598 [Momordica charantia][more]
XP_038902487.11.4e-3247.03uncharacterized protein LOC120089143 [Benincasa hispida][more]
KAA0026100.15.4e-3244.55uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa][more]
TYJ96311.15.8e-2642.33uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa][more]
KAA0067279.11.7e-2239.00uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa][more]
BLAST of Sed0024358 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0024358 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DCW49.6e-3547.45uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5A7SIT72.6e-3244.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BCH92.8e-2642.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VPY08.4e-2339.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J1D5J04.2e-2267.02uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
BLAST of Sed0024358 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 107..194
e-value: 2.2E-7
score: 30.7
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 21..191

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024358.1Sed0024358.1mRNA