Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCGCGACACCTTTGAGAATTATCTCTTGGTAAGCAAATAATTTCCAATAACTTATTTTGAACTACTTGTTTTCTTTTGTTTATTATACATACCATACTTATAAGATCTTCTCCATTTATTATTTGTATACAGAGTCATCCGAATGCAAAAGGGCTTTTGAACAAGCCGTTTCCCTACATGGACCAATTGTCCATCGTCTTCAATTCAGATGCTGCCGAGCATAGTTTATTCAACTCTAATGATGTACATGAAGCAACTCCGATAAGGCAGGTGGTGCAGGAGGCCAAAATAGAAGACGTGGCTGAACTCGGATCGGGGGATGCTGGTGGTGAGGATGACGCGTTCCCAACTCCGTCATCAAGACCTAGTCTTTCTAGGCAGAACAATCAACCCAATGGGATTAAGAGGAAAAGAAGTAACATAGATGACATTCTACAGAAAGCTGTAGACGTTCAACGAGCTGCATTGGAGCAGATGCTCGCATTGCAGCAAGATTGGGCCTATTCGATGGAAAGAAAACAAATGGAAGTCATGCAACGAGTAGACCAACTTGTTGGATTCACAGAGAATCAAAAACGACTAATATGTGACGAACTATGCCTAAATAGAGACAAGGTCACTTACTTCCTGAATATGAAACCTGAATGGCACGAATCGTACTGCGCTGACCTGATCCTCAGAATTAATGCTCGCGGTCCTGGATGA
mRNA sequence
ATGGACCGCGACACCTTTGAGAATTATCTCTTGAGTCATCCGAATGCAAAAGGGCTTTTGAACAAGCCGTTTCCCTACATGGACCAATTGTCCATCGTCTTCAATTCAGATGCTGCCGAGCATAGTTTATTCAACTCTAATGATGTACATGAAGCAACTCCGATAAGGCAGGTGGTGCAGGAGGCCAAAATAGAAGACGTGGCTGAACTCGGATCGGGGGATGCTGGTGGTGAGGATGACGCGTTCCCAACTCCGTCATCAAGACCTAGTCTTTCTAGGCAGAACAATCAACCCAATGGGATTAAGAGGAAAAGAAGTAACATAGATGACATTCTACAGAAAGCTGTAGACGTTCAACGAGCTGCATTGGAGCAGATGCTCGCATTGCAGCAAGATTGGGCCTATTCGATGGAAAGAAAACAAATGGAAGTCATGCAACGAGTAGACCAACTTGTTGGATTCACAGAGAATCAAAAACGACTAATATGTGACGAACTATGCCTAAATAGAGACAAGGTCACTTACTTCCTGAATATGAAACCTGAATGGCACGAATCGTACTGCGCTGACCTGATCCTCAGAATTAATGCTCGCGGTCCTGGATGA
Coding sequence (CDS)
ATGGACCGCGACACCTTTGAGAATTATCTCTTGAGTCATCCGAATGCAAAAGGGCTTTTGAACAAGCCGTTTCCCTACATGGACCAATTGTCCATCGTCTTCAATTCAGATGCTGCCGAGCATAGTTTATTCAACTCTAATGATGTACATGAAGCAACTCCGATAAGGCAGGTGGTGCAGGAGGCCAAAATAGAAGACGTGGCTGAACTCGGATCGGGGGATGCTGGTGGTGAGGATGACGCGTTCCCAACTCCGTCATCAAGACCTAGTCTTTCTAGGCAGAACAATCAACCCAATGGGATTAAGAGGAAAAGAAGTAACATAGATGACATTCTACAGAAAGCTGTAGACGTTCAACGAGCTGCATTGGAGCAGATGCTCGCATTGCAGCAAGATTGGGCCTATTCGATGGAAAGAAAACAAATGGAAGTCATGCAACGAGTAGACCAACTTGTTGGATTCACAGAGAATCAAAAACGACTAATATGTGACGAACTATGCCTAAATAGAGACAAGGTCACTTACTTCCTGAATATGAAACCTGAATGGCACGAATCGTACTGCGCTGACCTGATCCTCAGAATTAATGCTCGCGGTCCTGGATGA
Protein sequence
MDRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGIKRKRSNIDDILQKAVDVQRAALEQMLALQQDWAYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLILRINARGPG
Homology
BLAST of Sed0024321 vs. NCBI nr
Match:
XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])
HSP 1 Score: 70.1 bits (170), Expect = 2.5e-08
Identity = 61/199 (30.65%), Postives = 99/199 (49.75%), Query Frame = 0
Query: 1 MDRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEA-TPIRQVV 60
++R+ F+ ++ SHPNAKG+ KPFP+ D LS VF D A+ ++ +V + +P+
Sbjct: 99 VEREIFDLWVRSHPNAKGMWKKPFPHYDDLSAVFGKDRAD---CHTPEVRQTESPLN--- 158
Query: 61 QEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGIKRKRSNID----DILQKA 120
Q+ E+ AE +G A + PT SSR G KRKRS+ DI++
Sbjct: 159 QDEIDEEPAEQSTGRA-----SVPTESSR-----------GSKRKRSSFQVEMIDIVKST 218
Query: 121 VDVQRAALEQMLALQQDWAYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTY 180
V++Q + + LA Q+ Y +E K EV+ + + EN + + D + + K
Sbjct: 219 VEMQSTHMGR-LASWQNEKYELELK--EVVNAIYNIDDLEENDQVTLIDLIVTDIQKTDC 272
Query: 181 FLNMKPEWHESYCADLILR 195
FL + + YC L+ R
Sbjct: 279 FLAVPEHARKRYCLRLLGR 272
BLAST of Sed0024321 vs. NCBI nr
Match:
XP_024022021.1 (uncharacterized protein LOC112091787 [Morus notabilis])
HSP 1 Score: 66.6 bits (161), Expect = 2.7e-07
Identity = 56/205 (27.32%), Postives = 92/205 (44.88%), Query Frame = 0
Query: 1 MDRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQ 60
+++D F+ ++ SHP+AKGL NKPFPY D+L +VF +D A + A + +V
Sbjct: 148 VEKDVFDEWVKSHPSAKGLRNKPFPYHDELGLVFGNDRA--------NGQGAMGLTDMVD 207
Query: 61 EAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGI---KRKRSNIDDILQKAV- 120
+ E V +L D+ T S + + P + KRKRS D+L A+
Sbjct: 208 DIDKETVNDLDYDPLLMSDENMDTASIGGPSVQTTSTPLALGRKKRKRSQRGDVLVDALT 267
Query: 121 -------DVQRAALEQMLALQQDWAYSME--RKQMEVMQRVDQLVGFTENQKRLICDELC 180
D+ A E + L + Y + ++M+V V ++ G T Q+ + L
Sbjct: 268 EIVHKFSDMYAMAGENIGRLANCFQYEADGAARRMQVFDEVKKVEGLTNAQRVRVGKLLV 327
Query: 181 LNRDKVTYFLNMKPEWHESYCADLI 193
N D YF + E+ + L+
Sbjct: 328 QNHDYTNYFFTLDDEFKLDFLLSLL 344
BLAST of Sed0024321 vs. NCBI nr
Match:
KAA0048778.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK31556.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 63.2 bits (152), Expect = 3.0e-06
Identity = 52/195 (26.67%), Postives = 82/195 (42.05%), Query Frame = 0
Query: 2 DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQE 61
+++ F+N++ SHP AKGLLNKPFPY D+L+ VF D V
Sbjct: 62 EKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDR--------------------VTG 121
Query: 62 AKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGIKRKRSNIDDILQKAVDVQRA 121
IE A++GS + GG D F +G KRKR + D KA+ +
Sbjct: 122 QFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVTGS-SGSKRKRESQRDFDVKAIHLALD 181
Query: 122 ALEQMLALQQDW----AYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFL 181
+ L +W + + E + + +++ T K L+ L D + F+
Sbjct: 182 QTNEQLRQIAEWPARNLANDNHVRTEFFRILREMLELTSLDKALLQRHLLSRMDDLRGFV 235
Query: 182 NMKPEWHESYCADLI 193
M + E +C L+
Sbjct: 242 LMPEDEREGFCRVLL 235
BLAST of Sed0024321 vs. NCBI nr
Match:
XP_022158565.1 (uncharacterized protein LOC111025018 [Momordica charantia])
HSP 1 Score: 62.0 bits (149), Expect = 6.8e-06
Identity = 53/206 (25.73%), Postives = 96/206 (46.60%), Query Frame = 0
Query: 2 DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQE 61
+++ F++++ SHPNAKGL NKP P+ D L++ F D A + + ++ + ++
Sbjct: 17 EKEVFDDWVKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPVDMASSAAATIAED 76
Query: 62 AKIE-------DVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGIKRKR----SNIDD 121
A E D + + E+D TP+S+P++ + G KRKR S + D
Sbjct: 77 AHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSS---GGSKRKRSGYTSEMVD 136
Query: 122 ILQKAVDVQRAALEQMLALQQDWAYSMERKQME----VMQRVDQLVGFTENQKRLICDEL 181
+++ + +Q A LE+M W E K++ V ++ Q+ N + L
Sbjct: 137 VVRTNMRMQTAHLEKMAT----WPDKKEEKKIARRKIVHDQLKQIPNLEANDYVRLVGIL 196
Query: 182 CLNRDKVTYFLNMKPEWHESYCADLI 193
N K FL + E+ + +C L+
Sbjct: 197 MTNVKKSISFLEVPIEFKKMFCMQLL 214
BLAST of Sed0024321 vs. NCBI nr
Match:
XP_010677760.1 (PREDICTED: uncharacterized protein At2g29880-like [Beta vulgaris subsp. vulgaris])
HSP 1 Score: 61.2 bits (147), Expect = 1.2e-05
Identity = 51/198 (25.76%), Postives = 84/198 (42.42%), Query Frame = 0
Query: 6 FENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAA-------EHSLFNSNDVHEATPIRQV 65
++ ++ SH NA GL NKPFP+ D+L +F D A H + D E Q
Sbjct: 106 WDEWIKSHKNAIGLRNKPFPFFDELGKIFGKDRAVGNESANVHDVLEEMDEEEREEEGQE 165
Query: 66 VQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGIKRKRSNIDDILQKAVDV 125
V + +E++ G P PS+ PS R L+K DV
Sbjct: 166 VPQYSLEEINPSSQNSPMG-----PPPSTTPSTRRTKKARTETIEVLKEFSTKLEKISDV 225
Query: 126 QRAALEQMLALQQDWAYSME--RKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYF 185
AA E + L + + + ++M+V V ++ G T L+ ++ LN +V +F
Sbjct: 226 MEAASEHIGRLANCFQHESDSAERRMKVTNEVMKMEGLTPTDVILVSKKIALNPLEVDFF 285
Query: 186 LNMKPE-WHESYCADLIL 194
++ E + +Y L+L
Sbjct: 286 FSLPDEDYKYAYVQGLLL 298
BLAST of Sed0024321 vs. ExPASy TrEMBL
Match:
A0A5A7U0P0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00450 PE=4 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 52/195 (26.67%), Postives = 82/195 (42.05%), Query Frame = 0
Query: 2 DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQE 61
+++ F+N++ SHP AKGLLNKPFPY D+L+ VF D V
Sbjct: 62 EKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGHDR--------------------VTG 121
Query: 62 AKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGIKRKRSNIDDILQKAVDVQRA 121
IE A++GS + GG D F +G KRKR + D KA+ +
Sbjct: 122 QFIETFADVGSNEPGGGYDRFDMGDGNEEFPPVTGS-SGSKRKRESQRDFDVKAIHLALD 181
Query: 122 ALEQMLALQQDW----AYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFL 181
+ L +W + + E + + +++ T K L+ L D + F+
Sbjct: 182 QTNEQLRQIAEWPARNLANDNHVRTEFFRILREMLELTSLDKALLQRHLLSRMDDLRGFV 235
Query: 182 NMKPEWHESYCADLI 193
M + E +C L+
Sbjct: 242 LMPEDEREGFCRVLL 235
BLAST of Sed0024321 vs. ExPASy TrEMBL
Match:
A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)
HSP 1 Score: 62.0 bits (149), Expect = 3.3e-06
Identity = 53/206 (25.73%), Postives = 96/206 (46.60%), Query Frame = 0
Query: 2 DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQE 61
+++ F++++ SHPNAKGL NKP P+ D L++ F D A + + ++ + ++
Sbjct: 17 EKEVFDDWVKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPVDMASSAAATIAED 76
Query: 62 AKIE-------DVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGIKRKR----SNIDD 121
A E D + + E+D TP+S+P++ + G KRKR S + D
Sbjct: 77 AHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSS---GGSKRKRSGYTSEMVD 136
Query: 122 ILQKAVDVQRAALEQMLALQQDWAYSMERKQME----VMQRVDQLVGFTENQKRLICDEL 181
+++ + +Q A LE+M W E K++ V ++ Q+ N + L
Sbjct: 137 VVRTNMRMQTAHLEKMAT----WPDKKEEKKIARRKIVHDQLKQIPNLEANDYVRLVGIL 196
Query: 182 CLNRDKVTYFLNMKPEWHESYCADLI 193
N K FL + E+ + +C L+
Sbjct: 197 MTNVKKSISFLEVPIEFKKMFCMQLL 214
BLAST of Sed0024321 vs. ExPASy TrEMBL
Match:
A0A5A7T4C3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001830 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 49/195 (25.13%), Postives = 83/195 (42.56%), Query Frame = 0
Query: 2 DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQE 61
+++ F+N++ SHP KGLLNKPFPY D+L+ VF D A +
Sbjct: 104 EKELFDNWVRSHPTVKGLLNKPFPYYDKLTYVFGRDRA--------------------TD 163
Query: 62 AKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGIKRKRSNIDDILQKAVDVQRA 121
E A++GS + GE D F +G KRKR + D +A+ +
Sbjct: 164 RSTETFADVGSNEPDGEYDRFDMGDGNEEFPPVTGS-SGSKRKRGSQRDFDVEAIHLTLD 223
Query: 122 ALEQMLALQQDW-AYSM---ERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFL 181
+ L +W A+++ + E + + ++ T + L+ L D + F+
Sbjct: 224 QTNEQLRQITEWPAHNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFV 277
Query: 182 NMKPEWHESYCADLI 193
M + E +C L+
Sbjct: 284 LMPKDEREGFCRVLL 277
BLAST of Sed0024321 vs. ExPASy TrEMBL
Match:
A0A5A7SXI6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00820 PE=4 SV=1)
HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 56/218 (25.69%), Postives = 87/218 (39.91%), Query Frame = 0
Query: 2 DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQE 61
+++ F+N++ SHP AKGLLNKPFPY D+L+ VF D A
Sbjct: 77 EKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRF------------------ 136
Query: 62 AKIEDVAELGSGDAGGEDDAF----------------------PTPSSRPS-LSRQNNQP 121
E A++GS + GG D F +SRPS S
Sbjct: 137 --AETFADVGSNEPGGGYDRFDMGDGNEDFRPVYSQGVDISQDDERASRPSRASEGRTGS 196
Query: 122 NGIKRKRSNIDDILQKAVDVQRAALEQMLALQQDW----AYSMERKQMEVMQRVDQLVGF 181
+G KRKR + D KA+ + + L +W + +ME + + ++
Sbjct: 197 SGSKRKRGSQRDFELKAIHLALDQTNEQLRQIAEWPARNLANDNHMRMEFFRILREMPEL 256
Query: 182 TENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLI 193
T + L+ L D + F+ M + E +C L+
Sbjct: 257 TSLDRALLQRHLLSRMDDLRGFVLMPEDEREEFCRVLL 274
BLAST of Sed0024321 vs. ExPASy TrEMBL
Match:
A0A5A7UFK7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00820 PE=4 SV=1)
HSP 1 Score: 58.9 bits (141), Expect = 2.8e-05
Identity = 55/218 (25.23%), Postives = 87/218 (39.91%), Query Frame = 0
Query: 2 DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQE 61
+++ F+N++ SHP AKGLLNKPFPY D+L+ VF D A
Sbjct: 104 EKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGRDRATSRF------------------ 163
Query: 62 AKIEDVAELGSGDAGGEDDAF----------------------PTPSSRPS-LSRQNNQP 121
E A++GS + GG D F +SRPS S +
Sbjct: 164 --AETFADVGSNEPGGGYDRFDMGDGNEDFSPVYSQGIDLSQDDVRASRPSRASEGRTRS 223
Query: 122 NGIKRKRSNIDDILQKAVDVQRAALEQMLALQQDWAYSM----ERKQMEVMQRVDQLVGF 181
+G KRKR + D +A+ + + L +W S + E + + ++
Sbjct: 224 SGSKRKRGSQRDFELEAIHLALDQTNEQLRQIVEWPASNLANDNHVRTEFFRILREMPEL 283
Query: 182 TENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLI 193
T + L+ L D + F+ M + E +C L+
Sbjct: 284 TSLDRALLQRHLLSRMDDLRGFVLMPEDEREEFCRVLL 301
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038887234.1 | 2.5e-08 | 30.65 | uncharacterized protein LOC120077425 [Benincasa hispida] | [more] |
| XP_024022021.1 | 2.7e-07 | 27.32 | uncharacterized protein LOC112091787 [Morus notabilis] | [more] |
| KAA0048778.1 | 3.0e-06 | 26.67 | retrotransposon protein [Cucumis melo var. makuwa] >TYK31556.1 retrotransposon p... | [more] |
| XP_022158565.1 | 6.8e-06 | 25.73 | uncharacterized protein LOC111025018 [Momordica charantia] | [more] |
| XP_010677760.1 | 1.2e-05 | 25.76 | PREDICTED: uncharacterized protein At2g29880-like [Beta vulgaris subsp. vulgaris... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U0P0 | 1.5e-06 | 26.67 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A6J1DW73 | 3.3e-06 | 25.73 | uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
| A0A5A7T4C3 | 1.2e-05 | 25.13 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7SXI6 | 1.2e-05 | 25.69 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7UFK7 | 2.8e-05 | 25.23 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
