Sed0024288 (gene) Chayote v1

Overview


Name	Sed0024288
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Location	LG04: 36485543 .. 36486523 (+)
RNA-Seq Expression	Sed0024288
Synteny	Sed0024288

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCTGGAGTTAGCTGAACAGGAAGCCCAGGAGATCTTCGAGCTGGAAGAAGATGATGTCTCAACGTATGAAAGGGAGTTAGATGAGGTAGTAGCGTGCAAAGTGCTTTCTTTAAATTAGGTCAGCTCCGATGTTTTTAAGAAAGTTATTCCTAGGATTTGGAACATTGAAAACAAAGTTTCAATTGAAGCCGTGGGAGCTAATGTTTTCATTTGCTCTTTTGAGAACAAGATCTTGAAGGAAAGGATAATTATGGCAAGCCCATGGATTTACAATGATGCAGTGATCTTGTTCGAAGCTATGTCTGGTGATAAAAGGGTTTCTAAGATGGAATTCGCAACTGGGGCTTTCTGGATTCAATTACACGATGTTACTCCGGCGTGCCATACAGAAAGTAATGCAAGGAAGTTGGGGAAAATGTTAGGGGAATTTGTAGGGTGGGATAGTGAAGGGGATCAAAAAGATAGGGGAAAGTTTTTAGGGTTGAAAGTAGCCATTGACGTTCGAGCTCCCTTGCATAAAGCTCTGAAACTGAAAAGCGGGGCAATGGCAGCAGAGAAATGGGTAAGGTTATCTTACGAAGAACTCTCAATCTTTTGTCGAGGCTGTGGAAGGGTCGGACACAAGGCCAGCAAGTGTAGTTTAGTGGTGATTGGGGAGGGGAGGCCGCTTCCATTTGGGGAAGAGCTTCGGGAACCGACGATTATTTTTAGGGGTAAAGGTATGGTTGTGAATCGTTTTCCTGGGAGAGGGAGAGGGAGAGGGCGAGGAAGAAGAGAGGATTATCAAGGAGGAATGGAAGAGGTCGATGAAAGAGTGGTTGATAGAGGCGGTGAAGGTGCTCGAGGAGGGGAGATAGGACAGCCAAGTGGGAGGGCTCCGGTTGAGATTCGCCTGAAGTTCGCCGATAACGTGTCGCCAGAAATTGCATCAGGCGAAGACGAGGACATTGAGGGAGGAAGTCAGAGGTTGTAG

mRNA sequence

ATGGAGAATCTGGAGTTAGCTGAACAGGAAGCCCAGGAGATCTTCGAGCTGGAAGAAGATGATGTCTCAACGTATGAAAGGGAGTTAGATGAGGTCAGCTCCGATGTTTTTAAGAAAGTTATTCCTAGGATTTGGAACATTGAAAACAAAGTTTCAATTGAAGCCGTGGGAGCTAATGTTTTCATTTGCTCTTTTGAGAACAAGATCTTGAAGGAAAGGATAATTATGGCAAGCCCATGGATTTACAATGATGCAGTGATCTTGTTCGAAGCTATGTCTGGTGATAAAAGGGTTTCTAAGATGGAATTCGCAACTGGGGCTTTCTGGATTCAATTACACGATGTTACTCCGGCGTGCCATACAGAAAGTAATGCAAGGAAGTTGGGGAAAATGTTAGGGGAATTTGTAGGGTGGGATAGTGAAGGGGATCAAAAAGATAGGGGAAAGTTTTTAGGGTTGAAAGTAGCCATTGACGTTCGAGCTCCCTTGCATAAAGCTCTGAAACTGAAAAGCGGGGCAATGGCAGCAGAGAAATGGGTAAGGTTATCTTACGAAGAACTCTCAATCTTTTGTCGAGGCTGTGGAAGGGTCGGACACAAGGCCAGCAAGTGTAGTTTAGTGGTGATTGGGGAGGGGAGGCCGCTTCCATTTGGGGAAGAGCTTCGGGAACCGACGATTATTTTTAGGGGTAAAGGTATGGTTGTGAATCGTTTTCCTGGGAGAGGGAGAGGGAGAGGGCGAGGAAGAAGAGAGGATTATCAAGGAGGAATGGAAGAGGTCGATGAAAGAGTGGTTGATAGAGGCGGTGAAGGTGCTCGAGGAGGGGAGATAGGACAGCCAAGTGGGAGGGCTCCGGTTGAGATTCGCCTGAAGTTCGCCGATAACGTGTCGCCAGAAATTGCATCAGGCGAAGACGAGGACATTGAGGGAGGAAGTCAGAGGTTGTAG

Coding sequence (CDS)

ATGGAGAATCTGGAGTTAGCTGAACAGGAAGCCCAGGAGATCTTCGAGCTGGAAGAAGATGATGTCTCAACGTATGAAAGGGAGTTAGATGAGGTCAGCTCCGATGTTTTTAAGAAAGTTATTCCTAGGATTTGGAACATTGAAAACAAAGTTTCAATTGAAGCCGTGGGAGCTAATGTTTTCATTTGCTCTTTTGAGAACAAGATCTTGAAGGAAAGGATAATTATGGCAAGCCCATGGATTTACAATGATGCAGTGATCTTGTTCGAAGCTATGTCTGGTGATAAAAGGGTTTCTAAGATGGAATTCGCAACTGGGGCTTTCTGGATTCAATTACACGATGTTACTCCGGCGTGCCATACAGAAAGTAATGCAAGGAAGTTGGGGAAAATGTTAGGGGAATTTGTAGGGTGGGATAGTGAAGGGGATCAAAAAGATAGGGGAAAGTTTTTAGGGTTGAAAGTAGCCATTGACGTTCGAGCTCCCTTGCATAAAGCTCTGAAACTGAAAAGCGGGGCAATGGCAGCAGAGAAATGGGTAAGGTTATCTTACGAAGAACTCTCAATCTTTTGTCGAGGCTGTGGAAGGGTCGGACACAAGGCCAGCAAGTGTAGTTTAGTGGTGATTGGGGAGGGGAGGCCGCTTCCATTTGGGGAAGAGCTTCGGGAACCGACGATTATTTTTAGGGGTAAAGGTATGGTTGTGAATCGTTTTCCTGGGAGAGGGAGAGGGAGAGGGCGAGGAAGAAGAGAGGATTATCAAGGAGGAATGGAAGAGGTCGATGAAAGAGTGGTTGATAGAGGCGGTGAAGGTGCTCGAGGAGGGGAGATAGGACAGCCAAGTGGGAGGGCTCCGGTTGAGATTCGCCTGAAGTTCGCCGATAACGTGTCGCCAGAAATTGCATCAGGCGAAGACGAGGACATTGAGGGAGGAAGTCAGAGGTTGTAG

Protein sequence

MENLELAEQEAQEIFELEEDDVSTYERELDEVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGEGRPLPFGEELREPTIIFRGKGMVVNRFPGRGRGRGRGRREDYQGGMEEVDERVVDRGGEGARGGEIGQPSGRAPVEIRLKFADNVSPEIASGEDEDIEGGSQRL

Homology

[Close]

BLAST of Sed0024288 vs. NCBI nr
Match: TXG46581.1 (hypothetical protein EZV62_027919 [Acer yangbiense])

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-25
Identity = 63/191 (32.98%), Postives = 104/191 (54.45%), Query Frame = 0


Query: 32  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEA 91
           ++ +VFK+V+ +IW +   + IE VG N F   F+N   + R+++  PW +++ +I+   
Sbjct: 51  INREVFKRVLSKIWKVREGIIIEVVGENTFTFHFQNLEDRRRVLIGRPWSFDNFLIVLLE 110

Query: 92  MSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFL 151
             G   +  M+F   AFWIQ+H+V   C T+     LG M+G+    D        GK+L
Sbjct: 111 PYGKGDIMNMKFERAAFWIQIHNVPLLCMTKKIGHFLGSMIGDVEDIDEGASGDCDGKYL 170

Query: 152 GLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGE 211
            ++VAI+V  PLH+ L++       E  + L YE L   C  CG++GH+  +C+  + G+
Sbjct: 171 RVRVAINVVRPLHQILRVDVIGDGVESIMLLRYECLPDHCHQCGKLGHRTMECT--ITGD 230

Query: 212 GRPLPFGEELR 223
              LPFG  L+
Sbjct: 231 TNELPFGAWLK 239

[Close]

BLAST of Sed0024288 vs. NCBI nr
Match: TXG48193.1 (hypothetical protein EZV62_027487 [Acer yangbiense])

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-25
Identity = 80/268 (29.85%), Postives = 136/268 (50.75%), Query Frame = 0


Query: 2   ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENK 61
           ENL L +++A  + E+ ED +   + ++D           +V+ + FK +I +IWN   +
Sbjct: 11  ENLSLEDEDA-AVHEITEDYIQDGDEDVDRCLVGKVLTGKKVNREAFKGLIEQIWNQFGQ 70

Query: 62  VSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWI 121
           V +E VG N F+  F NK  + ++    PW++  ++I+ E   G   ++K++F    FW+
Sbjct: 71  VEVELVGENTFMFHFTNKEYRNKVWNRGPWLFGKSLIVLEKPKGPGDITKLKFNQADFWV 130

Query: 122 QLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLK 181
           Q+HD+   C  +   + L + +GE V   +E  ++  GK++ +KV +D+  PL + L++K
Sbjct: 131 QIHDIPIMCMNQRTTKWLAEYIGEVVEIPTE-SRECWGKYVRVKVQVDITKPLKRWLRIK 190

Query: 182 SGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTI 241
            G       V L YE L  FC  CGR+GH   +C    +     +G+   FG  +R  T 
Sbjct: 191 LGKYEEITMVALKYERLPDFCFACGRIGHSVRECLDEDAKRAALDGQQTKFGSWMR-ATP 250

Query: 242 IFRGKGMVVNRFPGRGRGRGR---GRRE 252
           I + K   ++   G    RGR   G RE
Sbjct: 251 IDKSKTKSISLTTGSSSERGRSVEGSRE 275

[Close]

BLAST of Sed0024288 vs. NCBI nr
Match: TXG57799.1 (hypothetical protein EZV62_015628 [Acer yangbiense])

HSP 1 Score: 126.7 bits (317), Expect = 3.5e-25
Identity = 75/236 (31.78%), Postives = 122/236 (51.69%), Query Frame = 0


Query: 2   ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENK 61
           E L + +++ + + E+ E+D+     ++D           +V+ D FK +I +IW+   +
Sbjct: 11  ERLSIVDED-EMVHEIAEEDIQDGAEDVDKCLVGRVLSGKKVNRDAFKGLIEQIWSPFGQ 70

Query: 62  VSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWI 121
           V +E VG N F+  F NK  + R+ +  PW + +++I+ E   G   +SK+ F     W+
Sbjct: 71  VEVELVGENTFMFYFINKEDRNRVWLRGPWHFGNSLIVLEKPEGSGNISKLGFNRADIWV 130

Query: 122 QLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLK 181
           Q+HD+   C      R L + +GE V   SE  ++  GK++ +KV ID+  PL + LKLK
Sbjct: 131 QIHDIPIMCMNRRTTRWLAEQIGEVVEIPSE-SRECWGKYIRVKVKIDITKPLKQWLKLK 190

Query: 182 SGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKC----SLVVIGEGRPLPFGEELR 223
            G       V L YE LS FC  CGR+GH   +C    +  +  EG P+ F   L+
Sbjct: 191 LGKFEEVTMVGLKYERLSEFCFTCGRIGHGNKECLDEEARKLALEGLPMKFRSWLK 244

[Close]

BLAST of Sed0024288 vs. NCBI nr
Match: TXG53376.1 (hypothetical protein EZV62_022545 [Acer yangbiense])

HSP 1 Score: 126.7 bits (317), Expect = 3.5e-25
Identity = 89/270 (32.96%), Postives = 138/270 (51.11%), Query Frame = 0


Query: 2   ENLELAEQEAQEIFELEE---DDVSTYEREL-------DEVSSDVFKKVIPRIWNIENKV 61
           ENL LAE++   +   EE   D V    R L        +V+ + FK +I +IW+   +V
Sbjct: 11  ENLSLAEEDGVVLEMSEETSIDGVKDVNRCLVGKVLSYKKVNREAFKGLIEQIWSPFGQV 70

Query: 62  SIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWIQ 121
            +E+VG N+F+  F N   + R++   PW + +++I+ E  +G+  VSK+ F    FW+Q
Sbjct: 71  EVESVGDNLFMFYFNNGEDRNRVLQRGPWHFGNSLIVLEKSTGEGNVSKLGFNRADFWVQ 130

Query: 122 LHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKS 181
           +HD+   C     A+ L K +GE V   SE  ++  GKF+ +KV ID+  PL + LKLK 
Sbjct: 131 IHDIPILCMNRRTAKWLAKQIGEVVEIPSE-SRECWGKFMWVKVRIDILKPLKRWLKLKI 190

Query: 182 GAMAAEKWVRLSYEELSIFCRGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTII 241
           G       V L YE+L  FC  CGR+G+   +C    +  +  EG    FG  L+  T +
Sbjct: 191 GQTDEVTLVSLKYEKLPDFCYACGRMGYGMKECLDEEARKMALEGPLTRFGSWLK-ATAL 250

Query: 242 FRGKGMVVNRFPGRG--RGRGRGRREDYQG 256
            + K  + ++  G    R R  G   D +G
Sbjct: 251 DKSKPRLNSQGNGSSSDRARSSGTSHDIEG 278

[Close]

BLAST of Sed0024288 vs. NCBI nr
Match: TXG62563.1 (hypothetical protein EZV62_009557 [Acer yangbiense])

HSP 1 Score: 125.9 bits (315), Expect = 6.0e-25
Identity = 82/255 (32.16%), Postives = 131/255 (51.37%), Query Frame = 0


Query: 32  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEA 91
           V+ + FK V+ RIW+I   V IEA+  N+F C F N   ++RI+   PW ++ A+I+FE 
Sbjct: 92  VNREAFKDVMKRIWHINGGVEIEAIKDNIFECHFTNLEARKRILSGGPWRFDRAIIIFEE 151

Query: 92  MSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFL 151
             G   +  M F    FW+Q+H+++  C +E     LG M+ E    D E  +   G+F+
Sbjct: 152 PMGTGDIDNMFFNKTKFWVQVHNLSLLCMSEEIGLFLGNMIREVRNIDLEAGKNGSGRFI 211

Query: 152 GLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGE 211
            ++V I V  PL ++L++      +   + L YE +  FC  C R+GH   +C+  V G+
Sbjct: 212 RVRVEIKVDEPLRRSLRVDLLGDGSITTMLLRYERVPDFCYKCNRLGHTLGECT--VPGD 271

Query: 212 GRPLPFGEELREPTIIFRGKGMVVNRFPGRGRGR-GRGRREDYQGGMEEVDERVVDRGGE 271
            + +     +R    + R      N F G+G GR  +GRR+  +GG      R V R  +
Sbjct: 272 NKEVTKEANIRLCNWM-RTTSPPKNHFYGKGNGRLQQGRRDWREGGYGFSGPRDVSRNQD 331

Query: 272 GAR-GGEIGQP-SGR 284
             R G ++ +P SGR
Sbjct: 332 NWRTGKKLSEPDSGR 343

[Close]

BLAST of Sed0024288 vs. ExPASy TrEMBL
Match: A0A5C7GP26 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027919 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.8e-26
Identity = 63/191 (32.98%), Postives = 104/191 (54.45%), Query Frame = 0


Query: 32  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEA 91
           ++ +VFK+V+ +IW +   + IE VG N F   F+N   + R+++  PW +++ +I+   
Sbjct: 51  INREVFKRVLSKIWKVREGIIIEVVGENTFTFHFQNLEDRRRVLIGRPWSFDNFLIVLLE 110

Query: 92  MSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFL 151
             G   +  M+F   AFWIQ+H+V   C T+     LG M+G+    D        GK+L
Sbjct: 111 PYGKGDIMNMKFERAAFWIQIHNVPLLCMTKKIGHFLGSMIGDVEDIDEGASGDCDGKYL 170

Query: 152 GLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGE 211
            ++VAI+V  PLH+ L++       E  + L YE L   C  CG++GH+  +C+  + G+
Sbjct: 171 RVRVAINVVRPLHQILRVDVIGDGVESIMLLRYECLPDHCHQCGKLGHRTMECT--ITGD 230

Query: 212 GRPLPFGEELR 223
              LPFG  L+
Sbjct: 231 TNELPFGAWLK 239

[Close]

BLAST of Sed0024288 vs. ExPASy TrEMBL
Match: A0A5C7GU64 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027487 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.9e-26
Identity = 80/268 (29.85%), Postives = 136/268 (50.75%), Query Frame = 0


Query: 2   ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENK 61
           ENL L +++A  + E+ ED +   + ++D           +V+ + FK +I +IWN   +
Sbjct: 11  ENLSLEDEDA-AVHEITEDYIQDGDEDVDRCLVGKVLTGKKVNREAFKGLIEQIWNQFGQ 70

Query: 62  VSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWI 121
           V +E VG N F+  F NK  + ++    PW++  ++I+ E   G   ++K++F    FW+
Sbjct: 71  VEVELVGENTFMFHFTNKEYRNKVWNRGPWLFGKSLIVLEKPKGPGDITKLKFNQADFWV 130

Query: 122 QLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLK 181
           Q+HD+   C  +   + L + +GE V   +E  ++  GK++ +KV +D+  PL + L++K
Sbjct: 131 QIHDIPIMCMNQRTTKWLAEYIGEVVEIPTE-SRECWGKYVRVKVQVDITKPLKRWLRIK 190

Query: 182 SGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTI 241
            G       V L YE L  FC  CGR+GH   +C    +     +G+   FG  +R  T 
Sbjct: 191 LGKYEEITMVALKYERLPDFCFACGRIGHSVRECLDEDAKRAALDGQQTKFGSWMR-ATP 250

Query: 242 IFRGKGMVVNRFPGRGRGRGR---GRRE 252
           I + K   ++   G    RGR   G RE
Sbjct: 251 IDKSKTKSISLTTGSSSERGRSVEGSRE 275

[Close]

BLAST of Sed0024288 vs. ExPASy TrEMBL
Match: A0A5C7HB59 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022545 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-25
Identity = 89/270 (32.96%), Postives = 138/270 (51.11%), Query Frame = 0


Query: 2   ENLELAEQEAQEIFELEE---DDVSTYEREL-------DEVSSDVFKKVIPRIWNIENKV 61
           ENL LAE++   +   EE   D V    R L        +V+ + FK +I +IW+   +V
Sbjct: 11  ENLSLAEEDGVVLEMSEETSIDGVKDVNRCLVGKVLSYKKVNREAFKGLIEQIWSPFGQV 70

Query: 62  SIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWIQ 121
            +E+VG N+F+  F N   + R++   PW + +++I+ E  +G+  VSK+ F    FW+Q
Sbjct: 71  EVESVGDNLFMFYFNNGEDRNRVLQRGPWHFGNSLIVLEKSTGEGNVSKLGFNRADFWVQ 130

Query: 122 LHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKS 181
           +HD+   C     A+ L K +GE V   SE  ++  GKF+ +KV ID+  PL + LKLK 
Sbjct: 131 IHDIPILCMNRRTAKWLAKQIGEVVEIPSE-SRECWGKFMWVKVRIDILKPLKRWLKLKI 190

Query: 182 GAMAAEKWVRLSYEELSIFCRGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTII 241
           G       V L YE+L  FC  CGR+G+   +C    +  +  EG    FG  L+  T +
Sbjct: 191 GQTDEVTLVSLKYEKLPDFCYACGRMGYGMKECLDEEARKMALEGPLTRFGSWLK-ATAL 250

Query: 242 FRGKGMVVNRFPGRG--RGRGRGRREDYQG 256
            + K  + ++  G    R R  G   D +G
Sbjct: 251 DKSKPRLNSQGNGSSSDRARSSGTSHDIEG 278

[Close]

BLAST of Sed0024288 vs. ExPASy TrEMBL
Match: A0A5C7HLY4 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_015628 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-25
Identity = 75/236 (31.78%), Postives = 122/236 (51.69%), Query Frame = 0


Query: 2   ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENK 61
           E L + +++ + + E+ E+D+     ++D           +V+ D FK +I +IW+   +
Sbjct: 11  ERLSIVDED-EMVHEIAEEDIQDGAEDVDKCLVGRVLSGKKVNRDAFKGLIEQIWSPFGQ 70

Query: 62  VSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWI 121
           V +E VG N F+  F NK  + R+ +  PW + +++I+ E   G   +SK+ F     W+
Sbjct: 71  VEVELVGENTFMFYFINKEDRNRVWLRGPWHFGNSLIVLEKPEGSGNISKLGFNRADIWV 130

Query: 122 QLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLK 181
           Q+HD+   C      R L + +GE V   SE  ++  GK++ +KV ID+  PL + LKLK
Sbjct: 131 QIHDIPIMCMNRRTTRWLAEQIGEVVEIPSE-SRECWGKYIRVKVKIDITKPLKQWLKLK 190

Query: 182 SGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKC----SLVVIGEGRPLPFGEELR 223
            G       V L YE LS FC  CGR+GH   +C    +  +  EG P+ F   L+
Sbjct: 191 LGKFEEVTMVGLKYERLSEFCFTCGRIGHGNKECLDEEARKLALEGLPMKFRSWLK 244

[Close]

BLAST of Sed0024288 vs. ExPASy TrEMBL
Match: A0A5C7HZD3 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_009557 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-25
Identity = 82/255 (32.16%), Postives = 131/255 (51.37%), Query Frame = 0


Query: 32  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEA 91
           V+ + FK V+ RIW+I   V IEA+  N+F C F N   ++RI+   PW ++ A+I+FE 
Sbjct: 92  VNREAFKDVMKRIWHINGGVEIEAIKDNIFECHFTNLEARKRILSGGPWRFDRAIIIFEE 151

Query: 92  MSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFL 151
             G   +  M F    FW+Q+H+++  C +E     LG M+ E    D E  +   G+F+
Sbjct: 152 PMGTGDIDNMFFNKTKFWVQVHNLSLLCMSEEIGLFLGNMIREVRNIDLEAGKNGSGRFI 211

Query: 152 GLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGE 211
            ++V I V  PL ++L++      +   + L YE +  FC  C R+GH   +C+  V G+
Sbjct: 212 RVRVEIKVDEPLRRSLRVDLLGDGSITTMLLRYERVPDFCYKCNRLGHTLGECT--VPGD 271

Query: 212 GRPLPFGEELREPTIIFRGKGMVVNRFPGRGRGR-GRGRREDYQGGMEEVDERVVDRGGE 271
            + +     +R    + R      N F G+G GR  +GRR+  +GG      R V R  +
Sbjct: 272 NKEVTKEANIRLCNWM-RTTSPPKNHFYGKGNGRLQQGRRDWREGGYGFSGPRDVSRNQD 331

Query: 272 GAR-GGEIGQP-SGR 284
             R G ++ +P SGR
Sbjct: 332 NWRTGKKLSEPDSGR 343

The following BLAST results are available for this feature:

BLAST of Sed0024288 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG46581.1	1.2e-25	32.98	hypothetical protein EZV62_027919 [Acer yangbiense]	[more]
TXG48193.1	2.1e-25	29.85	hypothetical protein EZV62_027487 [Acer yangbiense]	[more]
TXG57799.1	3.5e-25	31.78	hypothetical protein EZV62_015628 [Acer yangbiense]	[more]
TXG53376.1	3.5e-25	32.96	hypothetical protein EZV62_022545 [Acer yangbiense]	[more]
TXG62563.1	6.0e-25	32.16	hypothetical protein EZV62_009557 [Acer yangbiense]	[more]

BLAST of Sed0024288 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0024288 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7GP26	5.8e-26	32.98	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02791...	[more]
A0A5C7GU64	9.9e-26	29.85	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02748...	[more]
A0A5C7HB59	1.7e-25	32.96	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022545 PE=4 SV=1	[more]
A0A5C7HLY4	1.7e-25	31.78	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01562...	[more]
A0A5C7HZD3	2.9e-25	32.16	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00955...	[more]

BLAST of Sed0024288 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 295..315
None	No IPR available	PANTHER	PTHR31286:SF84	SUBFAMILY NOT NAMED	coord: 51..206
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 157..205 e-value: 3.1E-10 score: 39.6
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 36..154 e-value: 4.6E-17 score: 61.9
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 51..206
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 191..204 score: 8.597819

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024288.1	Sed0024288.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding