Sed0024234 (gene) Chayote v1

Overview
NameSed0024234
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTrypsin inhibitor 1-like
LocationLG13: 2935489 .. 2935776 (-)
RNA-Seq ExpressionSed0024234
SyntenySed0024234
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAAGATTAAGATTGTTCTTGTGGCAGTAATGGCAATGATGCTGATTGCGACGTCGTTGGCCACATCCGTTATTGACGAGGACGACATGGTCGACCTCTACTCGGACGGTCGAGCTCAAGCGGGTCGAGGCATTACACTCCCAAGAAAGGTAATGAAAGAAAATGTTTATGAGGAAATGGGAGTGTTGTGTTTCTTAAGGTATTTGGATTGCAAACAAGACTCTGATTGCTCAGCTCCGTGTATTTGCCTTAAGAAAGGGATGTGTGGTTTGAAAGTTTAA

mRNA sequence

ATGGAGATGAAGATTAAGATTGTTCTTGTGGCAGTAATGGCAATGATGCTGATTGCGACGTCGTTGGCCACATCCGTTATTGACGAGGACGACATGGTCGACCTCTACTCGGACGGTCGAGCTCAAGCGGGTCGAGGCATTACACTCCCAAGAAAGGTAATGAAAGAAAATGTTTATGAGGAAATGGGAGTGTTGTGTTTCTTAAGGTATTTGGATTGCAAACAAGACTCTGATTGCTCAGCTCCGTGTATTTGCCTTAAGAAAGGGATGTGTGGTTTGAAAGTTTAA

Coding sequence (CDS)

ATGGAGATGAAGATTAAGATTGTTCTTGTGGCAGTAATGGCAATGATGCTGATTGCGACGTCGTTGGCCACATCCGTTATTGACGAGGACGACATGGTCGACCTCTACTCGGACGGTCGAGCTCAAGCGGGTCGAGGCATTACACTCCCAAGAAAGGTAATGAAAGAAAATGTTTATGAGGAAATGGGAGTGTTGTGTTTCTTAAGGTATTTGGATTGCAAACAAGACTCTGATTGCTCAGCTCCGTGTATTTGCCTTAAGAAAGGGATGTGTGGTTTGAAAGTTTAA

Protein sequence

MEMKIKIVLVAVMAMMLIATSLATSVIDEDDMVDLYSDGRAQAGRGITLPRKVMKENVYEEMGVLCFLRYLDCKQDSDCSAPCICLKKGMCGLKV
Homology
BLAST of Sed0024234 vs. NCBI nr
Match: KAG6576919.1 (hypothetical protein SDJN03_24493, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-07
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 5   IKIVLVAVMAMMLIATSLATSVIDEDDMVDLYSDGRAQAGRGITLPRKVMKENVYEEMGV 64
           +KIV VA++A++L+AT  + +   +DD +DL  DGR     G+  PRK+MK  V      
Sbjct: 57  MKIVAVALIAILLVATLSSAAYAIDDDSMDLVFDGR-DINHGV--PRKIMKWGVLNHEER 116

Query: 65  LCFLRYLDCKQDSDCSAPCICLKKGMCG 93
           +C    ++CK+DSDC A CICL+ G CG
Sbjct: 117 VCPKILMECKKDSDCLAECICLEHGYCG 141

BLAST of Sed0024234 vs. NCBI nr
Match: KAG7014944.1 (hypothetical protein SDJN02_22575, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-07
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 5   IKIVLVAVMAMMLIATSLATSVIDEDDMVDLYSDGRAQAGRGITLPRKVMKENVYEEMGV 64
           +KIV VA++A++L+AT  + +   +DD +DL  DGR     G+  PRK+MK  V      
Sbjct: 57  MKIVAVALIAILLVATLSSAAYAIDDDSMDLVFDGR-DINHGV--PRKIMKWGVLNHEER 116

Query: 65  LCFLRYLDCKQDSDCSAPCICLKKGMCG 93
           +C    ++CK+DSDC A CICL+ G CG
Sbjct: 117 VCPKILMECKKDSDCLAECICLEHGYCG 141

BLAST of Sed0024234 vs. NCBI nr
Match: KAA0044339.1 (trypsin inhibitor 1-like [Cucumis melo var. makuwa] >TYK29468.1 trypsin inhibitor 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 8.4e-07
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 0

Query: 6  KIVLVAVMAMMLIATSLATS---VIDEDDMVDLYSDGRAQAGRGITLPRKVM-KENVYEE 65
          KIV+VA++ M+++  ++++S   V+D+ D  +L SDGR         PRK+M K  V++E
Sbjct: 5  KIVVVAIVGMIIMLAAMSSSASFVVDDKDSTNLVSDGRDMNN---GCPRKIMIKGGVFKE 64

Query: 66 MGVLCFLRYLDCKQDSDCSAPCICLKKGMCG 93
             +C    + CKQDSDC   C+CLK+G CG
Sbjct: 65 EQRMCPKILMKCKQDSDCLLDCVCLKEGFCG 92

BLAST of Sed0024234 vs. ExPASy TrEMBL
Match: A0A5D3E148 (Trypsin inhibitor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00640 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 0

Query: 6  KIVLVAVMAMMLIATSLATS---VIDEDDMVDLYSDGRAQAGRGITLPRKVM-KENVYEE 65
          KIV+VA++ M+++  ++++S   V+D+ D  +L SDGR         PRK+M K  V++E
Sbjct: 5  KIVVVAIVGMIIMLAAMSSSASFVVDDKDSTNLVSDGRDMNN---GCPRKIMIKGGVFKE 64

Query: 66 MGVLCFLRYLDCKQDSDCSAPCICLKKGMCG 93
             +C    + CKQDSDC   C+CLK+G CG
Sbjct: 65 EQRMCPKILMKCKQDSDCLLDCVCLKEGFCG 92

BLAST of Sed0024234 vs. ExPASy TrEMBL
Match: A0A0A0KV23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000835 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.6e-06
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 1  MEMKIKIVLVAVMAMMLIATSLATS---VIDEDDMVDLYSDGRAQAGRGIT--LPRKVM- 60
          ME K KIV+VA++A +++  ++++S   V+D+ D + L SDGRAQA + +    PRK+M 
Sbjct: 1  MESK-KIVMVAIVATIIVQVAMSSSASFVVDDKDWIKLVSDGRAQADQDMNNGCPRKMMI 60

Query: 61 KENVYEEMGVLCFLRYLDCKQDSDCSAPCICLK 88
          K  V++E  ++C    + CK DSDC   C+CL+
Sbjct: 61 KGGVFKEEEMMCPRILMKCKHDSDCLPGCVCLE 92

BLAST of Sed0024234 vs. ExPASy TrEMBL
Match: A0A6J1E4H0 (probable polygalacturonase At3g15720 OS=Cucurbita moschata OX=3662 GN=LOC111430533 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.4e-04
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 5  IKIVLVAVMAMMLIATSLATSVIDEDDMVDLYSDGRAQAGRGITLPRKVMKENVYEEMGV 64
          +KIV VA++A++L+AT  + +   +DD +DL  DGR    R   +PRK+MK  V      
Sbjct: 4  MKIVAVALIAILLVATLSSAAYAIDDDSMDLVFDGRDINHR---VPRKIMKWGVLNHEER 63

Query: 65 LCFLRYLDCKQDSDCSAPCI 85
          +C    ++CK+DSDC A C+
Sbjct: 64 VCPKILMECKKDSDCLAECL 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6576919.12.9e-0743.18hypothetical protein SDJN03_24493, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014944.12.9e-0743.18hypothetical protein SDJN02_22575, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0044339.18.4e-0740.66trypsin inhibitor 1-like [Cucumis melo var. makuwa] >TYK29468.1 trypsin inhibito... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E1484.1e-0740.66Trypsin inhibitor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A0A0KV232.6e-0640.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000835 PE=3 SV=1[more]
A0A6J1E4H09.4e-0440.00probable polygalacturonase At3g15720 OS=Cucurbita moschata OX=3662 GN=LOC1114305... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00286PTI_1coord: 64..92
e-value: 7.1E-4
score: 28.9
NoneNo IPR availableGENE3D4.10.75.20coord: 50..92
e-value: 6.9E-6
score: 27.8
IPR000737Proteinase inhibitor I7, squashPFAMPF00299Squashcoord: 70..92
e-value: 8.4E-7
score: 28.9
IPR000737Proteinase inhibitor I7, squashCDDcd00150PlantTIcoord: 70..92
e-value: 1.99071E-5
score: 36.2015
IPR011052Proteinase/amylase inhibitor domain superfamilySUPERFAMILY57027Plant inhibitors of proteinases and amylasescoord: 65..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024234.1Sed0024234.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004867 serine-type endopeptidase inhibitor activity
molecular_function GO:0004866 endopeptidase inhibitor activity