Sed0024220 (gene) Chayote v1

Overview


Name	Sed0024220
Type	gene
Organism	Sechium edule (Chayote v1)
Description	pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like
Location	LG03: 1767724 .. 1769630 (-)
RNA-Seq Expression	Sed0024220
Synteny	Sed0024220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACATCCATGGCGTCTGCTTCGTTTTGGAGCTCATTTTCGCTCTCAGCTTCTCATTTCATCCAACTCCTCACATTTTCAGGTACTTTCCCATCCCAATCTGCAATCTTCACTGCTTCTTGAGCACCCTGTACACGCCACCGCCTCGCCGCCCATTTCCGATTCTCACTTCACCACCATCGCCAGACCTAGATCTCCAACCTCGTCCGAACCGGAACTTGGACTTAGAAACGGGTTACGCGCTTGTGTTAGATGTCTTCTATAAATCTCGAGATGCGGATGAAATTAGGAAACAATTAGAGTCGAATGGTATCGTTATTACTTATCATTTCGTGTTGGGAAACCTCGAGTCGAATCCCGATGTCGCTACCGGGTTTTTCAATTGGGTTTCGGGGGATTATGGTGAGAAACTTAGCTCCAAGTCGTATAACTTGATGTTGGGGATATTGGGTGTTAATGGCTTTGTTAAAGAGTTTTGGGATTTGAATTGGGATATGAAGAAAATGGGGTATGGGATATCTAAAACTGTACAGGTTAAGGTATTGGAGAAGTTTGAGAAGGATGGGTTGAAAAGTGAAGCTGAGAAGTTGAGGGACGTGTTTGCATCAGCGTCCATTGGCAAGTCTTCAGAGAAGATGGGTTCAATCGTTTGCAAACTTGTTAGGAGTAATGTGTGGGGACATGATGTTGTGCAGCAATTGCGTGATATGAATGTTTCGTTTTCGAGTGATATGGTTAAGATGATATTAGAAAATCTTTCCATAGAACCAGCTACAGCATTTATATTTTTCTGGTGGATCGTCCACAGTGGGATGTTTATGAGCGAACTTATAATGCCATGGCAAGGGTGTTAGGAAGAGAAGATTGTATAGATAGATTTTGGAAAGTAGTTGATGAAATGAGGAGCCAAGGCTACGAGATGGAGGTGGAGACGTTTGCCAAGGTGTTGGGACGATTTTGTAAACGAAGAATGAACGAGGAAGCTGTTAATTTGTACGTGTTTGCAATGGCAGGAAGCAATAAGCCTTCGGCCGATTGTCTTACTTTTTTGTTAAAGAAAATTGCAGTTAGTAAGCACTTAGATCTTAGCTTATTCACAAGGGCATTGAAGATATTTACAGAAACAGGCAATGCATTGACGGATTCGATGGTTTTTGCAGTTCTCAAGTCTCTGTCTACTGTTGGTAGGATTGGGGAGTACAATGAGGTTTTGAATGCAATGAAAGAGTATGGACATGAGTTTAGTGGTGGTTTGTAGAGAAAGGTAGCATATCGACTTAGTAGTACGGAAAAGGCGACGAAGCAAATGATTTCATGAACAGCTTAGAAGCTTCTGGCTGATATCCAGATAACAAGACCTGGGCTTCTCTGATCGAAGGGCATTGTGTTGCTGGAGATCTTGCTAAGGCTTCTGATTGCATCCACAAAATGGTTGTAAAAGAAGGTGACGGTTGTGTTGGATATGCTTTGGATTTAATAGTAAATGCTTACTTTCAAAAGAAACACGAAACTGATGCTAGTCGTCTTCTCTGTGAACTCGTCGATAAAATACAGCTAAAACCGCAACATTCTACGTATAAAACATTGATAAACAGGATATTGGTACGAGGGGAATTCAGTGAAGCTTTGAAACTGTTGGGGTTGATGAGAAATCATGAATTCCCACCATCAAAGTCTGGAACAGCTGATGATGCCATTGGTTTCATAAAGGCCGTGACATCGAAGAGCTTTCCTTCGACGTCGGTGTTTCTCCGTTTGTTTGAAGCATTTTTCCGAACTGGAAGGCATGGAAGGGCTCAAGACTTCCTTTCAAAATGTCCAGGTTACGTTCGAAACCATGTTTTGGATCTGTTTAATTCCATGAAACCTGTAGAAGCTGCTGTTCCCGCTAATCTGGCTTCTTAG

mRNA sequence

ATGAGACATCCATGGCGTCTGCTTCGTTTTGGAGCTCATTTTCGCTCTCAGCTTCTCATTTCATCCAACTCCTCACATTTTCAGGTACTTTCCCATCCCAATCTGCAATCTTCACTGCTTCTTGAGCACCCTGTACACGCCACCGCCTCGCCGCCCATTTCCGATTCTCACTTCACCACCATCGCCAGACCTAGATCTCCAACCTCGTCCGAACCGGAACTTGGACTTAGAAACGGGAAACAATTAGAGTCGAATGGTATCGTTATTACTTATCATTTCGTGTTGGGAAACCTCGAGTCGAATCCCGATGTCGCTACCGGGTTTTTCAATTGGGTTTCGGGGGATTATGGTGAGAAACTTAGCTCCAAGTCGTATAACTTGATGTTGGGGATATTGGGTGTTAATGGCTTTGTTAAAGAGTTTTGGGATTTGAATTGGGATATGAAGAAAATGGGGTATGGGATATCTAAAACTGTACAGGTTAAGGTATTGGAGAAGTTTGAGAAGGATGGGTTGAAAAGTGAAGCTGAGAAGTTGAGGGACGTGTTTGCATCAGCGTCCATTGGCAAGTCTTCAGAGAAGATGGGTTCAATCGTTTGCAAACTTGTTAGGAGTAATGTGTGGGGACATGATGTTGTGCAGCAATTGCGTGATATGAATGTTTCGTTTTCGAGTGATATGGTTAAGATGATATTAGAAAATCTTTCCATAGAACCAGCTACAGCATTTATATTTTTCTGGTGGATCGTCCACAGTGGGATGGTGTTAGGAAGAGAAGATTGTATAGATAGATTTTGGAAAGTAGTTGATGAAATGAGGAGCCAAGGCTACGAGATGGAGGTGGAGACGTTTGCCAAGGTGTTGGGACGATTTTGTAAACGAAGAATGAACGAGGAAGCTGTTAATTTGTACGTGTTTGCAATGGCAGGAAGCAATAAGCCTTCGGCCGATTGTCTTACTTTTTTGTTAAAGAAAATTGCAGTTAGTAAGCACTTAGATCTTAGCTTATTCACAAGGGCATTGAAGATATTTACAGAAACAGGCAATGCATTGACGGATTCGATGGTTTTTGCAGTTCTCAAGTCTCTGTCTACTGTTGGTAGGATTGGGGAGTACAATGAGGTTTTGAATGCAATGAAAGAGTATGGACATGAGTTTAGTGGTGATAACAAGACCTGGGCTTCTCTGATCGAAGGGCATTGTGTTGCTGGAGATCTTGCTAAGGCTTCTGATTGCATCCACAAAATGGTTGTAAAAGAAGGTGACGGTTGTGTTGGATATGCTTTGGATTTAATAGTAAATGCTTACTTTCAAAAGAAACACGAAACTGATGCTAGTCGTCTTCTCTGTGAACTCGTCGATAAAATACAGCTAAAACCGCAACATTCTACGTATAAAACATTGATAAACAGGATATTGGTACGAGGGGAATTCAGTGAAGCTTTGAAACTGTTGGGGTTGATGAGAAATCATGAATTCCCACCATCAAAGTCTGGAACAGCTGATGATGCCATTGGTTTCATAAAGGCCGTGACATCGAAGAGCTTTCCTTCGACGTCGGTGTTTCTCCGTTTGTTTGAAGCATTTTTCCGAACTGGAAGGCATGGAAGGGCTCAAGACTTCCTTTCAAAATGTCCAGGTTACGTTCGAAACCATGTTTTGGATCTGTTTAATTCCATGAAACCTGTAGAAGCTGCTGTTCCCGCTAATCTGGCTTCTTAG

Coding sequence (CDS)

ATGAGACATCCATGGCGTCTGCTTCGTTTTGGAGCTCATTTTCGCTCTCAGCTTCTCATTTCATCCAACTCCTCACATTTTCAGGTACTTTCCCATCCCAATCTGCAATCTTCACTGCTTCTTGAGCACCCTGTACACGCCACCGCCTCGCCGCCCATTTCCGATTCTCACTTCACCACCATCGCCAGACCTAGATCTCCAACCTCGTCCGAACCGGAACTTGGACTTAGAAACGGGAAACAATTAGAGTCGAATGGTATCGTTATTACTTATCATTTCGTGTTGGGAAACCTCGAGTCGAATCCCGATGTCGCTACCGGGTTTTTCAATTGGGTTTCGGGGGATTATGGTGAGAAACTTAGCTCCAAGTCGTATAACTTGATGTTGGGGATATTGGGTGTTAATGGCTTTGTTAAAGAGTTTTGGGATTTGAATTGGGATATGAAGAAAATGGGGTATGGGATATCTAAAACTGTACAGGTTAAGGTATTGGAGAAGTTTGAGAAGGATGGGTTGAAAAGTGAAGCTGAGAAGTTGAGGGACGTGTTTGCATCAGCGTCCATTGGCAAGTCTTCAGAGAAGATGGGTTCAATCGTTTGCAAACTTGTTAGGAGTAATGTGTGGGGACATGATGTTGTGCAGCAATTGCGTGATATGAATGTTTCGTTTTCGAGTGATATGGTTAAGATGATATTAGAAAATCTTTCCATAGAACCAGCTACAGCATTTATATTTTTCTGGTGGATCGTCCACAGTGGGATGGTGTTAGGAAGAGAAGATTGTATAGATAGATTTTGGAAAGTAGTTGATGAAATGAGGAGCCAAGGCTACGAGATGGAGGTGGAGACGTTTGCCAAGGTGTTGGGACGATTTTGTAAACGAAGAATGAACGAGGAAGCTGTTAATTTGTACGTGTTTGCAATGGCAGGAAGCAATAAGCCTTCGGCCGATTGTCTTACTTTTTTGTTAAAGAAAATTGCAGTTAGTAAGCACTTAGATCTTAGCTTATTCACAAGGGCATTGAAGATATTTACAGAAACAGGCAATGCATTGACGGATTCGATGGTTTTTGCAGTTCTCAAGTCTCTGTCTACTGTTGGTAGGATTGGGGAGTACAATGAGGTTTTGAATGCAATGAAAGAGTATGGACATGAGTTTAGTGGTGATAACAAGACCTGGGCTTCTCTGATCGAAGGGCATTGTGTTGCTGGAGATCTTGCTAAGGCTTCTGATTGCATCCACAAAATGGTTGTAAAAGAAGGTGACGGTTGTGTTGGATATGCTTTGGATTTAATAGTAAATGCTTACTTTCAAAAGAAACACGAAACTGATGCTAGTCGTCTTCTCTGTGAACTCGTCGATAAAATACAGCTAAAACCGCAACATTCTACGTATAAAACATTGATAAACAGGATATTGGTACGAGGGGAATTCAGTGAAGCTTTGAAACTGTTGGGGTTGATGAGAAATCATGAATTCCCACCATCAAAGTCTGGAACAGCTGATGATGCCATTGGTTTCATAAAGGCCGTGACATCGAAGAGCTTTCCTTCGACGTCGGTGTTTCTCCGTTTGTTTGAAGCATTTTTCCGAACTGGAAGGCATGGAAGGGCTCAAGACTTCCTTTCAAAATGTCCAGGTTACGTTCGAAACCATGTTTTGGATCTGTTTAATTCCATGAAACCTGTAGAAGCTGCTGTTCCCGCTAATCTGGCTTCTTAG

Protein sequence

MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQSSLLLEHPVHATASPPISDSHFTTIARPRSPTSSEPELGLRNGKQLESNGIVITYHFVLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMKKMGYGISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWGHDVVQQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGMVLGREDCIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSADCLTFLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMKEYGHEFSGDNKTWASLIEGHCVAGDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHSTYKTLINRILVRGEFSEALKLLGLMRNHEFPPSKSGTADDAIGFIKAVTSKSFPSTSVFLRLFEAFFRTGRHGRAQDFLSKCPGYVRNHVLDLFNSMKPVEAAVPANLAS

Homology

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BLAST of Sed0024220 vs. NCBI nr
Match: XP_022921370.1 (pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 836.6 bits (2160), Expect = 1.2e-238
Identity = 463/658 (70.36%), Postives = 503/658 (76.44%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQ-----SSLLLEHPVHATASPPISD 60
           MR+ WRLLR  AHFR QLL+SSNSSHFQVLS+PNLQ     SSLL ++PVH T+   I +
Sbjct: 1   MRYSWRLLRLRAHFRCQLLLSSNSSHFQVLSNPNLQSLRYFSSLLRKYPVHDTS---IVN 60

Query: 61  SHFTTIARPRSPTSSEPELGLRNG-------------------KQLESNGIVITYHF--- 120
           S ++T   PR   SSEPE+G ++                    K LES+G+VI++     
Sbjct: 61  SRYST---PRM-LSSEPEIGQKDSAHAVVFDIFSKCRDVDEIRKGLESSGVVISHDLVLE 120

Query: 121 VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMKKMGY 180
           VLG LESNPD A  FF WVSGDYGEKLSSKSYNLMLGILGVNG V+EFWDLN DMKK GY
Sbjct: 121 VLGKLESNPDEAIRFFGWVSGDYGEKLSSKSYNLMLGILGVNGRVEEFWDLNCDMKKKGY 180

Query: 181 GISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWGHDVV 240
           GISK+VQ KVLEKFEKDGL+SEAEKLRDVFAS SI KS EK+GSIVCKLVR NVWG DV 
Sbjct: 181 GISKSVQNKVLEKFEKDGLESEAEKLRDVFASGSIDKSPEKIGSIVCKLVRKNVWGDDVE 240

Query: 241 QQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-------------VLGRED 300
           QQLRDMN+S SSDMVKMILENL  EPA AFIFF WI  SGM             VLGRED
Sbjct: 241 QQLRDMNISLSSDMVKMILENLCTEPAKAFIFFRWIGESGMFKHDEQTYNAMARVLGRED 300

Query: 301 CIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSADCLT 360
            IDRFWKVVDEMRS GYEMEVETF++VL RFCKR+M EEAVNLYVFAMAG NKPS DCLT
Sbjct: 301 SIDRFWKVVDEMRSHGYEMEVETFSEVLRRFCKRKMIEEAVNLYVFAMAGGNKPSVDCLT 360

Query: 361 FLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK 420
           FLLKKIAVSKHLDLSLF+RALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK
Sbjct: 361 FLLKKIAVSKHLDLSLFSRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK 420

Query: 421 EYGHEFSG---------------------------------DNKTWASLIEGHCVAGDLA 480
           EYG+ FSG                                 DNKTWA+LIEG+CVAGDLA
Sbjct: 421 EYGYVFSGGLKRKVAYQLSSTGKSDEANDFVNSLEASGCNSDNKTWAALIEGYCVAGDLA 480

Query: 481 KASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHSTYKT 540
           KASDCIHKMV K  D C GY LDL+VNAY QKK ETDASRL C+LVD+ QLKP HSTYK 
Sbjct: 481 KASDCIHKMVEKGVDCCAGYTLDLVVNAYCQKKRETDASRLFCDLVDEKQLKPWHSTYKA 540

Query: 541 LINRILVRGEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAVTSKSFPS 574
           LIN++LVRGEF EALKLLG+MRNHEFPP         SKSGTADDAIGF+KA+TSKSFPS
Sbjct: 541 LINKLLVRGEFREALKLLGMMRNHEFPPFIDPFILYVSKSGTADDAIGFLKAMTSKSFPS 600

[Close]

BLAST of Sed0024220 vs. NCBI nr
Match: XP_022992918.1 (pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like [Cucurbita maxima] >XP_022992919.1 pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 832.4 bits (2149), Expect = 2.4e-237
Identity = 462/661 (69.89%), Postives = 490/661 (74.13%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQ-----SSLLLEHPVHATASPPISD 60
           MR+ WRLLR  AHFRSQL +SSN+SHFQV S PNLQ     SSLL +HPVH TASPPISD
Sbjct: 1   MRYSWRLLRLRAHFRSQLRVSSNASHFQVHSDPNLQTIRFLSSLLPKHPVHGTASPPISD 60

Query: 61  SHFTTIARPRSPT----SSEPELGLRNG-------------------KQLESNGIVITYH 120
           S FT+I + R  T    SSE  +  +                     K LE NGIVI++ 
Sbjct: 61  SQFTSIVKYRYGTPRTFSSESVIEQKESNHAVVFDIFSKSRDVDEIRKDLELNGIVISHD 120

Query: 121 F---VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMK 180
               VLG LESNPD A  FFNWVSG+YGEKLSSKSYNLMLGILGVN  VKEFWDLN DMK
Sbjct: 121 LVLEVLGKLESNPDSAIRFFNWVSGEYGEKLSSKSYNLMLGILGVNDHVKEFWDLNCDMK 180

Query: 181 KMGYGISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWG 240
           K GYGISKTV+ KVLEKFEKDGL+SEAEKLRDVFAS S  KS EK+GSIVCKLVR+NVWG
Sbjct: 181 KKGYGISKTVRDKVLEKFEKDGLESEAEKLRDVFASGSTDKSPEKIGSIVCKLVRNNVWG 240

Query: 241 HDVVQQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-------------VL 300
            DV QQLRDMNVSFSSDMVKMILENL  +PA AFIFF WI  SGM             VL
Sbjct: 241 DDVEQQLRDMNVSFSSDMVKMILENLCTDPAKAFIFFRWIEESGMFKHDEQTYNAMARVL 300

Query: 301 GREDCIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSA 360
           GREDCIDRFWKVVDEMRS GYEMEVETFAKVLGRFCKRRM EEAVNLYVFAMAG NKPS 
Sbjct: 301 GREDCIDRFWKVVDEMRSHGYEMEVETFAKVLGRFCKRRMIEEAVNLYVFAMAGGNKPSV 360

Query: 361 DCLTFLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVL 420
           DCLTFLLKKIAVSKHLDL LF+R LK+FTETGN LTDSMVFAVLKSLS VGRIGEY EVL
Sbjct: 361 DCLTFLLKKIAVSKHLDLDLFSRTLKVFTETGNVLTDSMVFAVLKSLSAVGRIGEYTEVL 420

Query: 421 NAMKEYGHEFSG---------------------------------DNKTWASLIEGHCVA 480
           N MKEYG+EFSG                                 DNKTWASLIEG C A
Sbjct: 421 NVMKEYGYEFSGSLKRKVAYRLSRTGKSDEANDFMNGLEASGCNPDNKTWASLIEGLCAA 480

Query: 481 GDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHS 540
           GDLA ASDCIHKMV K      GYALDLIVNAY QKK ETDAS LL ELVD  QLKP+HS
Sbjct: 481 GDLAMASDCIHKMVDKGDVSSAGYALDLIVNAYCQKKRETDASHLLSELVDGKQLKPRHS 540

Query: 541 TYKTLINRILVRGEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAVTSK 574
           TYK LIN++L RGEF EALKLLG+MRNHEFPP         SKSGTADDAIGF+KA+TSK
Sbjct: 541 TYKALINKLLQRGEFKEALKLLGMMRNHEFPPFIEPFISYVSKSGTADDAIGFLKAMTSK 600

[Close]

BLAST of Sed0024220 vs. NCBI nr
Match: KAG6602554.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 828.9 bits (2140), Expect = 2.6e-236
Identity = 462/658 (70.21%), Postives = 499/658 (75.84%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQ-----SSLLLEHPVHATASPPISD 60
           MR+ WRLLR  AHFR QLL+SSNSSHFQVLS+PNLQ     SSLL ++ VH T+   I +
Sbjct: 1   MRYSWRLLRLRAHFRCQLLLSSNSSHFQVLSNPNLQSLRYFSSLLHKYSVHGTS---IVN 60

Query: 61  SHFTTIARPRSPTSSEPELGLRNG-------------------KQLESNGIVITYHF--- 120
           S + T   PR   S EPE+G ++                    K LES+G+VI++     
Sbjct: 61  SRYRT---PRM-LSYEPEIGQKDSAHAVVFDIFSKCRDVDEIRKGLESSGVVISHDLVLE 120

Query: 121 VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMKKMGY 180
           VLG LESNPD A  FF WVSGDYGEKLSSKSYNLMLGILGVNG V+EFWDLN DMKK GY
Sbjct: 121 VLGKLESNPDEAIRFFGWVSGDYGEKLSSKSYNLMLGILGVNGRVEEFWDLNCDMKKKGY 180

Query: 181 GISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWGHDVV 240
           GISK+VQ KVLEKFEKDGL+SEAEKLRDVFAS SI KS EK+GSIVCKLVR NVWG DV 
Sbjct: 181 GISKSVQNKVLEKFEKDGLESEAEKLRDVFASGSIDKSPEKIGSIVCKLVRKNVWGDDVE 240

Query: 241 QQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-------------VLGRED 300
           QQLRDMNVSFSSDMVKMILENL  EPA AFIFF WI  SGM             VLG ED
Sbjct: 241 QQLRDMNVSFSSDMVKMILENLCTEPAKAFIFFRWIGESGMFKHDEQTYNAMARVLGSED 300

Query: 301 CIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSADCLT 360
            IDRFWKVVDEMRS GYEMEVETF++VL RFCKRRM EEAVNLYVFAMAG NKPS DCLT
Sbjct: 301 SIDRFWKVVDEMRSHGYEMEVETFSEVLRRFCKRRMIEEAVNLYVFAMAGGNKPSVDCLT 360

Query: 361 FLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK 420
           FLLKKIAVSKHLDLSLF+RALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK
Sbjct: 361 FLLKKIAVSKHLDLSLFSRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK 420

Query: 421 EYGHEFSG---------------------------------DNKTWASLIEGHCVAGDLA 480
           EYG+ FSG                                 DNKTWA+LIEG+CVAGDLA
Sbjct: 421 EYGYVFSGGLKRKVAYQLSSTGKSDEANDFVNSLEASGCNSDNKTWAALIEGYCVAGDLA 480

Query: 481 KASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHSTYKT 540
           KASDCIHKMV K  D C GY LDL+VNAY QKK ETDASRL C+LVD+ QLKP  STYK 
Sbjct: 481 KASDCIHKMVEKGVDCCAGYTLDLVVNAYCQKKRETDASRLFCDLVDEKQLKPWDSTYKA 540

Query: 541 LINRILVRGEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAVTSKSFPS 574
           LIN++LVRGEF EALKLLG+MRNHEFPP         SKSGTADDAIGF+KA+TSKSFPS
Sbjct: 541 LINKLLVRGEFREALKLLGMMRNHEFPPFIDPFILYVSKSGTADDAIGFLKAMTSKSFPS 600

[Close]

BLAST of Sed0024220 vs. NCBI nr
Match: XP_023511958.1 (pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 828.2 bits (2138), Expect = 4.4e-236
Identity = 461/658 (70.06%), Postives = 500/658 (75.99%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQ-----SSLLLEHPVHATASPPISD 60
           MR+ WRLLR  AHFR QLL+SSNSSHFQVLS+PNLQ     SSLL ++PVH T+   I +
Sbjct: 1   MRYSWRLLRLRAHFRCQLLLSSNSSHFQVLSNPNLQSLRYFSSLLHKYPVHDTS---IVN 60

Query: 61  SHFTTIARPRSPTSSEPELGLRNG-------------------KQLESNGIVITYHF--- 120
             + T   PR   S E E+G ++                    K LES+GIVI++     
Sbjct: 61  FRYRT---PRM-LSYESEIGQKDSAHAVLFDIFSKCRDVDEIRKGLESSGIVISHDLVLE 120

Query: 121 VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMKKMGY 180
           VLG LESNPD A  FF WVSGDYGEKLSSKSYNLMLGILGVNG V+EFWDLN DMKK GY
Sbjct: 121 VLGKLESNPDEAIRFFGWVSGDYGEKLSSKSYNLMLGILGVNGRVEEFWDLNCDMKKKGY 180

Query: 181 GISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWGHDVV 240
           GISK+VQ KVLEKFEKDGL+SEAEKLRDVFAS SI KS EK+GSIVCKLVR NVWG DV 
Sbjct: 181 GISKSVQDKVLEKFEKDGLESEAEKLRDVFASGSIDKSPEKIGSIVCKLVRKNVWGDDVE 240

Query: 241 QQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-------------VLGRED 300
           QQLRDMN+SFSSDMVKMILENL  EPA AFIFF WI  +GM             VLGRED
Sbjct: 241 QQLRDMNISFSSDMVKMILENLCTEPAKAFIFFRWIGENGMFKHDEQTYNAMARVLGRED 300

Query: 301 CIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSADCLT 360
            IDRFWKVVDEMRS GYE+EVETF++VL RFCKRRM EEAVNLYVFAMAG NKPS DCLT
Sbjct: 301 SIDRFWKVVDEMRSHGYEIEVETFSEVLRRFCKRRMIEEAVNLYVFAMAGGNKPSVDCLT 360

Query: 361 FLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK 420
           FLLKKIAVSKHLDLSLF+RALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK
Sbjct: 361 FLLKKIAVSKHLDLSLFSRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK 420

Query: 421 EYGHEFSG---------------------------------DNKTWASLIEGHCVAGDLA 480
           EYG+ FSG                                 DNKTWA+LIEG+CVAGDLA
Sbjct: 421 EYGYVFSGGLKRKVAYQLSSTGKSDEANDFVNSLEASGCNSDNKTWAALIEGYCVAGDLA 480

Query: 481 KASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHSTYKT 540
           KASDCIHKMV K  D C GY LDL+VNAY QKK ETDASRL C+LVD+ QLKP HSTYK 
Sbjct: 481 KASDCIHKMVEKGVDCCAGYTLDLVVNAYCQKKRETDASRLFCDLVDEKQLKPWHSTYKA 540

Query: 541 LINRILVRGEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAVTSKSFPS 574
           LIN++LVRGEF EALKLLG+MRNHEFPP         SKSGTADDAIGF+KA+TSKSFPS
Sbjct: 541 LINKLLVRGEFREALKLLGMMRNHEFPPFIDPFILYVSKSGTADDAIGFLKAMTSKSFPS 600

[Close]

BLAST of Sed0024220 vs. NCBI nr
Match: KAG7033234.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 827.4 bits (2136), Expect = 7.6e-236
Identity = 461/658 (70.06%), Postives = 499/658 (75.84%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQ-----SSLLLEHPVHATASPPISD 60
           MR+ WRLLR  AHFR QLL+SSNSSHFQVLS+PNLQ     SSLL ++ VH T+   I +
Sbjct: 1   MRYSWRLLRLRAHFRCQLLLSSNSSHFQVLSNPNLQSLRYFSSLLHKYSVHGTS---IVN 60

Query: 61  SHFTTIARPRSPTSSEPELGLRNG-------------------KQLESNGIVITYHF--- 120
           S + T   PR   S EPE+G ++                    K LES+G+VI++     
Sbjct: 61  SRYRT---PRM-LSYEPEIGQKDSAHAVVFDIFSKCRDVDEIRKGLESSGVVISHDLVLE 120

Query: 121 VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMKKMGY 180
           VLG LESNPD A  FF WVSGDYGEKLSSKSYNLMLGILGVNG V+EFWDLN DMKK GY
Sbjct: 121 VLGKLESNPDEAIRFFGWVSGDYGEKLSSKSYNLMLGILGVNGRVEEFWDLNCDMKKKGY 180

Query: 181 GISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWGHDVV 240
           GISK+VQ KVLEKFEKDGL+SEAEKLRDVFAS SI KS EK+GSIVCKLVR NVWG DV 
Sbjct: 181 GISKSVQNKVLEKFEKDGLESEAEKLRDVFASGSIDKSPEKIGSIVCKLVRKNVWGDDVE 240

Query: 241 QQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-------------VLGRED 300
           QQLRDMNVSFSSDMVKMILENL  EPA AFIFF WI  SGM             VLG ED
Sbjct: 241 QQLRDMNVSFSSDMVKMILENLCTEPAKAFIFFRWIGESGMFKHDEQTYNAMARVLGSED 300

Query: 301 CIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSADCLT 360
            I+RFWKVVDEMRS GYEMEVETF++VL RFCKRRM EEAVNLYVFAMAG NKPS DCLT
Sbjct: 301 SIERFWKVVDEMRSHGYEMEVETFSEVLRRFCKRRMIEEAVNLYVFAMAGGNKPSVDCLT 360

Query: 361 FLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK 420
           FLLKKIAVSKHLDLSLF+RALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK
Sbjct: 361 FLLKKIAVSKHLDLSLFSRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK 420

Query: 421 EYGHEFSG---------------------------------DNKTWASLIEGHCVAGDLA 480
           EYG+ FSG                                 DNKTWA+LIEG+CVAGDLA
Sbjct: 421 EYGYVFSGGLKRKVAYQLSSTGKSDEANDFVNSLEASGCNSDNKTWAALIEGYCVAGDLA 480

Query: 481 KASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHSTYKT 540
           KASDCIHKMV K  D C GY LDL+VNAY QKK ETDASRL C+LVD+ QLKP  STYK 
Sbjct: 481 KASDCIHKMVEKGVDCCAGYTLDLVVNAYCQKKRETDASRLFCDLVDEKQLKPWDSTYKA 540

Query: 541 LINRILVRGEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAVTSKSFPS 574
           LIN++LVRGEF EALKLLG+MRNHEFPP         SKSGTADDAIGF+KA+TSKSFPS
Sbjct: 541 LINKLLVRGEFREALKLLGMMRNHEFPPFIDPFILYVSKSGTADDAIGFLKAMTSKSFPS 600

[Close]

BLAST of Sed0024220 vs. ExPASy Swiss-Prot
Match: Q9M891 (Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g02490 PE=2 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 1.9e-128
Identity = 283/658 (43.01%), Postives = 379/658 (57.60%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQSSLLLEHP--------VHATASPP 60
           MR+ WR L F ++  S     S+ S FQV+S+     S  L           + A  SP 
Sbjct: 1   MRYQWRSLLFRSYRSSPRPFLSHHSRFQVISNSTRSFSSFLHERFGVQQRQCLFALRSPL 60

Query: 61  ISDSHFTTIARPRSPTSSEPE-----------LGLRNG-----KQLESNGIVITYHF--- 120
            S     +++R  S  S+  E               NG     K+L+SN +VI++     
Sbjct: 61  AS-----SVSRRFSSESAIEEKLPAETVVIDVFSRLNGKDEITKELDSNDVVISHELALR 120

Query: 121 VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMKKMGY 180
           VL  LES+PDVA  FF W    Y +KLSSKSYN ML I GVNG V EFW L  DMKK G+
Sbjct: 121 VLRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIFGVNGLVDEFWRLVDDMKKKGH 180

Query: 181 GISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWGHDVV 240
           G+S  V+ +V +KF+KDGL+++ E+L+++FAS S+  S +K+ + VCK+V   VWG DV 
Sbjct: 181 GVSANVRDRVGDKFKKDGLENDLERLKELFASGSMDNSVDKVCNRVCKIVMKEVWGADVE 240

Query: 241 QQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSG-------------MVLGRED 300
           +QLRD+ + F SD+VKM+LE L ++P  A +FF WI  SG              VLG+E 
Sbjct: 241 KQLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDESGSFKHDEKTYNAMARVLGKEK 300

Query: 301 CIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAG--SNKPSADC 360
            +DRF  +++E+RS GYEME+ET+ +V  RFC+ +M +EAV L+ FAMAG  SN P+  C
Sbjct: 301 FLDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIKEAVELFEFAMAGSISNTPTPHC 360

Query: 361 LTFLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNA 420
            + LLKKI  +K LD+ LFTR LK +T  GN + D M+  VLKSL +V R G+ NEVL A
Sbjct: 361 CSLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVMLQHVLKSLRSVDRFGQSNEVLKA 420

Query: 421 MKEYGHEFSG---------------------------------DNKTWASLIEGHCVAGD 480
           M E G+  SG                                 D+K  ASL+EGHC A D
Sbjct: 421 MNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASGNHLDDKAMASLVEGHCDAKD 480

Query: 481 LAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHSTY 540
           L +AS+C  KM+ KEG    GYA + +V AY       D  +L  ELV + QLKP HSTY
Sbjct: 481 LEEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQARDVYKLFSELVKQNQLKPWHSTY 540

Query: 541 KTLINRILVR-----GEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAV 568
           K ++  +L++     G F EAL LL +MRNH FPP         S SGT+ +A  F+KAV
Sbjct: 541 KIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPFMDYLSNSGTSAEAFAFLKAV 600

[Close]

BLAST of Sed0024220 vs. ExPASy Swiss-Prot
Match: Q8LPF1 (Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g15980 PE=2 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 4.0e-123
Identity = 252/562 (44.84%), Postives = 345/562 (61.39%), Query Frame = 0


Query: 80  KQLESNGIVITYHF---VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNG 139
           K+LES+G+VI+      VL  LESNPDVA  FF W+     E+LSSK+YN+ML ILG NG
Sbjct: 105 KELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEASPEELSSKNYNMMLRILGGNG 164

Query: 140 FVKEFWDLNWDMKKMGYGISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMG 199
            V EFW L   MKK G+G+S  V+ KV +KF+KDGL+S+  +LR +F S  +  S+E + 
Sbjct: 165 LVDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESDLLRLRKLFTSDCLDNSAENVC 224

Query: 200 SIVCKLVRSNVWGHDVVQQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-- 259
             VCK+V    WG DV +++RD+NV F SD+VKMI+E L +EP  A +FF WI  S +  
Sbjct: 225 DRVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDESDLFK 284

Query: 260 -----------VLGREDCIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNL 319
                      VLG+E  +DRF  +V EMRS GYE+E+ET+ +V  RFC+ ++ +EAV+L
Sbjct: 285 HDEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAVDL 344

Query: 320 YVFAMAG---SNKPSADCLTFLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVL 379
           +  AMAG   SN P+  C   LLKKI  +K LD+ LF+RA+K++T+ GNALTDS++ +VL
Sbjct: 345 FEIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTDSLLKSVL 404

Query: 380 KSLSTVGRIGEYNEVLNAMKEYGHEFSG-------------------------------- 439
           KSL +V R+ + NE+L  MK  G+  SG                                
Sbjct: 405 KSLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLSRKGKKDEADEFVDFMESSGNN 464

Query: 440 -DNKTWASLIEGHCVAGDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASR 499
            D+K  ASL+EG+C +G+L +A  C  KMV   G     Y+ + +V AY  K    DA +
Sbjct: 465 LDDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYADYSFEKLVLAYCNKNQVRDAYK 524

Query: 500 LLCELVDKIQLKPQHSTYKTLINRILVR-----GEFSEALKLLGLMRNHEFPP------- 559
           LL   V K QLKP+HSTYK+L+  +L +     G F EAL LL +M++H FPP       
Sbjct: 525 LLSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEALSLLPIMKDHGFPPFIDPFMS 584

Query: 560 --SKSGTADDAIGFIKAVTSKSFPSTSVFLRLFEAFFRTGRHGRAQDFLSKCPGYVRNH- 574
             S +G + +A+GF+KA+TS +FP  SV LR+FE   ++ RH  AQD LS CP Y+RN+ 
Sbjct: 585 YFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKSARHSEAQDLLSLCPNYIRNNP 644

[Close]

BLAST of Sed0024220 vs. ExPASy Swiss-Prot
Match: Q9STK5 (Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g48250 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.2e-58
Identity = 161/551 (29.22%), Postives = 257/551 (46.64%), Query Frame = 0


Query: 69  SSEPELGLRNGKQLESNGIVITYHFVLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLM 128
           S E E GLR      ++   I   +VL  LE  P+ A  F +WV  D G   S+  Y++M
Sbjct: 73  SKEVEEGLRKPDMSLTHETAI---YVLRKLEKYPEKAYYFLDWVLRDSGLSPSTPLYSIM 132

Query: 129 LGILGVNGFVKEFWDLNWDMKKMGYGISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASI 188
           L IL     +K FW    +MK+ G+ + +     +  +  K+  K++A  +   +     
Sbjct: 133 LRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADAVAVAHFYERMLK 192

Query: 189 GKSSEKMGSIVCKLVRSNVWGHDVVQQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWW 248
             +   +   V  +V    W  +V ++L++M +  S + V  +L+ L   P  A  FF W
Sbjct: 193 ENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVIRVLKELREHPLKALAFFHW 252

Query: 249 IVHSG----------------MVLGREDCIDRFWKVVDEMRSQGYEMEVETFAKVLGRFC 308
           +   G                 VL R + +  FW VVDEM++ GY+M+++T+ KV  +F 
Sbjct: 253 VGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYDMDLDTYIKVSRQFQ 312

Query: 309 KRRMNEEAVNLYVFAMAGSNKPSADCLTFLLKKIAVSKHLDLSLFTRALKIFTETGNALT 368
           K RM  E V LY + M G  KPS    + LL+ ++ S + DL L  R  + +  TG +L+
Sbjct: 313 KSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRKYESTGKSLS 372

Query: 369 DSMVFAVLKSLSTVGRIGEYNEVLNAMKEYGHEFSG------------------------ 428
            ++   + +SL++VGR  E  E+  AM+  G+E                           
Sbjct: 373 KAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLD 432

Query: 429 ---------DNKTWASLIEGHCVAGDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQK 488
                    D KTW  LI+GHC   +L KA  C   M+ K G       LD++++ +   
Sbjct: 433 QMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEK-GFDIDSNLLDVLIDGFVIH 492

Query: 489 KHETDASRLLCELVDKIQLKPQHSTYKTLINRILVRGEFSEALKLLGLMRNHEFPP---- 548
                AS  L E+V    +KP  STYK LI+++L   +  EAL LL +M+   +P     
Sbjct: 493 NKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQNYPAYAEA 552

Query: 549 -----SKSGTADDAIGFIKAVTSKSFPSTSVFLRLFEAFFRTGRHGRAQDFLSKCPGYVR 560
                +K GT +DA  F+  ++SK  PS + +  + EAF+R GR   A++ L  CP + +
Sbjct: 553 FDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLLFICPHHFK 612

[Close]

BLAST of Sed0024220 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-07
Identity = 67/300 (22.33%), Postives = 127/300 (42.33%), Query Frame = 0


Query: 262 IDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSADCLTF 321
           +D+ WK+++ M+ +G +     +  ++G  C+     EA   +   +     P     T 
Sbjct: 297 LDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT 356

Query: 322 LLKKIAVSKHLDLSLFTRALKIFTE--TGNALTDSMVF-AVLKSLSTVGRIGEYNEVLNA 381
           L+      K  D+     A K F E  + +   D + + A++     +G + E  ++ + 
Sbjct: 357 LID--GFCKRGDI---RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 416

Query: 382 MKEYGHEFSGDNKTWASLIEGHCVAGDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQ 441
           M   G E   D+ T+  LI G+C AG + K +  +H  +++ G          +++   +
Sbjct: 417 MFCKGLE--PDSVTFTELINGYCKAGHM-KDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 476

Query: 442 KKHETDASRLLCELVDKIQLKPQHSTYKTLINRILVRGEFSEALKLLGLMRNHEFPPSKS 501
           +     A+ LL E+  KI L+P   TY +++N +   G   EA+KL+G     EF     
Sbjct: 477 EGDLDSANELLHEMW-KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVG-----EF----- 536

Query: 502 GTADDAIGFIKAVTSKSFPSTSVFLRLFEAFFRTGRHGRAQDFLSKCPGYVRNHVLDLFN 559
               +A G            T  +  L +A+ ++G   +AQ+ L +  G      +  FN
Sbjct: 537 ----EAAGL--------NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 565

[Close]

BLAST of Sed0024220 vs. ExPASy Swiss-Prot
Match: Q9FMF6 (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.2e-07
Identity = 91/418 (21.77%), Postives = 165/418 (39.47%), Query Frame = 0


Query: 93  FVLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMKKMG 152
           + L  L  N   +   F+W     G + S   Y +++G LG NG  K    L   MK  G
Sbjct: 82  YKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEG 141

Query: 153 YGISKTVQVKVLEKFEKDGLKSEAEKL----RDVFASASIGKSSEKMGSIV----CKLVR 212
               +++ + ++  ++K G   +  +L    R+V++     KS   +  I+    C  V 
Sbjct: 142 IVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVA 201

Query: 213 SNVWGHDVVQQLRDMNVSFSSDMVKMILENLSIEPATAF-------------IFFWWIVH 272
           +NV+   + +++     +F   M      N  I+ A +              + +  ++H
Sbjct: 202 ANVFYDMLSRKIPPTLFTFGVVMKAFCAVN-EIDSALSLLRDMTKHGCVPNSVIYQTLIH 261

Query: 273 SGMVLGREDCIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGS 332
           S   L + + ++   ++++EM   G   + ETF  V+   CK     EA  +    +   
Sbjct: 262 S---LSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRG 321

Query: 333 NKPSADCLTFLLKKIAVSKHLDLS--LFTRALKIFTETGNALTDSMVFAVLKSLSTVGRI 392
             P      +L+  +     +D +  LF R  K      N L    V        T GR+
Sbjct: 322 FAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFV--------THGRL 381

Query: 393 GEYNEVLNAM-KEYGHEFSGDNKTWASLIEGHCVAGDLAKASDCIHKMVVKEGDGCVG-- 452
            +   VL+ M   YG     D  T+ SLI G+   G +  A + +H M      GC    
Sbjct: 382 DDAKAVLSDMVTSYG--IVPDVCTYNSLIYGYWKEGLVGLALEVLHDM---RNKGCKPNV 441

Query: 453 YALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHSTYKTLINRILVRGEFSEALKL 485
           Y+  ++V+ + +     +A  +L E+     LKP    +  LI+         EA+++
Sbjct: 442 YSYTILVDGFCKLGKIDEAYNVLNEM-SADGLKPNTVGFNCLISAFCKEHRIPEAVEI 481

[Close]

BLAST of Sed0024220 vs. ExPASy TrEMBL
Match: A0A6J1E5F8 (pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111429656 PE=4 SV=1)

HSP 1 Score: 836.6 bits (2160), Expect = 6.0e-239
Identity = 463/658 (70.36%), Postives = 503/658 (76.44%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQ-----SSLLLEHPVHATASPPISD 60
           MR+ WRLLR  AHFR QLL+SSNSSHFQVLS+PNLQ     SSLL ++PVH T+   I +
Sbjct: 1   MRYSWRLLRLRAHFRCQLLLSSNSSHFQVLSNPNLQSLRYFSSLLRKYPVHDTS---IVN 60

Query: 61  SHFTTIARPRSPTSSEPELGLRNG-------------------KQLESNGIVITYHF--- 120
           S ++T   PR   SSEPE+G ++                    K LES+G+VI++     
Sbjct: 61  SRYST---PRM-LSSEPEIGQKDSAHAVVFDIFSKCRDVDEIRKGLESSGVVISHDLVLE 120

Query: 121 VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMKKMGY 180
           VLG LESNPD A  FF WVSGDYGEKLSSKSYNLMLGILGVNG V+EFWDLN DMKK GY
Sbjct: 121 VLGKLESNPDEAIRFFGWVSGDYGEKLSSKSYNLMLGILGVNGRVEEFWDLNCDMKKKGY 180

Query: 181 GISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWGHDVV 240
           GISK+VQ KVLEKFEKDGL+SEAEKLRDVFAS SI KS EK+GSIVCKLVR NVWG DV 
Sbjct: 181 GISKSVQNKVLEKFEKDGLESEAEKLRDVFASGSIDKSPEKIGSIVCKLVRKNVWGDDVE 240

Query: 241 QQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-------------VLGRED 300
           QQLRDMN+S SSDMVKMILENL  EPA AFIFF WI  SGM             VLGRED
Sbjct: 241 QQLRDMNISLSSDMVKMILENLCTEPAKAFIFFRWIGESGMFKHDEQTYNAMARVLGRED 300

Query: 301 CIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSADCLT 360
            IDRFWKVVDEMRS GYEMEVETF++VL RFCKR+M EEAVNLYVFAMAG NKPS DCLT
Sbjct: 301 SIDRFWKVVDEMRSHGYEMEVETFSEVLRRFCKRKMIEEAVNLYVFAMAGGNKPSVDCLT 360

Query: 361 FLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK 420
           FLLKKIAVSKHLDLSLF+RALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK
Sbjct: 361 FLLKKIAVSKHLDLSLFSRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMK 420

Query: 421 EYGHEFSG---------------------------------DNKTWASLIEGHCVAGDLA 480
           EYG+ FSG                                 DNKTWA+LIEG+CVAGDLA
Sbjct: 421 EYGYVFSGGLKRKVAYQLSSTGKSDEANDFVNSLEASGCNSDNKTWAALIEGYCVAGDLA 480

Query: 481 KASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHSTYKT 540
           KASDCIHKMV K  D C GY LDL+VNAY QKK ETDASRL C+LVD+ QLKP HSTYK 
Sbjct: 481 KASDCIHKMVEKGVDCCAGYTLDLVVNAYCQKKRETDASRLFCDLVDEKQLKPWHSTYKA 540

Query: 541 LINRILVRGEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAVTSKSFPS 574
           LIN++LVRGEF EALKLLG+MRNHEFPP         SKSGTADDAIGF+KA+TSKSFPS
Sbjct: 541 LINKLLVRGEFREALKLLGMMRNHEFPPFIDPFILYVSKSGTADDAIGFLKAMTSKSFPS 600

[Close]

BLAST of Sed0024220 vs. ExPASy TrEMBL
Match: A0A6J1JYT4 (pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111489108 PE=4 SV=1)

HSP 1 Score: 832.4 bits (2149), Expect = 1.1e-237
Identity = 462/661 (69.89%), Postives = 490/661 (74.13%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQ-----SSLLLEHPVHATASPPISD 60
           MR+ WRLLR  AHFRSQL +SSN+SHFQV S PNLQ     SSLL +HPVH TASPPISD
Sbjct: 1   MRYSWRLLRLRAHFRSQLRVSSNASHFQVHSDPNLQTIRFLSSLLPKHPVHGTASPPISD 60

Query: 61  SHFTTIARPRSPT----SSEPELGLRNG-------------------KQLESNGIVITYH 120
           S FT+I + R  T    SSE  +  +                     K LE NGIVI++ 
Sbjct: 61  SQFTSIVKYRYGTPRTFSSESVIEQKESNHAVVFDIFSKSRDVDEIRKDLELNGIVISHD 120

Query: 121 F---VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMK 180
               VLG LESNPD A  FFNWVSG+YGEKLSSKSYNLMLGILGVN  VKEFWDLN DMK
Sbjct: 121 LVLEVLGKLESNPDSAIRFFNWVSGEYGEKLSSKSYNLMLGILGVNDHVKEFWDLNCDMK 180

Query: 181 KMGYGISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWG 240
           K GYGISKTV+ KVLEKFEKDGL+SEAEKLRDVFAS S  KS EK+GSIVCKLVR+NVWG
Sbjct: 181 KKGYGISKTVRDKVLEKFEKDGLESEAEKLRDVFASGSTDKSPEKIGSIVCKLVRNNVWG 240

Query: 241 HDVVQQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-------------VL 300
            DV QQLRDMNVSFSSDMVKMILENL  +PA AFIFF WI  SGM             VL
Sbjct: 241 DDVEQQLRDMNVSFSSDMVKMILENLCTDPAKAFIFFRWIEESGMFKHDEQTYNAMARVL 300

Query: 301 GREDCIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSA 360
           GREDCIDRFWKVVDEMRS GYEMEVETFAKVLGRFCKRRM EEAVNLYVFAMAG NKPS 
Sbjct: 301 GREDCIDRFWKVVDEMRSHGYEMEVETFAKVLGRFCKRRMIEEAVNLYVFAMAGGNKPSV 360

Query: 361 DCLTFLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVL 420
           DCLTFLLKKIAVSKHLDL LF+R LK+FTETGN LTDSMVFAVLKSLS VGRIGEY EVL
Sbjct: 361 DCLTFLLKKIAVSKHLDLDLFSRTLKVFTETGNVLTDSMVFAVLKSLSAVGRIGEYTEVL 420

Query: 421 NAMKEYGHEFSG---------------------------------DNKTWASLIEGHCVA 480
           N MKEYG+EFSG                                 DNKTWASLIEG C A
Sbjct: 421 NVMKEYGYEFSGSLKRKVAYRLSRTGKSDEANDFMNGLEASGCNPDNKTWASLIEGLCAA 480

Query: 481 GDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHS 540
           GDLA ASDCIHKMV K      GYALDLIVNAY QKK ETDAS LL ELVD  QLKP+HS
Sbjct: 481 GDLAMASDCIHKMVDKGDVSSAGYALDLIVNAYCQKKRETDASHLLSELVDGKQLKPRHS 540

Query: 541 TYKTLINRILVRGEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAVTSK 574
           TYK LIN++L RGEF EALKLLG+MRNHEFPP         SKSGTADDAIGF+KA+TSK
Sbjct: 541 TYKALINKLLQRGEFKEALKLLGMMRNHEFPPFIEPFISYVSKSGTADDAIGFLKAMTSK 600

[Close]

BLAST of Sed0024220 vs. ExPASy TrEMBL
Match: A0A6J1JSU2 (pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487528 PE=4 SV=1)

HSP 1 Score: 821.6 bits (2121), Expect = 2.0e-234
Identity = 456/657 (69.41%), Postives = 498/657 (75.80%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQS----SLLLEHPVHATASPPISDS 60
           MR+ W LL   AHFR QLL+SSNSSHFQVLS+PNL S    SLL ++PVH T+   I +S
Sbjct: 1   MRYSWSLLGLRAHFRCQLLLSSNSSHFQVLSNPNLPSLRYFSLLHKYPVHDTS---IVNS 60

Query: 61  HFTTIARPRSPTSSEPELGLRNG-------------------KQLESNGIVITYHF---V 120
            + T   PR   SSEPE+G ++                    K LES+G+VI++     V
Sbjct: 61  RYCT---PRM-LSSEPEIGQKDSAHAVVFDIFSKCRDVDEIRKGLESSGVVISHDLVLEV 120

Query: 121 LGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMKKMGYG 180
           LG LESNPD A  FF WVSGDYGEKLSSKSYNLMLGILGVNG V+EFWDLN D+KK GYG
Sbjct: 121 LGKLESNPDEAIRFFGWVSGDYGEKLSSKSYNLMLGILGVNGRVEEFWDLNCDIKKKGYG 180

Query: 181 ISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWGHDVVQ 240
           ISK+VQ KVLEKFEKDGL+SEAE+LRDVFAS SI KS EKMGS+VCKLVR NVWG+DV Q
Sbjct: 181 ISKSVQNKVLEKFEKDGLESEAERLRDVFASGSIDKSPEKMGSVVCKLVRKNVWGNDVEQ 240

Query: 241 QLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-------------VLGREDC 300
           QLRDMNVSFSSDMVKMILENL  EPA AFIFF WI  SGM             VLGRED 
Sbjct: 241 QLRDMNVSFSSDMVKMILENLCTEPAKAFIFFRWIGESGMFKHDEQTYNGMARVLGREDS 300

Query: 301 IDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSADCLTF 360
           IDRFWKVVDEMRS GYEMEVETF++VL RFC RRM EEAVNLYVFAMAG NKPS DCLTF
Sbjct: 301 IDRFWKVVDEMRSHGYEMEVETFSEVLRRFCARRMIEEAVNLYVFAMAGGNKPSVDCLTF 360

Query: 361 LLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMKE 420
           LLKKI VSKHLDLS+F+RALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMKE
Sbjct: 361 LLKKITVSKHLDLSMFSRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNAMKE 420

Query: 421 YGHEFSG---------------------------------DNKTWASLIEGHCVAGDLAK 480
           YG+ FSG                                 DNKTWA+LIEG+CVAGDLAK
Sbjct: 421 YGYVFSGGLKRKVAYQLSSTGKSDEANDFVNSLEASGCNSDNKTWAALIEGYCVAGDLAK 480

Query: 481 ASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHSTYKTL 540
           ASDCIHKM  K  D C GYALDL+VNAY QKK ETD SRLLC+LVD+ QLKP HSTYK L
Sbjct: 481 ASDCIHKMFEKGVDCCAGYALDLVVNAYCQKKRETDGSRLLCDLVDEKQLKPWHSTYKEL 540

Query: 541 INRILVRGEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAVTSKSFPST 574
           IN++LVRGEF EALKLLG+MRNHEFPP         SKSGTADDAIGF+KA+TSKSFPST
Sbjct: 541 INKLLVRGEFREALKLLGMMRNHEFPPFIDPFILYVSKSGTADDAIGFLKAMTSKSFPST 600

[Close]

BLAST of Sed0024220 vs. ExPASy TrEMBL
Match: A0A6J1FJW5 (pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111444701 PE=4 SV=1)

HSP 1 Score: 820.1 bits (2117), Expect = 5.9e-234
Identity = 458/661 (69.29%), Postives = 486/661 (73.52%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQ-----SSLLLEHPVHATASPPISD 60
           MR+ WRLLR  AHFRSQL ISSN+SHFQV S PNLQ     SSLL +HPVH TASPPISD
Sbjct: 1   MRYSWRLLRLRAHFRSQLRISSNASHFQVHSDPNLQSLRFLSSLLPKHPVHGTASPPISD 60

Query: 61  SHFTTIARPRSPT----SSEPELGLRNG-------------------KQLESNGIVITYH 120
           S  T+I + R  T    SSE  +  +                     K LESNGIVI++ 
Sbjct: 61  SQCTSIVKSRYGTPRTFSSESVIEQKESDHAVVFDIFSKSRDVDEIRKDLESNGIVISHD 120

Query: 121 F---VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMK 180
               VLG LESNPD A  FFNWVSGDYGEKLSSKSYNLMLGILGVN  V EFWDLN DMK
Sbjct: 121 LVLEVLGKLESNPDSAIRFFNWVSGDYGEKLSSKSYNLMLGILGVNDHVGEFWDLNCDMK 180

Query: 181 KMGYGISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWG 240
           K GYGISKTV+ KVLEKFEKDGL+SEAEKLRDVFAS S  KS EK+GSIVCKLVR+NVWG
Sbjct: 181 KKGYGISKTVRDKVLEKFEKDGLESEAEKLRDVFASGSTDKSPEKIGSIVCKLVRNNVWG 240

Query: 241 HDVVQQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-------------VL 300
            DV QQL DMNVSFSSDMVKMILENL  +PA AFIFF WI  SGM             VL
Sbjct: 241 DDVEQQLCDMNVSFSSDMVKMILENLCTDPAKAFIFFRWIGESGMFKHDEQTYNAMARVL 300

Query: 301 GREDCIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSA 360
           GREDCIDRFWKVVDEMRS GYEM VETFAKVLGRFCKRRM EEAVNLYVFAMAG NKPS 
Sbjct: 301 GREDCIDRFWKVVDEMRSHGYEMGVETFAKVLGRFCKRRMIEEAVNLYVFAMAGGNKPSV 360

Query: 361 DCLTFLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVL 420
           DCLTFLLKKIAVSKHLDL LF+R LK+FTETGN LTDSMV AVLKSLSTVGRIGEY EVL
Sbjct: 361 DCLTFLLKKIAVSKHLDLDLFSRTLKVFTETGNVLTDSMVSAVLKSLSTVGRIGEYTEVL 420

Query: 421 NAMKEYGHEFSG---------------------------------DNKTWASLIEGHCVA 480
           N MKEYG+EFSG                                 DNKTWASLIEG C A
Sbjct: 421 NVMKEYGYEFSGSLKRKVAYRLSRTGKSDEANDFMNGLEASGCNPDNKTWASLIEGLCAA 480

Query: 481 GDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHS 540
           GDLA ASDCIHKMV K      GYALDLI+NAY QK+ ETDAS LL +LVD  QLKP HS
Sbjct: 481 GDLAMASDCIHKMVEKGDVSNAGYALDLIINAYCQKRRETDASHLLSDLVDGKQLKPWHS 540

Query: 541 TYKTLINRILVRGEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAVTSK 574
           TYK LIN++L RGEF EALKLLG+MRNHEFPP         SKSGTADDAIGF+KA+TSK
Sbjct: 541 TYKALINKLLQRGEFKEALKLLGMMRNHEFPPFIEPFISYVSKSGTADDAIGFLKAMTSK 600

[Close]

BLAST of Sed0024220 vs. ExPASy TrEMBL
Match: A0A6J1BYW6 (pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111006500 PE=4 SV=1)

HSP 1 Score: 816.2 bits (2107), Expect = 8.5e-233
Identity = 448/662 (67.67%), Postives = 486/662 (73.41%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQ-----SSLLLEHPVHATASPPISD 60
           MR+ WRLLR  +H RSQL ISSNSSHFQVLS PNLQ     SSLL  +P H + SPPISD
Sbjct: 1   MRYSWRLLRLRSHLRSQLRISSNSSHFQVLSDPNLQSLRSLSSLLHSNPAHGSVSPPISD 60

Query: 61  SHFTTIARP----RSPTSSEPELGLRNG-------------------KQLESNGIVITYH 120
           SHFT   +P        SSEP +  +                     K LES+ IV+++ 
Sbjct: 61  SHFTNFVKPGYGLARTFSSEPAIEQKESDHAVVSDIFSKSRDADEIRKDLESSSIVVSHD 120

Query: 121 F---VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMK 180
               VLG LESNPDVA  FF+WVSG+YGEKLSSKSYNLMLG+LGVNGFVKEFWDLN DMK
Sbjct: 121 LVLEVLGKLESNPDVAVRFFDWVSGNYGEKLSSKSYNLMLGMLGVNGFVKEFWDLNCDMK 180

Query: 181 KMGYGISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWG 240
           K GYGISK V+ KVLEKFE+DG  SEAEKLRDVFAS SI KS EK+GSIVCKL+R+ VWG
Sbjct: 181 KKGYGISKGVRDKVLEKFEEDGFGSEAEKLRDVFASGSIDKSPEKIGSIVCKLIRNKVWG 240

Query: 241 HDVVQQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-------------VL 300
            DV QQLRDM+V FS DMVKMILENL  EPA AFIFF WI  SGM             VL
Sbjct: 241 DDVEQQLRDMSVPFSGDMVKMILENLCTEPAKAFIFFCWIGESGMFKHDEQTYNAMARVL 300

Query: 301 GREDCIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSA 360
           GRED IDRFWKVVDEMRS GYEMEVETFAKVLGRFCKRRM EEAVNLY FAMAGSNKPS 
Sbjct: 301 GREDSIDRFWKVVDEMRSHGYEMEVETFAKVLGRFCKRRMIEEAVNLYEFAMAGSNKPSV 360

Query: 361 DCLTFLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVL 420
           DCLTFLLKKIAVSKHLDLSLF+R LK+FTE GNA+TD MVFAVLKSLSTVGRIGEYN+VL
Sbjct: 361 DCLTFLLKKIAVSKHLDLSLFSRTLKVFTEAGNAVTDPMVFAVLKSLSTVGRIGEYNQVL 420

Query: 421 NAMKEYGHEFSG---------------------------------DNKTWASLIEGHCVA 480
           NAMKEYG+ FS                                  DNKTW S++EGHCVA
Sbjct: 421 NAMKEYGYVFSDGLKTKVAYQLSSNGKSDEANDFMDNIEASGCDPDNKTWVSMVEGHCVA 480

Query: 481 GDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHS 540
           GDL KASDCIHKMV KEG    GYALDLIVNAY QKK ETDASRLLC+LVD  QLKP HS
Sbjct: 481 GDLGKASDCIHKMVEKEGVSSAGYALDLIVNAYSQKKRETDASRLLCDLVDGKQLKPWHS 540

Query: 541 TYKTLINRILVRGEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAVTSK 574
           TYK+LIN++LVRG F EALK+L  MRNHEFPP         SKSGT DD IGF+KA+TSK
Sbjct: 541 TYKSLINKLLVRGAFKEALKMLESMRNHEFPPFIDPFIAYVSKSGTIDDTIGFLKAMTSK 600

[Close]

BLAST of Sed0024220 vs. TAIR 10
Match: AT3G02490.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 461.1 bits (1185), Expect = 1.3e-129
Identity = 283/658 (43.01%), Postives = 379/658 (57.60%), Query Frame = 0


Query: 1   MRHPWRLLRFGAHFRSQLLISSNSSHFQVLSHPNLQSSLLLEHP--------VHATASPP 60
           MR+ WR L F ++  S     S+ S FQV+S+     S  L           + A  SP 
Sbjct: 1   MRYQWRSLLFRSYRSSPRPFLSHHSRFQVISNSTRSFSSFLHERFGVQQRQCLFALRSPL 60

Query: 61  ISDSHFTTIARPRSPTSSEPE-----------LGLRNG-----KQLESNGIVITYHF--- 120
            S     +++R  S  S+  E               NG     K+L+SN +VI++     
Sbjct: 61  AS-----SVSRRFSSESAIEEKLPAETVVIDVFSRLNGKDEITKELDSNDVVISHELALR 120

Query: 121 VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNGFVKEFWDLNWDMKKMGY 180
           VL  LES+PDVA  FF W    Y +KLSSKSYN ML I GVNG V EFW L  DMKK G+
Sbjct: 121 VLRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIFGVNGLVDEFWRLVDDMKKKGH 180

Query: 181 GISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMGSIVCKLVRSNVWGHDVV 240
           G+S  V+ +V +KF+KDGL+++ E+L+++FAS S+  S +K+ + VCK+V   VWG DV 
Sbjct: 181 GVSANVRDRVGDKFKKDGLENDLERLKELFASGSMDNSVDKVCNRVCKIVMKEVWGADVE 240

Query: 241 QQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSG-------------MVLGRED 300
           +QLRD+ + F SD+VKM+LE L ++P  A +FF WI  SG              VLG+E 
Sbjct: 241 KQLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDESGSFKHDEKTYNAMARVLGKEK 300

Query: 301 CIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAG--SNKPSADC 360
            +DRF  +++E+RS GYEME+ET+ +V  RFC+ +M +EAV L+ FAMAG  SN P+  C
Sbjct: 301 FLDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIKEAVELFEFAMAGSISNTPTPHC 360

Query: 361 LTFLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVLKSLSTVGRIGEYNEVLNA 420
            + LLKKI  +K LD+ LFTR LK +T  GN + D M+  VLKSL +V R G+ NEVL A
Sbjct: 361 CSLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVMLQHVLKSLRSVDRFGQSNEVLKA 420

Query: 421 MKEYGHEFSG---------------------------------DNKTWASLIEGHCVAGD 480
           M E G+  SG                                 D+K  ASL+EGHC A D
Sbjct: 421 MNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASGNHLDDKAMASLVEGHCDAKD 480

Query: 481 LAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASRLLCELVDKIQLKPQHSTY 540
           L +AS+C  KM+ KEG    GYA + +V AY       D  +L  ELV + QLKP HSTY
Sbjct: 481 LEEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQARDVYKLFSELVKQNQLKPWHSTY 540

Query: 541 KTLINRILVR-----GEFSEALKLLGLMRNHEFPP---------SKSGTADDAIGFIKAV 568
           K ++  +L++     G F EAL LL +MRNH FPP         S SGT+ +A  F+KAV
Sbjct: 541 KIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPFMDYLSNSGTSAEAFAFLKAV 600

[Close]

BLAST of Sed0024220 vs. TAIR 10
Match: AT5G15980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 443.4 bits (1139), Expect = 2.9e-124
Identity = 252/562 (44.84%), Postives = 345/562 (61.39%), Query Frame = 0


Query: 80  KQLESNGIVITYHF---VLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLMLGILGVNG 139
           K+LES+G+VI+      VL  LESNPDVA  FF W+     E+LSSK+YN+ML ILG NG
Sbjct: 105 KELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEASPEELSSKNYNMMLRILGGNG 164

Query: 140 FVKEFWDLNWDMKKMGYGISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASIGKSSEKMG 199
            V EFW L   MKK G+G+S  V+ KV +KF+KDGL+S+  +LR +F S  +  S+E + 
Sbjct: 165 LVDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESDLLRLRKLFTSDCLDNSAENVC 224

Query: 200 SIVCKLVRSNVWGHDVVQQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWWIVHSGM-- 259
             VCK+V    WG DV +++RD+NV F SD+VKMI+E L +EP  A +FF WI  S +  
Sbjct: 225 DRVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDESDLFK 284

Query: 260 -----------VLGREDCIDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNL 319
                      VLG+E  +DRF  +V EMRS GYE+E+ET+ +V  RFC+ ++ +EAV+L
Sbjct: 285 HDEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAVDL 344

Query: 320 YVFAMAG---SNKPSADCLTFLLKKIAVSKHLDLSLFTRALKIFTETGNALTDSMVFAVL 379
           +  AMAG   SN P+  C   LLKKI  +K LD+ LF+RA+K++T+ GNALTDS++ +VL
Sbjct: 345 FEIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTDSLLKSVL 404

Query: 380 KSLSTVGRIGEYNEVLNAMKEYGHEFSG-------------------------------- 439
           KSL +V R+ + NE+L  MK  G+  SG                                
Sbjct: 405 KSLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLSRKGKKDEADEFVDFMESSGNN 464

Query: 440 -DNKTWASLIEGHCVAGDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQKKHETDASR 499
            D+K  ASL+EG+C +G+L +A  C  KMV   G     Y+ + +V AY  K    DA +
Sbjct: 465 LDDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYADYSFEKLVLAYCNKNQVRDAYK 524

Query: 500 LLCELVDKIQLKPQHSTYKTLINRILVR-----GEFSEALKLLGLMRNHEFPP------- 559
           LL   V K QLKP+HSTYK+L+  +L +     G F EAL LL +M++H FPP       
Sbjct: 525 LLSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEALSLLPIMKDHGFPPFIDPFMS 584

Query: 560 --SKSGTADDAIGFIKAVTSKSFPSTSVFLRLFEAFFRTGRHGRAQDFLSKCPGYVRNH- 574
             S +G + +A+GF+KA+TS +FP  SV LR+FE   ++ RH  AQD LS CP Y+RN+ 
Sbjct: 585 YFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKSARHSEAQDLLSLCPNYIRNNP 644

[Close]

BLAST of Sed0024220 vs. TAIR 10
Match: AT3G48250.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 229.2 bits (583), Expect = 8.5e-60
Identity = 161/551 (29.22%), Postives = 257/551 (46.64%), Query Frame = 0


Query: 69  SSEPELGLRNGKQLESNGIVITYHFVLGNLESNPDVATGFFNWVSGDYGEKLSSKSYNLM 128
           S E E GLR      ++   I   +VL  LE  P+ A  F +WV  D G   S+  Y++M
Sbjct: 73  SKEVEEGLRKPDMSLTHETAI---YVLRKLEKYPEKAYYFLDWVLRDSGLSPSTPLYSIM 132

Query: 129 LGILGVNGFVKEFWDLNWDMKKMGYGISKTVQVKVLEKFEKDGLKSEAEKLRDVFASASI 188
           L IL     +K FW    +MK+ G+ + +     +  +  K+  K++A  +   +     
Sbjct: 133 LRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADAVAVAHFYERMLK 192

Query: 189 GKSSEKMGSIVCKLVRSNVWGHDVVQQLRDMNVSFSSDMVKMILENLSIEPATAFIFFWW 248
             +   +   V  +V    W  +V ++L++M +  S + V  +L+ L   P  A  FF W
Sbjct: 193 ENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVIRVLKELREHPLKALAFFHW 252

Query: 249 IVHSG----------------MVLGREDCIDRFWKVVDEMRSQGYEMEVETFAKVLGRFC 308
           +   G                 VL R + +  FW VVDEM++ GY+M+++T+ KV  +F 
Sbjct: 253 VGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYDMDLDTYIKVSRQFQ 312

Query: 309 KRRMNEEAVNLYVFAMAGSNKPSADCLTFLLKKIAVSKHLDLSLFTRALKIFTETGNALT 368
           K RM  E V LY + M G  KPS    + LL+ ++ S + DL L  R  + +  TG +L+
Sbjct: 313 KSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRKYESTGKSLS 372

Query: 369 DSMVFAVLKSLSTVGRIGEYNEVLNAMKEYGHEFSG------------------------ 428
            ++   + +SL++VGR  E  E+  AM+  G+E                           
Sbjct: 373 KAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLD 432

Query: 429 ---------DNKTWASLIEGHCVAGDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQK 488
                    D KTW  LI+GHC   +L KA  C   M+ K G       LD++++ +   
Sbjct: 433 QMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEK-GFDIDSNLLDVLIDGFVIH 492

Query: 489 KHETDASRLLCELVDKIQLKPQHSTYKTLINRILVRGEFSEALKLLGLMRNHEFPP---- 548
                AS  L E+V    +KP  STYK LI+++L   +  EAL LL +M+   +P     
Sbjct: 493 NKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQNYPAYAEA 552

Query: 549 -----SKSGTADDAIGFIKAVTSKSFPSTSVFLRLFEAFFRTGRHGRAQDFLSKCPGYVR 560
                +K GT +DA  F+  ++SK  PS + +  + EAF+R GR   A++ L  CP + +
Sbjct: 553 FDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLLFICPHHFK 612

[Close]

BLAST of Sed0024220 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-08
Identity = 67/300 (22.33%), Postives = 127/300 (42.33%), Query Frame = 0


Query: 262 IDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSADCLTF 321
           +D+ WK+++ M+ +G +     +  ++G  C+     EA   +   +     P     T 
Sbjct: 297 LDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT 356

Query: 322 LLKKIAVSKHLDLSLFTRALKIFTE--TGNALTDSMVF-AVLKSLSTVGRIGEYNEVLNA 381
           L+      K  D+     A K F E  + +   D + + A++     +G + E  ++ + 
Sbjct: 357 LID--GFCKRGDI---RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 416

Query: 382 MKEYGHEFSGDNKTWASLIEGHCVAGDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQ 441
           M   G E   D+ T+  LI G+C AG + K +  +H  +++ G          +++   +
Sbjct: 417 MFCKGLE--PDSVTFTELINGYCKAGHM-KDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 476

Query: 442 KKHETDASRLLCELVDKIQLKPQHSTYKTLINRILVRGEFSEALKLLGLMRNHEFPPSKS 501
           +     A+ LL E+  KI L+P   TY +++N +   G   EA+KL+G     EF     
Sbjct: 477 EGDLDSANELLHEMW-KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVG-----EF----- 536

Query: 502 GTADDAIGFIKAVTSKSFPSTSVFLRLFEAFFRTGRHGRAQDFLSKCPGYVRNHVLDLFN 559
               +A G            T  +  L +A+ ++G   +AQ+ L +  G      +  FN
Sbjct: 537 ----EAAGL--------NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 565

[Close]

BLAST of Sed0024220 vs. TAIR 10
Match: AT1G05670.2 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-08
Identity = 67/300 (22.33%), Postives = 127/300 (42.33%), Query Frame = 0


Query: 262 IDRFWKVVDEMRSQGYEMEVETFAKVLGRFCKRRMNEEAVNLYVFAMAGSNKPSADCLTF 321
           +D+ WK+++ M+ +G +     +  ++G  C+     EA   +   +     P     T 
Sbjct: 297 LDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT 356

Query: 322 LLKKIAVSKHLDLSLFTRALKIFTE--TGNALTDSMVF-AVLKSLSTVGRIGEYNEVLNA 381
           L+      K  D+     A K F E  + +   D + + A++     +G + E  ++ + 
Sbjct: 357 LID--GFCKRGDI---RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 416

Query: 382 MKEYGHEFSGDNKTWASLIEGHCVAGDLAKASDCIHKMVVKEGDGCVGYALDLIVNAYFQ 441
           M   G E   D+ T+  LI G+C AG + K +  +H  +++ G          +++   +
Sbjct: 417 MFCKGLE--PDSVTFTELINGYCKAGHM-KDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 476

Query: 442 KKHETDASRLLCELVDKIQLKPQHSTYKTLINRILVRGEFSEALKLLGLMRNHEFPPSKS 501
           +     A+ LL E+  KI L+P   TY +++N +   G   EA+KL+G     EF     
Sbjct: 477 EGDLDSANELLHEMW-KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVG-----EF----- 536

Query: 502 GTADDAIGFIKAVTSKSFPSTSVFLRLFEAFFRTGRHGRAQDFLSKCPGYVRNHVLDLFN 559
               +A G            T  +  L +A+ ++G   +AQ+ L +  G      +  FN
Sbjct: 537 ----EAAGL--------NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 565

The following BLAST results are available for this feature:

BLAST of Sed0024220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921370.1	1.2e-238	70.36	pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like isofor...	[more]
XP_022992918.1	2.4e-237	69.89	pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like [Cucur...	[more]
KAG6602554.1	2.6e-236	70.21	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_023511958.1	4.4e-236	70.06	pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like [Cucur...	[more]
KAG7033234.1	7.6e-236	70.06	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of Sed0024220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M891	1.9e-128	43.01	Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidop...	[more]
Q8LPF1	4.0e-123	44.84	Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidop...	[more]
Q9STK5	1.2e-58	29.22	Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidop...	[more]
Q0WVK7	2.1e-07	22.33	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]
Q9FMF6	6.2e-07	21.77	Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop...	[more]

BLAST of Sed0024220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5F8	6.0e-239	70.36	pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like isofor...	[more]
A0A6J1JYT4	1.1e-237	69.89	pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like OS=Cuc...	[more]
A0A6J1JSU2	2.0e-234	69.41	pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like isofor...	[more]
A0A6J1FJW5	5.9e-234	69.29	pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like OS=Cuc...	[more]
A0A6J1BYW6	8.5e-233	67.67	pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Momordic...	[more]

BLAST of Sed0024220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02490.1	1.3e-129	43.01	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G15980.1	2.9e-124	44.84	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G48250.1	8.5e-60	29.22	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G05670.1	1.5e-08	22.33	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05670.2	1.5e-08	22.33	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 463..491 e-value: 0.16 score: 12.3 coord: 392..418 e-value: 0.016 score: 15.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 464..496 e-value: 0.0027 score: 15.8 coord: 392..418 e-value: 0.0015 score: 16.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 461..495 score: 8.878711
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 429..566 e-value: 1.9E-6 score: 29.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 331..428 e-value: 5.5E-7 score: 31.1 coord: 164..330 e-value: 9.4E-6 score: 27.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..77
None	No IPR available	PANTHER	PTHR47003:SF3	BNAC09G41880D PROTEIN	coord: 387..567 coord: 26..384
IPR044578	Pentatricopeptide repeat-containing protein BIR6-like	PANTHER	PTHR47003	OS01G0970900 PROTEIN	coord: 387..567 coord: 26..384

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024220.1	Sed0024220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
molecular_function	GO:0005515	protein binding