Sed0024214 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTTTTTTCCACTCATCAAATTATTCCACTTTAAATACAAAACAAAGCCAAAAGCAATATGAAAGGAATAAGTTCTTATGAAAAGAAGTAACATAGAAATTAGAATAACCCATATATAAATGCTCCTCTCTTGTATAAAGCCACATTGCTCATAATTATTTGGTTCGTTACATTTTCATATCATATTTTTCAATGTCAAGTCCGATCCTTGCACAAGATTGGAGCAGCATAACTCGACCGAACCAACCATTTTCTCCTAAAAGTGAGTGGAAAGAAGTCGATGAGGGCGGCTATAAGTTGATCGTCAATCTTCCAGGTAAATTTAATTAGAAGTTTAGTCCTTAGGATTTGAACAAAATTATAATTTAGTTATTATGATTTCATAAACTAGAATTTAATCCATGTGGTTTGAATGAATATAGAATTTAAACCTTGTAAATTTTAAAACTAGAATTTAATCTCTAATAAAAGCAAAAGAGTAGTCCTTGTCGTTTTTAATTGCCGACGAATTAAATATTTGAAAGTTAGTTATTCAAATGTCAACAAAGAAATTATGAATTAATGGATAGTGAATTTATGCATGAATTTTCACCAACAATGAATTTTCATGAATTTAATTTGATTACAATACGATAATAACTATGATCCAGTTTGATAATTATTTCGTTTTTGGTTTTCTGTTTTTAATATTTCAAAAATAGGCTCGTTTGATAACCAATTTTGGTTTTTGTTTTAAAAATTTTAAAAATATTAAAGAAAATCTAAACGCTAAAAAAAGTAGTTTTTAAAAACAAGTTTTCGTTTTCGTTTTTAAAAAAACATGAATAAATCAAGATTAAAGAGTAAAAAACTAAAAAAAATCAAAACAAAATGTGATATTTGAAAACAAAAAACAGTTATAAAAAATGTTTTTGATTTTTAGTTTTTTAAAACATAAAATTGGAATCAATTATCAAACATATAGGATTTTTAATTTTTAAAACAAAAAATCAAAAACCAAAAATGAAAAACAATAAACAAAAAATAAAAAACGAAATGGTTATCAAACACATTCTATATTTTTTAGATTTTATAAAATCATAAGGACTAAATTCAAAATTTTAAAATTATGTGGACTGATTTCTAATTTTCTTGAGACCATAAAAACTAAATTCTATATTTATCTCCAAACCATAGGAATTAAACTCTAGTTTTTGAAATCATTAGAACTAAACTTCAACATTCTTCAAACCATATGGACTTATATATTTACCCATATGATTAAATTATTAGAATGTTTTTGTAGATAACAAATTCTAGCATTTTTTAATTATAACATATTTTTTAAAAATATTATACATAGCAAAATATGAAATATTTAATTTGGTTGGAGACTATAGTTTCAAGTTTCATTAATCGAAATCTATTCACTTTCACTTGATTAAAATCTATCAATTTCTTTTGTTCACTTGATTCAAGTAACTAATTTAATGTGATTGAATCAGTTTTTGCTGTAATTTATTTTATATAGGTTTTTCGAAAGACCAAGTACGAATCAACCTGCATACAAGCTCGAGGCTTCTTATAATTATGGGACAAAAGACCGATGGCTATAGTGTCAAACGTTTGAATGAGCGCATAAAAATTGGTGATAAATGTCCAATAGATGAAGTTTGTGCAAGCTTAGAGTATGATGATCTTGTTGTTACGTTCCATCCAAAAAAAACAAGATCCTAATTCCATCCAATTCAAGATTTGCCTTGTTAATTAGTGAATAAATGCCAAACCATTATGTAATCCACAATAGACTAAGTTCATGTGGAAGATTGTGATGTTATGATCATGTAGAACAAAATGTAATATTAAATCAACTTATGTGGTCGTGGAATGAATACTATATGGTTTGTTTTTCAATGGTAATAAATGAGATTTTACTTGCAAA CTTTTTTTCCACTCATCAAATTATTCCACTTTAAATACAAAACAAAGCCAAAAGCAATATGAAAGGAATAAGTTCTTATGAAAAGAAGTAACATAGAAATTAGAATAACCCATATATAAATGCTCCTCTCTTGTATAAAGCCACATTGCTCATAATTATTTGGTTCGTTACATTTTCATATCATATTTTTCAATGTCAAGTCCGATCCTTGCACAAGATTGGAGCAGCATAACTCGACCGAACCAACCATTTTCTCCTAAAAGTGAGTGGAAAGAAGTCGATGAGGGCGGCTATAAGTTGATCGTCAATCTTCCAGGTTTTTCGAAAGACCAAGTACGAATCAACCTGCATACAAGCTCGAGGCTTCTTATAATTATGGGACAAAAGACCGATGGCTATAGTGTCAAACGTTTGAATGAGCGCATAAAAATTGGTGATAAATGTCCAATAGATGAAGTTTGTGCAAGCTTAGAGTATGATGATCTTGTTGTTACGTTCCATCCAAAAAAAACAAGATCCTAATTCCATCCAATTCAAGATTTGCCTTGTTAATTAGTGAATAAATGCCAAACCATTATGTAATCCACAATAGACTAAGTTCATGTGGAAGATTGTGATGTTATGATCATGTAGAACAAAATGTAATATTAAATCAACTTATGTGGTCGTGGAATGAATACTATATGGTTTGTTTTTCAATGGTAATAAATGAGATTTTACTTGCAAA ATGTCAAGTCCGATCCTTGCACAAGATTGGAGCAGCATAACTCGACCGAACCAACCATTTTCTCCTAAAAGTGAGTGGAAAGAAGTCGATGAGGGCGGCTATAAGTTGATCGTCAATCTTCCAGGTTTTTCGAAAGACCAAGTACGAATCAACCTGCATACAAGCTCGAGGCTTCTTATAATTATGGGACAAAAGACCGATGGCTATAGTGTCAAACGTTTGAATGAGCGCATAAAAATTGGTGATAAATGTCCAATAGATGAAGTTTGTGCAAGCTTAGAGTATGATGATCTTGTTGTTACGTTCCATCCAAAAAAAACAAGATCCTAA MSSPILAQDWSSITRPNQPFSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLIIMGQKTDGYSVKRLNERIKIGDKCPIDEVCASLEYDDLVVTFHPKKTRS Homology
BLAST of Sed0024214 vs. NCBI nr
Match: XP_022939359.1 (uncharacterized protein LOC111445297 [Cucurbita moschata]) HSP 1 Score: 101.3 bits (251), Expect = 5.5e-18 Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 0
BLAST of Sed0024214 vs. NCBI nr
Match: KAG7016359.1 (hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17 Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 0
BLAST of Sed0024214 vs. NCBI nr
Match: KAE8646641.1 (hypothetical protein Csa_005322 [Cucumis sativus]) HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16 Identity = 48/109 (44.04%), Postives = 75/109 (68.81%), Query Frame = 0
BLAST of Sed0024214 vs. NCBI nr
Match: KAG6602241.1 (hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 75.1 bits (183), Expect = 4.2e-10 Identity = 36/101 (35.64%), Postives = 61/101 (60.40%), Query Frame = 0
BLAST of Sed0024214 vs. NCBI nr
Match: KAG6578833.1 (Chlorophyll(ide) b reductase NOL, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07 Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 0
BLAST of Sed0024214 vs. ExPASy TrEMBL
Match: A0A6J1FGX8 (uncharacterized protein LOC111445297 OS=Cucurbita moschata OX=3662 GN=LOC111445297 PE=3 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 2.6e-18 Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 0
BLAST of Sed0024214 vs. ExPASy TrEMBL
Match: A0A0A0KB53 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 8.5e-17 Identity = 48/109 (44.04%), Postives = 75/109 (68.81%), Query Frame = 0
BLAST of Sed0024214 vs. ExPASy TrEMBL
Match: A0A5C7GXC0 (SHSP domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_025106 PE=3 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06 Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0
BLAST of Sed0024214 vs. ExPASy TrEMBL
Match: A0A3P6D0V5 (SHSP domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC2T06177H PE=3 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06 Identity = 30/89 (33.71%), Postives = 53/89 (59.55%), Query Frame = 0
BLAST of Sed0024214 vs. ExPASy TrEMBL
Match: A0A0S3SJ26 (SHSP domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G170100 PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06 Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 0
BLAST of Sed0024214 vs. TAIR 10
Match: AT3G10680.1 (HSP20-like chaperones superfamily protein ) HSP 1 Score: 48.5 bits (114), Expect = 3.9e-06 Identity = 25/84 (29.76%), Postives = 42/84 (50.00%), Query Frame = 0
BLAST of Sed0024214 vs. TAIR 10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein ) HSP 1 Score: 47.8 bits (112), Expect = 6.7e-06 Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 0
BLAST of Sed0024214 vs. TAIR 10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein ) HSP 1 Score: 45.4 bits (106), Expect = 3.3e-05 Identity = 26/93 (27.96%), Postives = 46/93 (49.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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