Sed0024214 (gene) Chayote v1

Overview
NameSed0024214
Typegene
OrganismSechium edule (Chayote v1)
DescriptionSHSP domain-containing protein
LocationLG03: 3400543 .. 3402463 (-)
RNA-Seq ExpressionSed0024214
SyntenySed0024214
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTTTCCACTCATCAAATTATTCCACTTTAAATACAAAACAAAGCCAAAAGCAATATGAAAGGAATAAGTTCTTATGAAAAGAAGTAACATAGAAATTAGAATAACCCATATATAAATGCTCCTCTCTTGTATAAAGCCACATTGCTCATAATTATTTGGTTCGTTACATTTTCATATCATATTTTTCAATGTCAAGTCCGATCCTTGCACAAGATTGGAGCAGCATAACTCGACCGAACCAACCATTTTCTCCTAAAAGTGAGTGGAAAGAAGTCGATGAGGGCGGCTATAAGTTGATCGTCAATCTTCCAGGTAAATTTAATTAGAAGTTTAGTCCTTAGGATTTGAACAAAATTATAATTTAGTTATTATGATTTCATAAACTAGAATTTAATCCATGTGGTTTGAATGAATATAGAATTTAAACCTTGTAAATTTTAAAACTAGAATTTAATCTCTAATAAAAGCAAAAGAGTAGTCCTTGTCGTTTTTAATTGCCGACGAATTAAATATTTGAAAGTTAGTTATTCAAATGTCAACAAAGAAATTATGAATTAATGGATAGTGAATTTATGCATGAATTTTCACCAACAATGAATTTTCATGAATTTAATTTGATTACAATACGATAATAACTATGATCCAGTTTGATAATTATTTCGTTTTTGGTTTTCTGTTTTTAATATTTCAAAAATAGGCTCGTTTGATAACCAATTTTGGTTTTTGTTTTAAAAATTTTAAAAATATTAAAGAAAATCTAAACGCTAAAAAAAGTAGTTTTTAAAAACAAGTTTTCGTTTTCGTTTTTAAAAAAACATGAATAAATCAAGATTAAAGAGTAAAAAACTAAAAAAAATCAAAACAAAATGTGATATTTGAAAACAAAAAACAGTTATAAAAAATGTTTTTGATTTTTAGTTTTTTAAAACATAAAATTGGAATCAATTATCAAACATATAGGATTTTTAATTTTTAAAACAAAAAATCAAAAACCAAAAATGAAAAACAATAAACAAAAAATAAAAAACGAAATGGTTATCAAACACATTCTATATTTTTTAGATTTTATAAAATCATAAGGACTAAATTCAAAATTTTAAAATTATGTGGACTGATTTCTAATTTTCTTGAGACCATAAAAACTAAATTCTATATTTATCTCCAAACCATAGGAATTAAACTCTAGTTTTTGAAATCATTAGAACTAAACTTCAACATTCTTCAAACCATATGGACTTATATATTTACCCATATGATTAAATTATTAGAATGTTTTTGTAGATAACAAATTCTAGCATTTTTTAATTATAACATATTTTTTAAAAATATTATACATAGCAAAATATGAAATATTTAATTTGGTTGGAGACTATAGTTTCAAGTTTCATTAATCGAAATCTATTCACTTTCACTTGATTAAAATCTATCAATTTCTTTTGTTCACTTGATTCAAGTAACTAATTTAATGTGATTGAATCAGTTTTTGCTGTAATTTATTTTATATAGGTTTTTCGAAAGACCAAGTACGAATCAACCTGCATACAAGCTCGAGGCTTCTTATAATTATGGGACAAAAGACCGATGGCTATAGTGTCAAACGTTTGAATGAGCGCATAAAAATTGGTGATAAATGTCCAATAGATGAAGTTTGTGCAAGCTTAGAGTATGATGATCTTGTTGTTACGTTCCATCCAAAAAAAACAAGATCCTAATTCCATCCAATTCAAGATTTGCCTTGTTAATTAGTGAATAAATGCCAAACCATTATGTAATCCACAATAGACTAAGTTCATGTGGAAGATTGTGATGTTATGATCATGTAGAACAAAATGTAATATTAAATCAACTTATGTGGTCGTGGAATGAATACTATATGGTTTGTTTTTCAATGGTAATAAATGAGATTTTACTTGCAAA

mRNA sequence

CTTTTTTTCCACTCATCAAATTATTCCACTTTAAATACAAAACAAAGCCAAAAGCAATATGAAAGGAATAAGTTCTTATGAAAAGAAGTAACATAGAAATTAGAATAACCCATATATAAATGCTCCTCTCTTGTATAAAGCCACATTGCTCATAATTATTTGGTTCGTTACATTTTCATATCATATTTTTCAATGTCAAGTCCGATCCTTGCACAAGATTGGAGCAGCATAACTCGACCGAACCAACCATTTTCTCCTAAAAGTGAGTGGAAAGAAGTCGATGAGGGCGGCTATAAGTTGATCGTCAATCTTCCAGGTTTTTCGAAAGACCAAGTACGAATCAACCTGCATACAAGCTCGAGGCTTCTTATAATTATGGGACAAAAGACCGATGGCTATAGTGTCAAACGTTTGAATGAGCGCATAAAAATTGGTGATAAATGTCCAATAGATGAAGTTTGTGCAAGCTTAGAGTATGATGATCTTGTTGTTACGTTCCATCCAAAAAAAACAAGATCCTAATTCCATCCAATTCAAGATTTGCCTTGTTAATTAGTGAATAAATGCCAAACCATTATGTAATCCACAATAGACTAAGTTCATGTGGAAGATTGTGATGTTATGATCATGTAGAACAAAATGTAATATTAAATCAACTTATGTGGTCGTGGAATGAATACTATATGGTTTGTTTTTCAATGGTAATAAATGAGATTTTACTTGCAAA

Coding sequence (CDS)

ATGTCAAGTCCGATCCTTGCACAAGATTGGAGCAGCATAACTCGACCGAACCAACCATTTTCTCCTAAAAGTGAGTGGAAAGAAGTCGATGAGGGCGGCTATAAGTTGATCGTCAATCTTCCAGGTTTTTCGAAAGACCAAGTACGAATCAACCTGCATACAAGCTCGAGGCTTCTTATAATTATGGGACAAAAGACCGATGGCTATAGTGTCAAACGTTTGAATGAGCGCATAAAAATTGGTGATAAATGTCCAATAGATGAAGTTTGTGCAAGCTTAGAGTATGATGATCTTGTTGTTACGTTCCATCCAAAAAAAACAAGATCCTAA

Protein sequence

MSSPILAQDWSSITRPNQPFSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLIIMGQKTDGYSVKRLNERIKIGDKCPIDEVCASLEYDDLVVTFHPKKTRS
Homology
BLAST of Sed0024214 vs. NCBI nr
Match: XP_022939359.1 (uncharacterized protein LOC111445297 [Cucurbita moschata])

HSP 1 Score: 101.3 bits (251), Expect = 5.5e-18
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 1   MSSPILAQDWSSITRPNQPFSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLI 60
           MSS I+ QDW  +TR +QPFSP ++W E +E    L + LPGF K+Q++I L+ ++R L 
Sbjct: 1   MSSQIVEQDWGDVTRSDQPFSPDTKWAE-EEHSRILSMKLPGFPKNQLQITLNAATRTLT 60

Query: 61  IMGQKTDG-YSVKRLNERIKIGDKCPIDEVCASLEYDDLVVTFHPKK 107
           + GQK DG +++ RLNERI I D C +D V A L    L VTF  KK
Sbjct: 61  VTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 106

BLAST of Sed0024214 vs. NCBI nr
Match: KAG7016359.1 (hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 1   MSSPILAQDWSSITRPNQPFSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLI 60
           MSS I+ QDW  +TR +QPFSP ++W E +E    L + LPGF K++++I L+ ++R L 
Sbjct: 1   MSSQIVEQDWRDVTRSDQPFSPDTKWAE-EEHSRILSMKLPGFPKNRLQITLNAATRTLT 60

Query: 61  IMGQKTDG-YSVKRLNERIKIGDKCPIDEVCASLEYDDLVVTFHPKK 107
           + GQK DG +++ RLNERI I D C +D V A L    L VTF  KK
Sbjct: 61  VTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDHTLFVTFSKKK 106

BLAST of Sed0024214 vs. NCBI nr
Match: KAE8646641.1 (hypothetical protein Csa_005322 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 48/109 (44.04%), Postives = 75/109 (68.81%), Query Frame = 0

Query: 1   MSSPILAQDWSS-ITRPNQPFSPKSEWKEVDE-GGYKLIVNLPGFSKDQVRINLHTSSRL 60
           MSS I+ QDW + +T+ NQ F P   ++E +E   +   + LPGFSKD++RINL+T +R+
Sbjct: 44  MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRI 103

Query: 61  LIIMGQKTDG-YSVKRLNERIKIGDKCPIDEVCASLEYDDLVVTFHPKK 107
           +++ GQK+DG +++ RLNER+ I + C ++ V A L  D L+VTF  +K
Sbjct: 104 IVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKEK 152

BLAST of Sed0024214 vs. NCBI nr
Match: KAG6602241.1 (hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-10
Identity = 36/101 (35.64%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 10  WSSITRPNQPFSPKSEWKEVDEGG---YKLIVNLPGFSKDQVRINLHTSSRLLIIMGQKT 69
           W  + +  + + P  EWKE  E     +++I++  G S++Q++I++    R + IM  K 
Sbjct: 8   WDEMDQQKENYRPNVEWKERKETNKDYFEMIIDFSGCSRNQLQISMSRELRTIDIMTTKK 67

Query: 70  DGYSVKRLNERIKIGDKCPIDEVCASLEYDDLVVTFHPKKT 108
           +GY++ R+NE I I  +C +D V AS   +DL++TF PKKT
Sbjct: 68  EGYNIARVNETIPIRPECSLDNVYASFVNNDLIITF-PKKT 107

BLAST of Sed0024214 vs. NCBI nr
Match: KAG6578833.1 (Chlorophyll(ide) b reductase NOL, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 0

Query: 1  MSSPILAQDWSSITRPNQPFSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLI 60
          MSS I+ QDW  +TR +QPFSP ++W E +E    L + LPGF K++++I L+ ++R L 
Sbjct: 1  MSSQIVEQDWRDVTRSDQPFSPDTKWAE-EEHSRILSMKLPGFPKNRLQITLNAATRTLT 60

Query: 61 IMGQKTD 68
          + GQK D
Sbjct: 61 VTGQKQD 66

BLAST of Sed0024214 vs. ExPASy TrEMBL
Match: A0A6J1FGX8 (uncharacterized protein LOC111445297 OS=Cucurbita moschata OX=3662 GN=LOC111445297 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.6e-18
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 1   MSSPILAQDWSSITRPNQPFSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLI 60
           MSS I+ QDW  +TR +QPFSP ++W E +E    L + LPGF K+Q++I L+ ++R L 
Sbjct: 1   MSSQIVEQDWGDVTRSDQPFSPDTKWAE-EEHSRILSMKLPGFPKNQLQITLNAATRTLT 60

Query: 61  IMGQKTDG-YSVKRLNERIKIGDKCPIDEVCASLEYDDLVVTFHPKK 107
           + GQK DG +++ RLNERI I D C +D V A L    L VTF  KK
Sbjct: 61  VTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDQTLFVTFSKKK 106

BLAST of Sed0024214 vs. ExPASy TrEMBL
Match: A0A0A0KB53 (SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.5e-17
Identity = 48/109 (44.04%), Postives = 75/109 (68.81%), Query Frame = 0

Query: 1   MSSPILAQDWSS-ITRPNQPFSPKSEWKEVDE-GGYKLIVNLPGFSKDQVRINLHTSSRL 60
           MSS I+ QDW + +T+ NQ F P   ++E +E   +   + LPGFSKD++RINL+T +R+
Sbjct: 1   MSSQIVNQDWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTRI 60

Query: 61  LIIMGQKTDG-YSVKRLNERIKIGDKCPIDEVCASLEYDDLVVTFHPKK 107
           +++ GQK+DG +++ RLNER+ I + C ++ V A L  D L+VTF  +K
Sbjct: 61  IVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEKEK 109

BLAST of Sed0024214 vs. ExPASy TrEMBL
Match: A0A5C7GXC0 (SHSP domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_025106 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 0

Query: 14  TRPNQPFSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLIIMG-QKTDGYSVK 73
           T  ++ + P SEWKE  E  Y L V+LP F+K+Q++I    SSR++ + G +K       
Sbjct: 7   TGDDEVYKPTSEWKEELE-NYTLTVHLPDFTKEQIKITCVKSSRMVRVHGDRKLANNKWS 66

Query: 74  RLNERIKIGDKCPIDEVCASLEYDDLVVTFHPKK 107
           R NE   I D C ID++ A    + L+VT  PK+
Sbjct: 67  RFNEAFPIPDNCKIDKIHAKWHNESLIVTM-PKE 98

BLAST of Sed0024214 vs. ExPASy TrEMBL
Match: A0A3P6D0V5 (SHSP domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC2T06177H PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 30/89 (33.71%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 20  FSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLIIMGQKTDGY-SVKRLNERI 79
           F PKSEWK+  +    L ++LPGF+++QV++    +S++L + G++  GY    R NE  
Sbjct: 11  FVPKSEWKDQPDATI-LTIDLPGFTREQVKVTFVHASKMLRVTGERPLGYRKWSRFNEMF 70

Query: 80  KIGDKCPIDEVCASLEYDDLVVTFHPKKT 108
            +   C +D++  S  ++ L +T  PK+T
Sbjct: 71  TVPRNCLVDKIHGSFSFNTLTITM-PKET 97

BLAST of Sed0024214 vs. ExPASy TrEMBL
Match: A0A0S3SJ26 (SHSP domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G170100 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 0

Query: 11  SSITRPNQPFSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLIIMGQK-TDGY 70
           SSI    + F PKSE KE +E  Y L++ LPGF K++++IN   SSRL+ + G++   G 
Sbjct: 19  SSIRPLYETFEPKSEMKE-NENAYLLLIYLPGFVKEKIKINFLKSSRLVRVTGERPLGGN 78

Query: 71  SVKRLNERIKIGDKCPIDEVCASLEYDDLVVTFHPKK 107
            +    +   + + C ++++    E   L VT  PKK
Sbjct: 79  RISNFEQTYSVPEDCEVEKLHGKYELGTLTVTM-PKK 113

BLAST of Sed0024214 vs. TAIR 10
Match: AT3G10680.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 3.9e-06
Identity = 25/84 (29.76%), Postives = 42/84 (50.00%), Query Frame = 0

Query: 20  FSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLIIMGQKTDGYSVK-RLNERI 79
           F P+++W       + L VNLPGF +DQ+ I     +R + I GQ+      K R +E  
Sbjct: 26  FKPRAQWTNSGSSIF-LYVNLPGFYRDQIEIKKDERTRTVQIQGQRPLSAQTKARFSEAY 85

Query: 80  KIGDKCPIDEVCASLEYDDLVVTF 103
           ++ D C + ++  S  +  L + F
Sbjct: 86  RVPDTCDMTKLSTSFSHGLLTIEF 108

BLAST of Sed0024214 vs. TAIR 10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 6.7e-06
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 0

Query: 9   DWSSITRPNQPFSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLIIMGQKTDG 68
           D ++  R    F P S WK  ++G   L + LPGF K+Q+++ + T++R L +MG +  G
Sbjct: 6   DHANANRIYDEFEPLSNWK-TEQGFEALTIYLPGFRKEQLKVQV-TTTRKLRVMGDRPAG 65

Query: 69  YSV-KRLNERIKIGDKCPIDEVCASLEYDDLVV 101
            +   R  +   I     +D V A  E  +LVV
Sbjct: 66  ANKWIRFRKEFPIPPNIDVDSVSAKFEGANLVV 96

BLAST of Sed0024214 vs. TAIR 10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.3e-05
Identity = 26/93 (27.96%), Postives = 46/93 (49.46%), Query Frame = 0

Query: 13  ITRPNQPFSPKSEWKEVDEGGYKLIVNLPGFSKDQVRINLHTSSRLLIIMGQKTDGYSVK 72
           I R  Q F P + W   +     L+ +LPGF K+Q+++++  + +L +   + T G    
Sbjct: 6   IERVYQEFEPATRWTS-EPDAEVLVADLPGFKKEQLKVSVTATRKLRLTGERPTGGNKWI 65

Query: 73  RLNERIKIGDKCPIDEVCASLEYDDLVVTFHPK 106
           R ++ I +     ID V A  + + L +  HPK
Sbjct: 66  RFHQEIPVPLTVDIDSVSAMFKDNKLYIR-HPK 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022939359.15.5e-1848.60uncharacterized protein LOC111445297 [Cucurbita moschata][more]
KAG7016359.12.7e-1747.66hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAE8646641.11.8e-1644.04hypothetical protein Csa_005322 [Cucumis sativus][more]
KAG6602241.14.2e-1035.64hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6578833.11.5e-0746.27Chlorophyll(ide) b reductase NOL, chloroplastic, partial [Cucurbita argyrosperma... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FGX82.6e-1848.60uncharacterized protein LOC111445297 OS=Cucurbita moschata OX=3662 GN=LOC1114452... [more]
A0A0A0KB538.5e-1744.04SHSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046370 PE=3 S... [more]
A0A5C7GXC01.4e-0638.30SHSP domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_025106 PE=... [more]
A0A3P6D0V52.3e-0633.71SHSP domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC2T06177H PE=3... [more]
A0A0S3SJ263.0e-0635.05SHSP domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vi... [more]
Match NameE-valueIdentityDescription
AT3G10680.13.9e-0629.76HSP20-like chaperones superfamily protein [more]
AT2G27140.16.7e-0632.26HSP20-like chaperones superfamily protein [more]
AT5G20970.13.3e-0527.96HSP20-like chaperones superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 3..109
e-value: 5.7E-9
score: 37.8
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 16..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR43670:SF73OS03G0656000 PROTEINcoord: 16..105
IPR045045Small heat shock protein RTM2-likePANTHERPTHR43670HEAT SHOCK PROTEIN 26coord: 16..105
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 15..109
score: 11.700875

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024214.1Sed0024214.1mRNA