Sed0024198 (gene) Chayote v1

Overview


Name	Sed0024198
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Location	LG12: 5122461 .. 5123461 (+)
RNA-Seq Expression	Sed0024198
Synteny	Sed0024198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAAAGGAAGCCATCAGAACATAAACCCTAAAACCTCAAAATCCACCGCCGAATCTCCCAGCCACGACCGGCGGCGACGATGAGGCCATTAGACGAGAAAGAAACCACCGTAGTCTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCAGCTCACGAAGGGCCGGAGCCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAGCTCTATTACGTCAGCGACGCCCTGGTCAAGCGAGCCACCAACATAGCCCGCAACAACCTCGTCGCGCTCGGCACCTGCATCGGAAAGTTCACTCACGGCGGCAGCTTTCACCTCACCGTTCACTCGCTAGGGCTTTTGGCCCCCAACGCCAAGCACAAGGTTTGGCTCAAACCTTCCTCTGAAATGTCGTTTTTGTACGGAAATCATGTCGTGAAAGGTGGATTGGGGCGGATTACTGAGAATATTGCTCCGGGTGATGGGGTTGTTGTGTATTCTATGTCCGATGTGGCTTTGGGATTTGGCGTTGCCGCGAAGTCTACTCAGGATTGCAGGAAATTGGATCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGGGAGTATTTGAGGATGGAGGATGAGCTTTGAATCAAGAATCAACATCATTTGTGGCCAAATCGAGCCCAAATTGATGCATTGCCTTTGGCGTCAAGCCGGATTTGTAAGTTCTACACCATAGTGTTGAGTTTTATAGCTTTAAGAGAATGTTAAGTTTATGTGAATGATTGATCTATTGCCCCAATGTTGGGTTATCTAATATCATAGAGATCTGATAGTGTGCTTATTGCTTTGCTGCTTACTAATAATTTCTTCATTCTTAGGATTGTATTGATGTTTTTTTATTGATTTTCTGTTGATCCACACTTTGACAAGTGTTGAATTATGTTAAACCACCAATCAATTCAATAGCCTAAGCTGATGGATTGAGATAAATTTAATTATAT

mRNA sequence

TGAAAAAGGAAGCCATCAGAACATAAACCCTAAAACCTCAAAATCCACCGCCGAATCTCCCAGCCACGACCGGCGGCGACGATGAGGCCATTAGACGAGAAAGAAACCACCGTAGTCTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCAGCTCACGAAGGGCCGGAGCCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAGCTCTATTACGTCAGCGACGCCCTGGTCAAGCGAGCCACCAACATAGCCCGCAACAACCTCGTCGCGCTCGGCACCTGCATCGGAAAGTTCACTCACGGCGGCAGCTTTCACCTCACCGTTCACTCGCTAGGGCTTTTGGCCCCCAACGCCAAGCACAAGGTTTGGCTCAAACCTTCCTCTGAAATGTCGTTTTTGTACGGAAATCATGTCGTGAAAGGTGGATTGGGGCGGATTACTGAGAATATTGCTCCGGGTGATGGGGTTGTTGTGTATTCTATGTCCGATGTGGCTTTGGGATTTGGCGTTGCCGCGAAGTCTACTCAGGATTGCAGGAAATTGGATCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGGGAGTATTTGAGGATGGAGGATGAGCTTTGAATCAAGAATCAACATCATTTGTGGCCAAATCGAGCCCAAATTGATGCATTGCCTTTGGCGTCAAGCCGGATTTGTAAGTTCTACACCATAGTGTTGAGTTTTATAGCTTTAAGAGAATGTTAAGTTTATGTGAATGATTGATCTATTGCCCCAATGTTGGGTTATCTAATATCATAGAGATCTGATAGTGTGCTTATTGCTTTGCTGCTTACTAATAATTTCTTCATTCTTAGGATTGTATTGATGTTTTTTTATTGATTTTCTGTTGATCCACACTTTGACAAGTGTTGAATTATGTTAAACCACCAATCAATTCAATAGCCTAAGCTGATGGATTGAGATAAATTTAATTATAT

Coding sequence (CDS)

ATGAGGCCATTAGACGAGAAAGAAACCACCGTAGTCTTCGAAAAGCTCCACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCAGCTCACGAAGGGCCGGAGCCAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAGAACAAGCTCTATTACGTCAGCGACGCCCTGGTCAAGCGAGCCACCAACATAGCCCGCAACAACCTCGTCGCGCTCGGCACCTGCATCGGAAAGTTCACTCACGGCGGCAGCTTTCACCTCACCGTTCACTCGCTAGGGCTTTTGGCCCCCAACGCCAAGCACAAGGTTTGGCTCAAACCTTCCTCTGAAATGTCGTTTTTGTACGGAAATCATGTCGTGAAAGGTGGATTGGGGCGGATTACTGAGAATATTGCTCCGGGTGATGGGGTTGTTGTGTATTCTATGTCCGATGTGGCTTTGGGATTTGGCGTTGCCGCGAAGTCTACTCAGGATTGCAGGAAATTGGATCCGAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGGGAGTATTTGAGGATGGAGGATGAGCTTTGA

Protein sequence

MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALVKRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNHVVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL

Homology

[Close]

BLAST of Sed0024198 vs. NCBI nr
Match: XP_038878449.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Benincasa hispida])

HSP 1 Score: 374.4 bits (960), Expect = 5.7e-100
Identity = 176/187 (94.12%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPLDE+ETTVVFEKLHKFTGNNLKNIVENP+HEGPEPNPGRYCFRLHKNK+YYVSD+LV
Sbjct: 1   MRPLDEQETTVVFEKLHKFTGNNLKNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           KRATN+AR+NLVALGTCIGKFTHGGSFHLTVHSLGLL+PNAKHKVWLKP+SEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+KGGLGRITENI+PGDGVVVYSMSDV LGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENISPGDGVVVYSMSDVPLGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Sed0024198 vs. NCBI nr
Match: XP_022973782.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima])

HSP 1 Score: 370.5 bits (950), Expect = 8.3e-99
Identity = 174/187 (93.05%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENPAHEGPE NPGRYCFRLHKNK+YYVSD+LV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           KRATN+ARNNLVALGTCIGKFTHGGSFHLTVHSLGLL+ NA+HKVWLKP+SEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHSLGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+KGGLGRITENIAPGDGVVVYSMSD+ LGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Sed0024198 vs. NCBI nr
Match: XP_022948024.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_023539905.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >KAG6597515.1 60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028973.1 60S ribosome subunit biogenesis protein NIP7-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 369.8 bits (948), Expect = 1.4e-98
Identity = 174/187 (93.05%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENPAHEGPE NPGRYCFRLHKNK+YYVSD+LV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           KRATN+ARNNLVALGTCIGKFTHGGSFHLTVH+LGLL+ NA+HKVWLKP+SEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+KGGLGRITENIAPGDGVVVYSMSDV LGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Sed0024198 vs. NCBI nr
Match: XP_022137772.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Momordica charantia])

HSP 1 Score: 369.4 bits (947), Expect = 1.8e-98
Identity = 174/187 (93.05%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPLDEKETT VFEKLHKFTGNNL+NIVENP+HEGPEPNPGRYCFRLHKNK+YYVSD+LV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLRNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           KRATN+AR NLVALGTCIGK THGGSFHLTV SLGLLAPNAKHKVWLKP+SEMSFLYGNH
Sbjct: 61  KRATNVARRNLVALGTCIGKITHGGSFHLTVQSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+KGGLGRITENIAPGDGVVVYSMSDV LGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Sed0024198 vs. NCBI nr
Match: XP_023528444.1 (60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528446.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528447.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528448.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528449.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo] >XP_023528450.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 369.4 bits (947), Expect = 1.8e-98
Identity = 174/187 (93.05%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENP+HEGP PNPGRYCFRLHKNK+YYVSD+LV
Sbjct: 25  MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPGPNPGRYCFRLHKNKVYYVSDSLV 84

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           KRATN+AR+NLVALGTCIGKFTHGGSFHLTVHSLGLL+ NAKHKVWLKP+SEMSFLYGNH
Sbjct: 85  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 144

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+KGGLGRITENIAPGDGVVVYSMSDV LGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 145 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 204

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 205 LRMEDEL 211

[Close]

BLAST of Sed0024198 vs. ExPASy Swiss-Prot
Match: A4QND5 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=8364 GN=nip7 PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.4e-61
Identity = 114/187 (60.96%), Postives = 141/187 (75.40%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRLH +++YYVS+ ++
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYVSERIL 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           K ATNIAR+ LV+LGTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+K GLGRITEN +   GVVVYSM+D+ LGFGVAAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Sed0024198 vs. ExPASy Swiss-Prot
Match: Q6DFH9 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 GN=nip7 PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-60
Identity = 114/187 (60.96%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPL ++ET  +FEKL K+ G N+K +V+ P         G YCFRLH +++YYVS+ ++
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYVSEKIL 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           K ATNIAR+ LV+ GTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+K GLGRITEN +   GVVVYSM+DV LGFGVAAKSTQ+CRKLDP  IVV HQ+D+GEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEY 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRHEDTL 179

[Close]

BLAST of Sed0024198 vs. ExPASy Swiss-Prot
Match: Q4T2X8 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis OX=99883 GN=nip7 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.9e-60
Identity = 111/187 (59.36%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPL E+ET  +FEKL K+ G N+K +V+ P         G YCFRLH +++YY+S+ ++
Sbjct: 1   MRPLTEEETKTMFEKLSKYIGENIKLLVDRP--------DGTYCFRLHNDRVYYMSERIL 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           K ATNIAR  LV++GTC GKFT    F L + +L  LAP AK KVW+KP +E SFLYGNH
Sbjct: 61  KLATNIARQKLVSVGTCFGKFTKTSKFRLHITALDFLAPYAKFKVWVKPGAEQSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+K GLGRITEN A   GVVVYSM+DV LGFGVAAKSTQ+CR++DP  IVV HQ+D+GE+
Sbjct: 121 VLKSGLGRITENTAQYQGVVVYSMADVPLGFGVAAKSTQECRRVDPMSIVVFHQADVGEF 179

Query: 181 LRMEDEL 188
           +R ED L
Sbjct: 181 IRNEDSL 179

[Close]

BLAST of Sed0024198 vs. ExPASy Swiss-Prot
Match: Q9WV50 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=10116 GN=Nip7 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-59
Identity = 113/187 (60.43%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRLH +++YYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRP--------DGTYCFRLHNDRVYYVSEMIL 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           K A NI+ + LV+LGTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+K GLGRITEN +   GVVVYSM+DV LGFGVAAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 IRHEETL 179

[Close]

BLAST of Sed0024198 vs. ExPASy Swiss-Prot
Match: Q9Y221 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=NIP7 PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.0e-59
Identity = 112/187 (59.89%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPL E+ET V+FEK+ K+ G NL+ +V+ P         G YCFRLH +++YYVS+ ++
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRP--------DGTYCFRLHNDRVYYVSEKIM 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           K A NI+ + LV+LGTC GKFT    F L V +L  LAP AK+KVW+KP +E SFLYGNH
Sbjct: 61  KLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+K GLGRITEN +   GVVVYSM+D+ LGFGVAAKSTQDCRK+DP  IVV HQ+DIGEY
Sbjct: 121 VLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEY 179

Query: 181 LRMEDEL 188
           +R E+ L
Sbjct: 181 VRHEETL 179

[Close]

BLAST of Sed0024198 vs. ExPASy TrEMBL
Match: A0A6J1I8G6 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661 GN=LOC111472343 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.0e-99
Identity = 174/187 (93.05%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENPAHEGPE NPGRYCFRLHKNK+YYVSD+LV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           KRATN+ARNNLVALGTCIGKFTHGGSFHLTVHSLGLL+ NA+HKVWLKP+SEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHSLGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+KGGLGRITENIAPGDGVVVYSMSD+ LGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Sed0024198 vs. ExPASy TrEMBL
Match: A0A6J1G8L8 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=3662 GN=LOC111451723 PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 6.8e-99
Identity = 174/187 (93.05%), Postives = 183/187 (97.86%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENPAHEGPE NPGRYCFRLHKNK+YYVSD+LV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           KRATN+ARNNLVALGTCIGKFTHGGSFHLTVH+LGLL+ NA+HKVWLKP+SEMSFLYGNH
Sbjct: 61  KRATNVARNNLVALGTCIGKFTHGGSFHLTVHALGLLSANARHKVWLKPTSEMSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+KGGLGRITENIAPGDGVVVYSMSDV LGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Sed0024198 vs. ExPASy TrEMBL
Match: A0A6J1C974 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Momordica charantia OX=3673 GN=LOC111009133 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 8.9e-99
Identity = 174/187 (93.05%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPLDEKETT VFEKLHKFTGNNL+NIVENP+HEGPEPNPGRYCFRLHKNK+YYVSD+LV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLRNIVENPSHEGPEPNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           KRATN+AR NLVALGTCIGK THGGSFHLTV SLGLLAPNAKHKVWLKP+SEMSFLYGNH
Sbjct: 61  KRATNVARRNLVALGTCIGKITHGGSFHLTVQSLGLLAPNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+KGGLGRITENIAPGDGVVVYSMSDV LGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Sed0024198 vs. ExPASy TrEMBL
Match: A0A6J1GYK7 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=3662 GN=LOC111458029 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.6e-98
Identity = 174/187 (93.05%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNK+YYVSD+LV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           KRATN+AR+NLVALGTCIGKFTHGGSFHLTVHSLGLLA NAKHKVWLKP+SEMSFLYGNH
Sbjct: 61  KRATNVARSNLVALGTCIGKFTHGGSFHLTVHSLGLLASNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+KGGLGRITENIAPGDGVVVYSMSDV LGFG+A KSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIATKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Sed0024198 vs. ExPASy TrEMBL
Match: A0A6J1IQ28 (60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661 GN=LOC111479477 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 5.8e-98
Identity = 173/187 (92.51%), Postives = 182/187 (97.33%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPLDEKETT VFEKLHKFTGNNLKNIVENP+HEGPE NPGRYCFRLHKNK+YYVSD+LV
Sbjct: 1   MRPLDEKETTAVFEKLHKFTGNNLKNIVENPSHEGPELNPGRYCFRLHKNKVYYVSDSLV 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           KRATN+AR+NLV LGTCIGKFTHGGSFHLTVHSLGLL+ NAKHKVWLKP+SEMSFLYGNH
Sbjct: 61  KRATNVARSNLVVLGTCIGKFTHGGSFHLTVHSLGLLSSNAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+KGGLGRITENIAPGDGVVVYSMSDV LGFG+AAKSTQDCRKLDPNGIVVLHQSDIGEY
Sbjct: 121 VLKGGLGRITENIAPGDGVVVYSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEY 180

Query: 181 LRMEDEL 188
           LRMEDEL
Sbjct: 181 LRMEDEL 187

[Close]

BLAST of Sed0024198 vs. TAIR 10
Match: AT4G15770.1 (RNA binding )

HSP 1 Score: 322.8 bits (826), Expect = 1.8e-88
Identity = 152/187 (81.28%), Postives = 169/187 (90.37%), Query Frame = 0


Query: 1   MRPLDEKETTVVFEKLHKFTGNNLKNIVENPAHEGPEPNPGRYCFRLHKNKLYYVSDALV 60
           MRPLDE ETTVVFEKL KF GNNLK IVENP+ EGPE  PG YCFRL KN++YYVS+ALV
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGPESTPGSYCFRLQKNRVYYVSEALV 60

Query: 61  KRATNIARNNLVALGTCIGKFTHGGSFHLTVHSLGLLAPNAKHKVWLKPSSEMSFLYGNH 120
           KRATNI+R NLV+ GTCIGK+TH GSFHLT+ SL +LA NAKHKVWLKP+SEMSFLYGNH
Sbjct: 61  KRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYGNH 120

Query: 121 VVKGGLGRITENIAPGDGVVVYSMSDVALGFGVAAKSTQDCRKLDPNGIVVLHQSDIGEY 180
           V+KGGLGRIT++I PGDGVVV+SMSDV LGFG+AAKSTQDCRKLDPNGIVVLHQ+DIGEY
Sbjct: 121 VLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIGEY 180

Query: 181 LRMEDEL 188
           LR ED+L
Sbjct: 181 LRGEDDL 187

The following BLAST results are available for this feature:

BLAST of Sed0024198 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878449.1	5.7e-100	94.12	60S ribosome subunit biogenesis protein NIP7 homolog [Benincasa hispida]	[more]
XP_022973782.1	8.3e-99	93.05	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita maxima]	[more]
XP_022948024.1	1.4e-98	93.05	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita moschata] >XP_02...	[more]
XP_022137772.1	1.8e-98	93.05	60S ribosome subunit biogenesis protein NIP7 homolog [Momordica charantia]	[more]
XP_023528444.1	1.8e-98	93.05	60S ribosome subunit biogenesis protein NIP7 homolog [Cucurbita pepo subsp. pepo...	[more]

BLAST of Sed0024198 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QND5	5.4e-61	60.96	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis OX=83...	[more]
Q6DFH9	1.2e-60	60.96	60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis OX=8355 G...	[more]
Q4T2X8	7.9e-60	59.36	60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis O...	[more]
Q9WV50	1.3e-59	60.43	60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus OX=101...	[more]
Q9Y221	3.0e-59	59.89	60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens OX=9606 GN=...	[more]

BLAST of Sed0024198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I8G6	4.0e-99	93.05	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1G8L8	6.8e-99	93.05	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=36...	[more]
A0A6J1C974	8.9e-99	93.05	60S ribosome subunit biogenesis protein NIP7 homolog OS=Momordica charantia OX=3...	[more]
A0A6J1GYK7	2.6e-98	93.05	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita moschata OX=36...	[more]
A0A6J1IQ28	5.8e-98	92.51	60S ribosome subunit biogenesis protein NIP7 homolog OS=Cucurbita maxima OX=3661...	[more]

BLAST of Sed0024198 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15770.1	1.8e-88	81.28	RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 103..178 e-value: 6.2E-17 score: 72.3
IPR040598	UPF0113, pre-PUA domain	PFAM	PF17833	UPF0113_N	coord: 2..90 e-value: 7.0E-23 score: 80.9
IPR016686	Ribosome biogenesis factor, NIP7	PIRSF	PIRSF017190	NIP7	coord: 1..187 e-value: 7.3E-78 score: 258.1
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 102..187 e-value: 4.0E-41 score: 140.8
None	No IPR available	GENE3D	3.10.450.220		coord: 1..101 e-value: 5.4E-36 score: 124.5
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..187
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 1..187
None	No IPR available	PROSITE	PS50890	PUA	coord: 102..178 score: 14.413481
None	No IPR available	SUPERFAMILY	88802	Pre-PUA domain	coord: 1..101
IPR005155	UPF0113, PUA domain	PFAM	PF03657	UPF0113	coord: 104..182 e-value: 2.5E-21 score: 75.7
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 103..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024198.1	Sed0024198.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0042255	ribosome assembly
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding