Sed0024195 (gene) Chayote v1

Overview
NameSed0024195
Typegene
OrganismSechium edule (Chayote v1)
Descriptiontrafficking protein particle complex subunit 2-like protein
LocationLG05: 35097447 .. 35101405 (+)
RNA-Seq ExpressionSed0024195
SyntenySed0024195
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGTCAAAAAATATAATTTGGACTAAACTTGTAATTTAATGGGGGATATAAGGGTCAAATGATCATTTCACAAGTAAGAAATTTCCTTTTTGTGTAGAAGAATCGACCTTCGCCGTGGTATCGCAACCAGGCAAAAGTTTTGCCGCACTCTTCCGCCGGCCGGCCACCGTCGAAGATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGGTTCGACCTCCATGAACACAATATTTTACGGCTCCGAAAACAATTTCGTATTATGTTTATAAGATTTGTGATCCTACAGAACAACCCCCTTTACATTCAAAGCTTCACGGAAGCGGACGATGCTCTCAAGCTCCACCACATTGTTCACTGTTCGTTGGATGTCGTCGATGAGCGAGGTATGTTTATCTGATGATATTTGATCGGATCTAGGAATCGCGCCTGATGTTGGACTTGTTTTTTTTATCATTTTCCAATTCTTTGTTCTGATGTTGTTTGCGGATTTTCTGCCAGTGAATAATCCGAGAAAATCTGGACCGACCTTGAACGAGACCTTTCTTGGTCTTCTTTATCCGACTGAGAATTACAAAGTGTGAGTTAGATTGTTTAAGCTCTGAGGGATTTTTCATTTTTCATATGAAGTTGGATCGAAATGTGTTTTTCTTTCAATTTCAATTGGAGTGGTCTTTTGATGTTCTGTACTATTGAAATCATTTTCAGGTATGGGTATTTGACGAACACTAAAGTGAAGTTTATTATGGTGACCACAGATCTAGATGTTAGAGATGCTGATGTGAGAAATGTGAGTACCATTGTAGTTTTGCTGTTTTTCTATTCGTTTATAGATCTTTAATTTTTCCCCTGTGAACTCTCACTGTAAGGTAGCTTTAAAGAAGAAGAAGATTATCAGAGTGTTGTCTATTTGTGAAGATGTTAGTGATGCAATTGCAAACACTTAATGTCAATGAGTGATTCCTATTATTTAAGGGTTTTAGGTTACTTGGTTTCCTACCTAGGAACTAATTTCTTCGATAGCCAAATATTATAGGGCTAGGAGGTCTGTCCCGTGAGAACAATCAAGGTGTAAGCTGGTCTGAACACTCACGGATATTAAAAAAAATCCTATTATTTAGTTGCTTTTTCGATTTTTTTATTTGAACGATTACGGGTAACCTTTCACATGGTAGCTGTTTAAGTAGTGATGTGAAGTTGAACATATTCAAAGTGAGAAGTCATATAGAAATGGTTATATTTCCTTCATGGCCACCTGACACCAGAATTGATGTCTATCAAAATCTCGAATAAGCTTCTTATCTCAAAATATTTATGTTAAATTCCTAGAACACATTCTAACAACAGGATTTTTTTTAACAATATGCAATTGATGGTCATTATTATGCTTTTTTTATTTCTAGAAAGCATGATTTTCTGTTATCATTTGTTCTATAATTTGATAGACCAAGTGTTGCATGATTTTATTTTTGACAAGCCTTGCTTATTTAAGGGAGTTTTGGTTTGTTTGTTTGGAAAATCTGAGTTTGAGTAGTTTGAATAAGGAGGCTAATATTTTGTAGCATTTATTTGAATTGTGTGGAGGATTTAGTTTTAATAAGTTTCGCTTTTGTACGATTTGTGTTTGAATTGCAAGTTTTATATTTTTAAACGTTAGTGATTAGTATGAAAGATTAGTTCTAGGAGTATGAGTTTATGGAGTCTATAGACTGGGAATTCGTAATTTGAGATGAGCTGAATCACATACCATGGATAGGCTAGCTTCTTTACTTTTCTGTTGAGTATTTGGCTTGAGAAAAACAATAGGACAATCAGGAAAAATAAGAAGTCAGGTAAGGGAGTTTGGGAGTTTTTTGGGTTTTATGCTTCTTTGCGGGTACCAGTCCCTAGACCTTTTGTCAATATGGTTTTTGAATCAACAATATTTAAAGGTGGGGGATTTGAATTTGTAGCCTCTTGGTTATCCCATCTTACATCATACCATTGTTGGCTTTATAATTATGGTCTCAATCTTGTTTTTTATATTAGAGTCCATTTTTGTAGTTAGCATTAGACTCTCCTTTCTCTTGGCCGTTTTTCATATGCCTTTGTATTCTTTCATTTTCTTTTAACTAAGTCAATACAAATCTAACCATAAGCCAGATGACAAACACCCTCTTGTAGTTGTTCAGTATCTATTCTCCAAGTGATACCACTTTGATGTCTGGACTGATTCACCCTCTTTCTCCGTATTATATCTGAGTATGTATTGTTTATAACTATTCCTTTTCCGAAAAATAATTGTAATGCAAGAAATTTTGATTTTGTCTTGCATATTTGTACACCTTGTTCATGTTTCAAAAAGCGGTTGAGGCGTACGCCTCAAGGCGCGCCTCGAGGCGAGGCGGTAATGAAATGCCTCAAGGCTTACGCCTTGATGATCCAAAATGAGGCTTACGCCTTTTTTGACAGAGGCGTACGCCTCAAGGCAAATGCCTCAAGGCAGAAAGGCTTACGCCTTGTATTTACTATTTGTTCAACAAGCCCTCAAATTCTTTACATTAGTTTTAAATATATTACTTACTGTGGGTCCAAATAATGATGAAAAAGTAATCTCTTTTGTTGACTTTAATTTAATTGACACCCACCGATTAGAAAAGAAAAAAGAAAAACAGGTGTCTCTCTTCTACAACAATGCAAGGGTTTCATTTTTTGAAATTTTCAAGTTGAACTTTCCTTTCTTTTCACAAGAAAAAAGAAAAAGAAAAACATGTTCTCTTCTACAGCAACACAACAAGGTGGGATTTTGTCTTTAAAAAAAGGGTGGGATTTATTTTTAAAGTTGAACTTTCTTACGGGAGGTTGTATTTGTTTGAATGTTTTTTTCTTTCTATTTTCTTCTAAATAGATTATTATCCCCTAATTTTTTCTTGTCCACATGTTTAAGATCTCTCTTTCAATTTATCTTACTTGTTTTTTCTTTCTTACTATTAGTTTGGGTATCATTATCATGAACTTTCACATTTTTTCCTTTTTTAAAATTATTTCTGCATTCTATTCTTTCTTTCTTATTATTTGTTAGTTATTTTTGTGTTATGTTTTCCCTTGTTTCTTCCCTCCATATTAAGTTTTTTAGACCTTGATTTTTATGATTTATATATTTTTTTTTCTTTAAAATGAGGCTTACGCCTCGCCTCTCCATGAGAAAACGCCTCGAGGCCGCCTTAGGCCTTTTAAAACATTGCACCTTGTTAGCATATACGGAACTTTAACTATCATGAGTTGGTTTAGTTAGTGGTCAAGAGATTTGTGAAGAACCAAAAAGTTACGGATTCAATCCATAATAACCATTTATTTAAGAATTAATTTCTTATAGATTTTCTTGACATCCTAATATTGTAGGATTATATGTAAATTATTCTATGAAAAATAGTTAAGGTGTGCATAAGTTGACATGAATACTCACGGTTATAAAAAAAATACACGAAACTTCGTAATATGACATGTGACGCGCTCTTTGAATTTGTGTGCAGTTTTTCCGGAGATTTCATGCCGCATATGTGGATGCAGTTTCAAACCCATTTCATGTGCCAGGTAAAAAAATTACTTCCAAAACTTTTGAAGAAAGTGTGAGCACCATCGTGAAGTCGTTTGGGTTCAGTTCAGCTATTTGAGTAAACAACCACTGAAACTTGAATACCAAGTCTGAAGCCGTCGATATCTGTAGTTCATTTACTGCTTTGTCTCCTAATCTTTCTTTTCTTTTTTTTGTTGATTTTCTTTGAAATATTTTTTCTAGAATTGTAGTAAGAAAGATGAACAAATGGTGTCGACTTTTTCTAGTTTTTCGCAATACTGTCCAGCTTTTTTTTCAATTGAGATTAACTGTTCCTATTTTATGTCTAACTGGATTGTGTTTCAAGGTGCAATATACTCCACGTTAAATGCAAGATTGAAAGGTGAGAATGAAGGTTTGTGTTA

mRNA sequence

TTTGTCAAAAAATATAATTTGGACTAAACTTGTAATTTAATGGGGGATATAAGGGTCAAATGATCATTTCACAAGTAAGAAATTTCCTTTTTGTGTAGAAGAATCGACCTTCGCCGTGGTATCGCAACCAGGCAAAAGTTTTGCCGCACTCTTCCGCCGGCCGGCCACCGTCGAAGATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAAGCGGACGATGCTCTCAAGCTCCACCACATTGTTCACTGTTCGTTGGATGTCGTCGATGAGCGAGTGAATAATCCGAGAAAATCTGGACCGACCTTGAACGAGACCTTTCTTGGTCTTCTTTATCCGACTGAGAATTACAAAGTGTATGGGTATTTGACGAACACTAAAGTGAAGTTTATTATGGTGACCACAGATCTAGATGTTAGAGATGCTGATGTGAGAAATTTTTTCCGGAGATTTCATGCCGCATATGTGGATGCAGTTTCAAACCCATTTCATGTGCCAGGTAAAAAAATTACTTCCAAAACTTTTGAAGAAAGTGTGAGCACCATCGTGAAGTCGTTTGGGTTCAGTTCAGCTATTTGAGTAAACAACCACTGAAACTTGAATACCAAGTCTGAAGCCGTCGATATCTGTAGTTCATTTACTGCTTTGTCTCCTAATCTTTCTTTTCTTTTTTTTGTTGATTTTCTTTGAAATATTTTTTCTAGAATTGTAGTAAGAAAGATGAACAAATGGTGTCGACTTTTTCTAGTTTTTCGCAATACTGTCCAGCTTTTTTTTCAATTGAGATTAACTGTTCCTATTTTATGTCTAACTGGATTGTGTTTCAAGGTGCAATATACTCCACGTTAAATGCAAGATTGAAAGGTGAGAATGAAGGTTTGTGTTA

Coding sequence (CDS)

ATGATCGTCTGCGTCGCCGTCGTCGGCCACCAGAACAACCCCCTTTACATTCAAAGCTTCACGGAAGCGGACGATGCTCTCAAGCTCCACCACATTGTTCACTGTTCGTTGGATGTCGTCGATGAGCGAGTGAATAATCCGAGAAAATCTGGACCGACCTTGAACGAGACCTTTCTTGGTCTTCTTTATCCGACTGAGAATTACAAAGTGTATGGGTATTTGACGAACACTAAAGTGAAGTTTATTATGGTGACCACAGATCTAGATGTTAGAGATGCTGATGTGAGAAATTTTTTCCGGAGATTTCATGCCGCATATGTGGATGCAGTTTCAAACCCATTTCATGTGCCAGGTAAAAAAATTACTTCCAAAACTTTTGAAGAAAGTGTGAGCACCATCGTGAAGTCGTTTGGGTTCAGTTCAGCTATTTGA

Protein sequence

MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKKITSKTFEESVSTIVKSFGFSSAI
Homology
[Close]
BLAST of Sed0024195 vs. NCBI nr
Match: XP_022928280.1 (trafficking protein particle complex subunit 2-like protein [Cucurbita moschata] >XP_022989273.1 trafficking protein particle complex subunit 2-like protein [Cucurbita maxima] >XP_023529813.1 trafficking protein particle complex subunit 2-like protein [Cucurbita pepo subsp. pepo] >KAG7015283.1 Trafficking protein particle complex subunit 2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 144
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]
BLAST of Sed0024195 vs. NCBI nr
Match: KAG6589019.1 (Transcription factor ABORTED MICROSPORES, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 603 MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 662

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 663 LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 722

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 144
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 723 ITSKTFAESVSTIVKSFGFSSAI 745

[Close]
BLAST of Sed0024195 vs. NCBI nr
Match: XP_004144858.1 (trafficking protein particle complex subunit 2-like protein [Cucumis sativus] >XP_008447943.1 PREDICTED: trafficking protein particle complex subunit 2-like protein [Cucumis melo] >XP_038887443.1 trafficking protein particle complex subunit 2-like protein [Benincasa hispida] >KGN43262.1 hypothetical protein Csa_020365 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 5.4e-74
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 144
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]
BLAST of Sed0024195 vs. NCBI nr
Match: XP_022136317.1 (trafficking protein particle complex subunit 2-like protein [Momordica charantia])

HSP 1 Score: 283.9 bits (725), Expect = 7.8e-73
Identity = 137/143 (95.80%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 144
           ITSKTF ESVSTIVKSFGFSSA+
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAV 143

[Close]
BLAST of Sed0024195 vs. NCBI nr
Match: XP_031127945.1 (trafficking protein particle complex subunit 2-like protein [Ipomoea triloba])

HSP 1 Score: 282.3 bits (721), Expect = 2.3e-72
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSA 143
           ITS+TF ESVSTIVKSFG SSA
Sbjct: 121 ITSRTFAESVSTIVKSFGLSSA 142

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BLAST of Sed0024195 vs. ExPASy Swiss-Prot
Match: Q54CU7 (Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum OX=44689 GN=trappc2l PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.4e-34
Identity = 68/139 (48.92%), Postives = 102/139 (73.38%), Query Frame = 0 

Query: 2   IVCVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETF 61
           IVCVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + +K     ++ +
Sbjct: 4   IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKK---LPSDMY 63

Query: 62  LGLLYPTENYKVYGYLTNTKVKFIMVTTDL-DVRDADVRNFFRRFHAAYVDAVSNPFHVP 121
           LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++ FF+R    +++  SNPF+ P
Sbjct: 64  LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFYKP 123

Query: 122 GKKITSKTFEESVSTIVKS 137
             K+ SK F + V+ +V S
Sbjct: 124 NSKVESKKFLQEVTNLVPS 139

[Close]
BLAST of Sed0024195 vs. ExPASy Swiss-Prot
Match: Q5M8X5 (Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicalis OX=8364 GN=trappc2l PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-32
Identity = 66/136 (48.53%), Postives = 99/136 (72.79%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VCVAV+  +N PLYI+S T  ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFEESVSTIV 135
             I S+ F+ +V++++
Sbjct: 121 DPIQSRAFDNTVTSMM 135

[Close]
BLAST of Sed0024195 vs. ExPASy Swiss-Prot
Match: B2RYU6 (Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus OX=10116 GN=Trappc2l PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.9e-32
Identity = 65/136 (47.79%), Postives = 100/136 (73.53%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VC+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFEESVSTIV 135
            +I S+ F+  V++++
Sbjct: 121 DRIQSRAFDTMVTSMM 135

[Close]
BLAST of Sed0024195 vs. ExPASy Swiss-Prot
Match: Q9JME7 (Trafficking protein particle complex subunit 2-like protein OS=Mus musculus OX=10090 GN=Trappc2l PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 9.0e-32
Identity = 65/136 (47.79%), Postives = 99/136 (72.79%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VC+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFEESVSTIV 135
            +I S+ F+  V++++
Sbjct: 121 DRIQSRAFDTMVTSMM 135

[Close]
BLAST of Sed0024195 vs. ExPASy Swiss-Prot
Match: A6H7F7 (Trafficking protein particle complex subunit 2-like protein OS=Bos taurus OX=9913 GN=TRAPPC2L PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-31
Identity = 65/136 (47.79%), Postives = 99/136 (72.79%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           M VCVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1   MAVCVAVIAKENYPLYIRSI-PTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMV--TTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPG 120
           LLYPTE+YKVYGY+TN+KVKF+MV  +++  +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 61  LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 120

Query: 121 KKITSKTFEESVSTIV 135
            +I S+ F+  V++++
Sbjct: 121 DRIQSRAFDGMVTSMM 135

[Close]
BLAST of Sed0024195 vs. ExPASy TrEMBL
Match: A0A6J1JPT4 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111486394 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 6.9e-75
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 144
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]
BLAST of Sed0024195 vs. ExPASy TrEMBL
Match: A0A6J1ERA2 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111435157 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 6.9e-75
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 144
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]
BLAST of Sed0024195 vs. ExPASy TrEMBL
Match: A0A0A0K4Q0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014480 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 144
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]
BLAST of Sed0024195 vs. ExPASy TrEMBL
Match: A0A1S3BJH9 (trafficking protein particle complex subunit 2-like protein OS=Cucumis melo OX=3656 GN=LOC103490277 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 144
           ITSKTF ESVSTIVKSFGFSSAI
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAI 143

[Close]
BLAST of Sed0024195 vs. ExPASy TrEMBL
Match: A0A6J1C584 (trafficking protein particle complex subunit 2-like protein OS=Momordica charantia OX=3673 GN=LOC111008034 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.8e-73
Identity = 137/143 (95.80%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDV++ERVNNPRKSGPTLNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVIEERVNNPRKSGPTLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+FFRRFHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTENYKVYGYLTNTKVKFIVVTTDLDVRDADVRSFFRRFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFSSAI 144
           ITSKTF ESVSTIVKSFGFSSA+
Sbjct: 121 ITSKTFAESVSTIVKSFGFSSAV 143

[Close]
BLAST of Sed0024195 vs. TAIR 10
Match: AT2G20930.1 (SNARE-like superfamily protein )

HSP 1 Score: 255.0 bits (650), Expect = 3.6e-68
Identity = 120/140 (85.71%), Postives = 132/140 (94.29%), Query Frame = 0 

Query: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60
           MIVCVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDV++ERVNNP+KSG TLNE FLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVIEERVNNPKKSGTTLNEAFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRNFFRRFHAAYVDAVSNPFHVPGKK 120
           LLYPT NYKVYGYLTNTKVKFI+VTTDLDVRD DVR+FFR+FHAAYVDAVSNPFHVPGKK
Sbjct: 61  LLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRSFFRKFHAAYVDAVSNPFHVPGKK 120

Query: 121 ITSKTFEESVSTIVKSFGFS 141
           ITS+TF ++VS IV S+G +
Sbjct: 121 ITSRTFAQTVSNIVGSYGLN 140

The following BLAST results are available for this feature:
BLAST of Sed0024195 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022928280.11.4e-7499.30trafficking protein particle complex subunit 2-like protein [Cucurbita moschata]... [more]
KAG6589019.11.4e-7499.30Transcription factor ABORTED MICROSPORES, partial [Cucurbita argyrosperma subsp.... [more]
XP_004144858.15.4e-7498.60trafficking protein particle complex subunit 2-like protein [Cucumis sativus] >X... [more]
XP_022136317.17.8e-7395.80trafficking protein particle complex subunit 2-like protein [Momordica charantia... [more]
XP_031127945.12.3e-7296.48trafficking protein particle complex subunit 2-like protein [Ipomoea triloba][more]
BLAST of Sed0024195 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q54CU77.4e-3448.92Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium dis... [more]
Q5M8X54.1e-3248.53Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicali... [more]
B2RYU66.9e-3247.79Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus... [more]
Q9JME79.0e-3247.79Trafficking protein particle complex subunit 2-like protein OS=Mus musculus OX=1... [more]
A6H7F72.6e-3147.79Trafficking protein particle complex subunit 2-like protein OS=Bos taurus OX=991... [more]
BLAST of Sed0024195 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JPT46.9e-7599.30Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1ERA26.9e-7599.30Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A0A0K4Q02.6e-7498.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014480 PE=4 SV=1[more]
A0A1S3BJH92.6e-7498.60trafficking protein particle complex subunit 2-like protein OS=Cucumis melo OX=3... [more]
A0A6J1C5843.8e-7395.80trafficking protein particle complex subunit 2-like protein OS=Momordica charant... [more]
BLAST of Sed0024195 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20930.13.6e-6885.71SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 17..137
e-value: 0.0044
score: -5.2
IPR006722Trafficking protein particle complex subunit 2PFAMPF04628Sedlin_Ncoord: 7..135
e-value: 2.4E-34
score: 118.3
IPR006722Trafficking protein particle complex subunit 2PANTHERPTHR12403TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2coord: 1..138
NoneNo IPR availableGENE3D3.30.450.70coord: 1..140
e-value: 1.7E-45
score: 156.0
NoneNo IPR availablePANTHERPTHR12403:SF26BNAA06G40850D PROTEINcoord: 1..138
IPR044760Trafficking protein particle complex subunit 2-likeCDDcd14854TRAPPC2Lcoord: 3..134
e-value: 4.58813E-69
score: 202.82
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 2..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024195.1Sed0024195.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005634 nucleus
cellular_component GO:0030008 TRAPP complex