Sed0024174 (gene) Chayote v1

Overview


Name	Sed0024174
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein of unknown function (DUF3511)
Location	LG10: 34096329 .. 34096940 (-)
RNA-Seq Expression	Sed0024174
Synteny	Sed0024174

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAGATCTTGCTGATCACTATCATGATCATTTTCCTTCAATCTCCACCGTCCATTTTCTCCATCTATTCTATATAAAAACCCTCCAATCAAAACCCAACTCCAAATTTAATTTGGTAGTGAGAAGAGAAGGAGAAAACAAGAGAAGCTACAAGCTATGGAGAAGAGCAAATCATTCCCCAAGTACTCGTCCTCGACTTCAGGCGAGTTCGGTTTCCAAACCCGATCAGCCTCGTACAATTTCAATGGCCCGACCGAGAAGGGGAGCGGGTTTTCGTCCTCGGCCGAGGCGGAGCTCCAGCGGAAGAGAAGAATTGCCTCTTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCCAGAGTAAAGAACAGCTTCAAGTGGATCAAAACCAAGTTTAGTGACAGTCGCTATGGTTTGTGAATTTATTAATAATTAAGGGGTTTTGTTTTTTTTTCTTCTTCTTCTATGTGTAAACAATTTGGCATTTACTGTCTCCAAAGACTTGGAACCAAATTGAAAATATGTTTGTGCTTGGCTGTGCTTTTGTTCCCCATGCAAATATATAAAACTTTGTTTAGAAAAAAAATTCAACTACCACAAATTTTAGTGTTA

mRNA sequence

ATCAGATCTTGCTGATCACTATCATGATCATTTTCCTTCAATCTCCACCGTCCATTTTCTCCATCTATTCTATATAAAAACCCTCCAATCAAAACCCAACTCCAAATTTAATTTGGTAGTGAGAAGAGAAGGAGAAAACAAGAGAAGCTACAAGCTATGGAGAAGAGCAAATCATTCCCCAAGTACTCGTCCTCGACTTCAGGCGAGTTCGGTTTCCAAACCCGATCAGCCTCGTACAATTTCAATGGCCCGACCGAGAAGGGGAGCGGGTTTTCGTCCTCGGCCGAGGCGGAGCTCCAGCGGAAGAGAAGAATTGCCTCTTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCCAGAGTAAAGAACAGCTTCAAGTGGATCAAAACCAAGTTTAGTGACAGTCGCTATGGTTTGTGAATTTATTAATAATTAAGGGGTTTTGTTTTTTTTTCTTCTTCTTCTATGTGTAAACAATTTGGCATTTACTGTCTCCAAAGACTTGGAACCAAATTGAAAATATGTTTGTGCTTGGCTGTGCTTTTGTTCCCCATGCAAATATATAAAACTTTGTTTAGAAAAAAAATTCAACTACCACAAATTTTAGTGTTA

Coding sequence (CDS)

ATGGAGAAGAGCAAATCATTCCCCAAGTACTCGTCCTCGACTTCAGGCGAGTTCGGTTTCCAAACCCGATCAGCCTCGTACAATTTCAATGGCCCGACCGAGAAGGGGAGCGGGTTTTCGTCCTCGGCCGAGGCGGAGCTCCAGCGGAAGAGAAGAATTGCCTCTTATAATGTTTTCAACATGGAAAACAAGGTCAAGTCCAGAGTAAAGAACAGCTTCAAGTGGATCAAAACCAAGTTTAGTGACAGTCGCTATGGTTTGTGA

Protein sequence

MEKSKSFPKYSSSTSGEFGFQTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNVFNMENKVKSRVKNSFKWIKTKFSDSRYGL

Homology

[Close]

BLAST of Sed0024174 vs. NCBI nr
Match: KGN45893.1 (hypothetical protein Csa_005289 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 8.2e-33
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRS SYNFNGPT K +GFS+SA+ ELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSRVKNSFKWIKTKFSDSRYGL 88
          MENKVKS VKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Sed0024174 vs. NCBI nr
Match: KAA0039168.1 (Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRS SYNFNGPT K +GFS+SA+ ELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSRVKNSFKWIKTKFSDSRYGL 88
          MENKVKS VKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Sed0024174 vs. NCBI nr
Match: KAG6607585.1 (hypothetical protein SDJN03_00927, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 77/87 (88.51%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNVFN 60
          MEKSK+FPKYSSSTSGEFGF+T+S SYNFNG  EKGSGFSSSA+ ELQRKRRIASYNVFN
Sbjct: 1  MEKSKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSRVKNSFKWIKTKFSDSRYGL 88
          MENKVKS VKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 87

[Close]

BLAST of Sed0024174 vs. NCBI nr
Match: KAG7037209.1 (hypothetical protein SDJN02_00832, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 9.0e-32
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNVFN 60
          MEK K+FPKYSSSTSGEFGF+T+S SYNFNG  EKGSGFSSSA+ ELQRKRRIASYNVFN
Sbjct: 1  MEKRKTFPKYSSSTSGEFGFETQSNSYNFNGSAEKGSGFSSSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSRVKNSFKWIKTKFSDSRYGL 88
          MENKVKS VKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDRRYGL 87

[Close]

BLAST of Sed0024174 vs. NCBI nr
Match: XP_022930185.1 (uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothetical protein SDJN03_14640, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025131.1 hypothetical protein SDJN02_13954, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.1 bits (362), Expect = 5.9e-31
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRS SYNFNGPT K +GFS+S + ELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSRVKNSFKWIKTKFSDSRYGL 88
          MENKVKS VKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Sed0024174 vs. ExPASy TrEMBL
Match: A0A0A0K8Y3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRS SYNFNGPT K +GFS+SA+ ELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSRVKNSFKWIKTKFSDSRYGL 88
          MENKVKS VKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Sed0024174 vs. ExPASy TrEMBL
Match: A0A5A7T8F8 (Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00710 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.2e-33
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNVFN 60
          MEKSKSFPKYSSSTSGEFGFQTRS SYNFNGPT K +GFS+SA+ ELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTGKATGFSTSADPELQRKRRIASYNVFN 60

Query: 61 MENKVKSRVKNSFKWIKTKFSDSRYGL 88
          MENKVKS VKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Sed0024174 vs. ExPASy TrEMBL
Match: A0A6J1EWA0 (uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC111436683 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.8e-31
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRS SYNFNGPT K +GFS+S + ELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFSFQTRSNSYNFNGPTTKATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSRVKNSFKWIKTKFSDSRYGL 88
          MENKVKS VKNSFKWIKTKFSD RYGL
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYGL 87

[Close]

BLAST of Sed0024174 vs. ExPASy TrEMBL
Match: A0A6J1ICY9 (uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-29
Identity = 73/87 (83.91%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNVFN 60
          MEKSKSFPKYSSS SGEF FQTRS SYNFNGPT   +GFS+S + ELQRKRRIASYNVFN
Sbjct: 1  MEKSKSFPKYSSSCSGEFTFQTRSNSYNFNGPTGTATGFSTSTDPELQRKRRIASYNVFN 60

Query: 61 MENKVKSRVKNSFKWIKTKFSDSRYGL 88
          MENKVKS VKNSFKWIKTKFSD RY L
Sbjct: 61 MENKVKSSVKNSFKWIKTKFSDIRYSL 87

[Close]

BLAST of Sed0024174 vs. ExPASy TrEMBL
Match: B9H7V5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G195800 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.5e-27
Identity = 64/87 (73.56%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MEKSKSFPKYSSSTSGEFGFQTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNVFN 60
          MEKSKSFP+YSSS SGEFGF+ RS SYNFNGP +KG+GF++S++ EL+RK+RIASYNVF 
Sbjct: 1  MEKSKSFPQYSSSFSGEFGFEDRSNSYNFNGPCQKGNGFATSSDPELKRKKRIASYNVFT 60

Query: 61 MENKVKSRVKNSFKWIKTKFSDSRYGL 88
          ME K+KS V+NSFKWIK+KFSD RYG+
Sbjct: 61 MEGKLKSNVRNSFKWIKSKFSDVRYGM 87

[Close]

BLAST of Sed0024174 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 75.1 bits (183), Expect = 3.1e-14
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MEKSKSFPKYSSS-TSGEFGF-QTRSASYNFNGPTEKGSGFSSSAEAELQRKRRIASYNV 60
          M+ SKS+ +YSSS ++ EFG+ Q RS SYNFNGP         + + E++RK+R+ASYN+
Sbjct: 2  MKGSKSYTEYSSSFSTDEFGYDQNRSNSYNFNGP-------CINTDPEMKRKKRVASYNL 61

Query: 61 FNMENKVKSRVKNSFKWIKTKFS 82
          F  E K+KS +KNSFKWIK KFS
Sbjct: 62 FATEEKLKSTLKNSFKWIKNKFS 77

[Close]

BLAST of Sed0024174 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 54.3 bits (129), Expect = 5.7e-08
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 2   EKSKSFP----------KYSSSTSGEFGFQT--RSASYNFNGPTE--KGSGFSSSAEAEL 61
           EKS+S P           YS+ST   +   T  R  S N +  +   K  GF    EAE+
Sbjct: 27  EKSESEPTNQQPPVMMRSYSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKKGFKGLCEAEI 86

Query: 62  QRKRRIASYNVFNMENKVKSRVKNSFKWIKTKFSDSRYGL 88
           QRK+R+ASYNV+ +E +VK  +K SFKW K   S++ YGL
Sbjct: 87  QRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYGL 126

[Close]

BLAST of Sed0024174 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 47.0 bits (110), Expect = 9.1e-06
Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 43  AEAELQRKRRIASYNVFNMENKVKSRVKNSFKWIKTK 80
           ++AE++RK+RIA Y  + +E KVKS +KN F+WIK K
Sbjct: 66  SDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNK 102

[Close]

BLAST of Sed0024174 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 47.0 bits (110), Expect = 9.1e-06
Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 10  YSSSTSGEFGFQTRSASYN------FNGPTEKGSGFSSS---AEAELQRKRRIASYNVFN 69
           Y  +  G+  F++ SASY       ++   EK    S S    + ELQRK+R+ASY ++ 
Sbjct: 20  YHGNQGGD--FRSYSASYGTRENNIYDVKKEKSIARSKSWGITDPELQRKKRVASYKMYG 79

Query: 70  MENKVKSRVKNSFKWIKTKFSDSRYG 87
           +E KVK   +NSF+W+K +++   YG
Sbjct: 80  VEGKVKGSFRNSFRWLKQRYTQVVYG 103

[Close]

BLAST of Sed0024174 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 45.4 bits (106), Expect = 2.6e-05
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 44  EAELQRKRRIASYNVFNMENKVKSRVKNSFKWIKTKFSDSRYG 87
           +AE +RK+RIA+Y  + +E KVKS VK  F WIK ++S   +G
Sbjct: 68  DAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

The following BLAST results are available for this feature:

BLAST of Sed0024174 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45893.1	8.2e-33	89.66	hypothetical protein Csa_005289 [Cucumis sativus]	[more]
KAA0039168.1	1.1e-32	89.66	Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa]	[more]
KAG6607585.1	2.4e-32	88.51	hypothetical protein SDJN03_00927, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037209.1	9.0e-32	87.36	hypothetical protein SDJN02_00832, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022930185.1	5.9e-31	86.21	uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothet...	[more]

BLAST of Sed0024174 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0024174 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8Y3	4.0e-33	89.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1	[more]
A0A5A7T8F8	5.2e-33	89.66	Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuw...	[more]
A0A6J1EWA0	2.8e-31	86.21	uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC1114366...	[more]
A0A6J1ICY9	1.6e-29	83.91	uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683...	[more]
B9H7V5	5.5e-27	73.56	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G195800 PE=4 ...	[more]

BLAST of Sed0024174 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09890.1	3.1e-14	54.22	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	5.7e-08	41.00	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	9.1e-06	54.05	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	9.1e-06	36.05	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	2.6e-05	48.84	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 44..86 e-value: 9.3E-20 score: 70.2
None	No IPR available	PANTHER	PTHR33193:SF7	OS06G0686600 PROTEIN	coord: 1..82
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024174.1	Sed0024174.1	mRNA