Sed0024116 (gene) Chayote v1

Overview


Name	Sed0024116
Type	gene
Organism	Sechium edule (Chayote v1)
Description	heterogeneous nuclear ribonucleoprotein 1
Location	LG08: 28736423 .. 28742536 (+)
RNA-Seq Expression	Sed0024116
Synteny	Sed0024116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTCTACCAACTTACTCAAAAAAAAAAGAAAAAAAAGAAAAAAAACTCTGAACTTACCCTTCCACCAAACCCGCCCTCAATGAATTAAGGGGGTTGTGGCCAAATCCGAATTCTTAATTCTAGGGTTTAAGAGGCGCCATTTTTTCGTACTTGGGAGCTGCGAAACCATCCAACATCACACACATGTCATCTAGGGCTTAGCCATTTACGTCGCTCACTTGTGTTTACACCCCCTCACTTCAAGCTCATTTGTTCATCGGAAAACTCCATGGATTCCAAGCCAAATGATGTTGCCACCAATGGCGAACCCGACGACTCCAAGCCCTCGAACCATAAAGATGATGTGAGTAGACTTGACCCTCCTTCTCATGGCGACGGTGCCAGTTCCGGGTAAGTGTATTACTCGAACCGAATCTCTTGAGTACTTTGTTGGGGGTTCTTTTTGTTTTCCGAGCATTAATGGAGTCTGTGATGAAATCGTGGAAGTGGGGTTCTCATGTTTGGTTTTATGTTTCTTGATCCGTGTTCTTGGATAATTGGGTGGTGCTGTAGAAAAATCTTCGTGGGAGGTTTACCGAGGGAAACTACTTCCGGTTAGTTTACTTTTTATTACTGTTTTGTGTTTTCTATGCCATTGTTTGTGTTGTTGGTTTTGTAACAATGGTTATTTGCAGCGCAATTTGTTAAACATTTTGGTGAATATGGCGAAATTATCGACTCTGTTATAATGAAGGACCGGAAGACCGGCCATCCTCGCGGATTCGGGTTTGTGACTTATGCTGATCACTCTGTGGTAGATAAAGTCATTGAGGACACACATATTATTAACGGGAAACAAGTAGGCTTGTATTTAGTGTGTTGATTTTTCGTTAGGCAGTAGGTTTCAATGATTTCAAGCTCAAACTTTGACTTAATTTCTAGGTGGAAATCAAGCGAACAATACCCAAAGGATCTTTTAGCTCTCGAGATTTCAAGACCAAGAAGATTTTTGTTGGTGGAATTCCTACATCTGTAGATGACGGTAACATATTGATTACACTGATGCTTGTTTAAATCTATGCGTCTGAGGTGTAGAGTACTCACTTCTATTAGTGTCAACTTTCAAGCAGATGAGTTCAGGGATTTTTTTACGCAATACGGTGAGGTTACGGAACACCAGATTATGCGTGACCACTCCACTAGCCGGTCCCGTGGATTTGGCTTTGTTACATTTGAGACAGAGCAGGCAGTTGATAATCTTTTGGCAAACGGAAACAGGCTTGAGTTAGCAGGCAGTCAGGTCAGCTGAGTTAAATCTAACATGTTCATTTTCTTTCTTTTGTAGAAAATGATTGTGTACACATGGATTTGGTTTCTATTTACCAATGCGCTAGGTTTCTATCATGGGTTCTTGTTTTTAATGAATTATTCTTTGTATCGATGCTGTATGAGCAATATATATAAAAATCCACTTGTGGTTGCATGGTTCTAGCATTAGTTTCTTGGAAATTGGATTTGGGATATGAACCCTTATTAACTAATATGATAATAAAGATAGGTTTGATTAGAAAAGTCTAAAGTTTTCATTAACATTCTGTACTTAGTTAGTACTAGTATGTCTTTATGGTTTTTTTTGGGGGAAAGAAACAATAGAATTTTTAGAGTTTCGTGGAGGATGTTTGATCCTTCATTAAATTCTATGTTTCTCTTTAGGACTCTTTCATTAGTTTTTCTTTTGTAATTTACTGTTATGCTTAATTTTTTTAGATTGAAGACCGTTCTTATAGAGGCTTCTCCCTTATTTTGTTTGGGATGTTTTTTGTTCTTTATATAATATTAATAATTTTCATATATTTAATTATTATTTTAATTATTGCAAAATTAACTTAAATTTCAATGTATTTCCAAAAAAAAAAATCGGTATGTTCAATTTTTTAAAATTAATTCTCAAAATTTTATTAAATAATTGTAGAGAAATATGTTTTTTAATAAATAAATAAAAATTAAATGAATTAACCATTTTAATCGACCGAATCGATCGACTTAACTGATTAGTTGGTTTTGGTGTCATTTTTAAGCAAATTACAGATTGGTATCGATGTCGATTTTCTCTGAAAACCGACATCGACCGACCGATGAGCACCCCTAGACATGACATTGTGGTGTTACAAATTTCTCATGGAAGTGCATTCTTATATAAGTACAAAAAATTGAACCTCTATCTATAACTTACCACATTTAAAGATAGAAACTTTAACTTTAAAGACAAGACTTACATGAAGTGAGAATGTTGAGGTTTTTCTTTGTGACAGAAACAAAACGTACGAAGAAGCTTACTATAAATAAAAAACTAAGTTAATTTAAAGAAAAACTCCAAATTCAACACTCCTCGAGTCTTGTCTTTGTGACAAGCCAACTATTGAGTAGAAACACAAATTTTCAGAACTTTTGTGTGAATGTTGTCAAATTCTTTAGAACTGCTAAAAATTAAGTTTGATTTTGCCTTTTTTCTCTTTCTTTCTATTTCTAGTTCAACGTGTTGTTAAGTATGTAAAAGATGAACCTCTCTCATCTCTCTCTTAACCTTCCTTCTCCCACCACTCCCCCACAACTGAAACCCTTCTCTGAAGGTTTTATACACCTTTACTGGCCGAAGAAAATGGAGCATAAATTCCCCCTATCTTCGATCATTAAAAGAATGACCTTCACTATTGAAATCCAAGTGTGTTATTGTGGAAGTAGAGCAAGAATCTCTAAAACAACCAAGGATAGAACCTTCTTTTTCTCCCTACATTGGTCGACTCTCCACTGGATAGTAAAGACCTTCTAATGACTTCTTGACCACCCCCTCTAAACTAGAAGTTTTTTTTCACAAACTTAATCTTTGACCACACGATTTGGATAGAGAAAGTCAGGAATAGGAGGGTTGTCATTGGTGAAGTAACCAAGACTTATAATAATGGTGAAATGAACAAAAGGTTTCCCCCATTGGCGAGTAAAAACATGGATGGAGAACCTTTCGGGCTTTATTGGTCGGACCTTCTCAATTTGATACCAATTTCAGTCCCACTATTAATTCTACATCTACTGGAGTAAGCACATTTAAAGCTGGCCACTTGGAAGCCCCACCCCATCCAACATAAAGACTAAAAAGTACCTCATAAAGTTTCTTATAGTCAAGCGCTTATCAAAGGAAAAATGTCGTTACCTGCTCCTACATGCATAAATAGATTGAATAAACAAAAGGTGGTTGGAAAACCAATGGAAATGAACTACAAGAAGGGGGTGGTTGCTGCGGGAAAAAAAAAGACTCACTATAGATTGAAGTTTGCCCAGGTTGTTTTGGATTACACTGACGGAGAATCCTCTCCTCGTCTCTTCGGCTTCAAAGTTATGCCATTGTGTATAGGATTTAGGAAGCACTTCCATGATGAATTGCACAAGATAGAAGCTTGTCTCTAGACCTTCCCATCCGAAGCAATGGAGATTCGCCCCTTTTTGGCGGAGAGAGCCATTCTGAGCTGTGCACAAAAAGACTGGTATAAAATTGGTGATTTCATCCTCAAATTCTCTCCATAGAGCATCACCAACCAATCTATCAATCCCACGATCCCATCTTATGGATGGGGGTTAGATTAGAGCCATTGGTAATGTGTAGATGACTTTTAGAGGCTGCGCAAAAAAACTCTGTTTTGAGGATTTATCAGAAGCCTGCTTAAATACTCGTGGTTTCATCCCACATGAATTTGGTTGACGACATACTCATCGACATCCATCAAGATATGTATTATCCCTATTTTGCTCAATTGTTTTTTGCATTGATTACTGAAGACGTGGCACCAACCGTTGGAAAAGTGATTAGAGAAGAGACAGTTTAATGGAGACGTTGCTCCCAAGCCTCCATAAACAGTTCAGACCCCCACAAACATTGCCCCTTTTTCGACTGTAGAAGATGGAGGTGTGAGTGACTCCTGAAGATGGAAGCTTCCCATTTTGTGGAACAAATTACAATTCCCATAGATTCTTGCATTGATATTATCTGGTCTAGCTCTGGTGCGAATGCACCAACATATCCCATCTTTCCTTCTTTTTTCAAGAAAACTCCTTCCTTTTCCTATGGGCCCATGATATGTGTAGGGAGAAAGTGTATGCACCTTTGATAATATTGACAGCCAATAGAGATAGAGAGGGATCATTTCACATGAAAAGTATACCCTCTTAAGAACCTTTTGCCTGCATGAAGGACCAACCAACGTCGTTTGAACTCCAGAGACATTTGATGGTAATTTTGTCCACAACTACTATCTTTGACTCTGGAAGAATAACTATGGTGATATTATGTTTGATAATGAAGTTTTTAACAAAGGCTCTTTTGTTGGGTTCTCCTAGACCCCTAACATTCCATGAGACAATAATGATATGATCCAATTAGTTAGTAATTGGTTAGGGTAGCTAGTTGGATGATCTTTTGGAAGGCTTTATTAGTGTAACCTACCTCTATTCTCAAAGATTGAGACTTTGATTTGATTTTTGCTTCCACAATATTTATTTCATCCTTCATTGTTTTTCCAATAATGTCAGTGCGTTAGATTTAAAGGGCTGGGATTTCATTTGAGAGTGAAAATTTTGTTTTTAAAAAAAAAAAAAATTGAATGTCTTCTATTTTGTGTTACCTCTCCACATTTTAATGATAAGAATGACCAATTTTGGATTGTTAAAATGCAATCCTATCACCAAAAAGGTTGGTGGCATGTTAGTTTGATTGTAATCCAATTCAACACCATAGTCATGGGTTCGATACTAAAAATCGGTATTGGACTCTAATCCTATTTGAGAGCAGTAGTACCAATGCAAGAGTGAAATAATAGATGAATATGCTTCTATTGAAATGGAAGAAATTGGTGATAGAAAATGTGGTAAATTTTGTTATAACAGCATAGTGTACTAAAACTGTGGTGTTACAATTCTAGTACATAAATATATTGTGTTACATTGTGGTGTTACAAACTTCTCATGGAAGTCCATCCTTGTATAAGTACAAAAAATTGAACCTATATCTATAACTTACCACATTTAAAATAGAAACTTAAACATTAAAACAAAACTTAACTGAAGTCAAATCTATATTTTAAAAAGAAACTTTAACTATAAATAAAAAACTCAAAATTAATTAAAAGAAAAAACTTAAAATTCAACACAATAGGAATGTAGATTATTTACTGAATTTATTCATCTGGTGAAGTCATTTGTAACAATTTAAGCTTGATGGTGTTTTTTGTTCTTAAAGGTTGAGATCAAGAAGGCAGAACCGAAAAAAGCAAATCCACCTCCAGCCCCTTCAAAAAGATACCATGATTCAAGGCCAAGTTACAGTGGTGGCTATGGGGATGCGTATGGGGAGTTTGGAGGTGGCGGATATGGTGGTGGTTTTAGGGAAGGTGGTTCATATGGTTCTAGAGGTGGTAGCTACGGTGGATATGGTGGAAACGATTTTAGTAGCTATGGAATGTATGGTCCTGGTGGAATGGGAGCTTACAGGGAAGACCCCTCTATGGGGTATTCTGCTCGTTATGGAGCAGGCTTTAGCAGAGGTTATGATTTTAGAGGTGGTTATGGTGGACCAGACGAGAGTTATGGTGCATATAACAGTGGTGGTGCTCCTAATACTGGTGGGTATGCAGGTAGCTATGATATGGGCATGGGTACTGGATACGCTGCTGGTGGCAGAGGCTCCTTCTATGGAAGTAGAGGAGGAGGAGGATATGATGTTGCAGGGAGCGCTCCAAGTGGTCGTTATCATCCTTATGGACGGTAGTAAGTAGCGATGGGAGCTTTTGTTAATTGATGTGTTACAAGGACGGCAATGCTGATCAGTTCCAGGTTCTCAAAATAACGATAAATATGTGTGCTTCTTACTGTCGCATGATTGCTGTCATGATCACCAGGATCACAATTTTCAGTCTTAAAATTTGACTGTACAATTGATCGACTAACTGCTTGAGAGTGTGCTATAATGATGTATCACCTATATATGCCATTAATTTTTCTATTTTGCTGTCAACTTTTAGTTGTTTTATTGACATAACTATTTTAAAGAATGTTCAATGAATTGGAATATTTCGGTTTCGTTTTA

mRNA sequence

CCCTTCTACCAACTTACTCAAAAAAAAAAGAAAAAAAAGAAAAAAAACTCTGAACTTACCCTTCCACCAAACCCGCCCTCAATGAATTAAGGGGGTTGTGGCCAAATCCGAATTCTTAATTCTAGGGTTTAAGAGGCGCCATTTTTTCGTACTTGGGAGCTGCGAAACCATCCAACATCACACACATGTCATCTAGGGCTTAGCCATTTACGTCGCTCACTTGTGTTTACACCCCCTCACTTCAAGCTCATTTGTTCATCGGAAAACTCCATGGATTCCAAGCCAAATGATGTTGCCACCAATGGCGAACCCGACGACTCCAAGCCCTCGAACCATAAAGATGATGTGAGTAGACTTGACCCTCCTTCTCATGGCGACGGTGCCAGTTCCGGAAAAATCTTCGTGGGAGGTTTACCGAGGGAAACTACTTCCGCGCAATTTGTTAAACATTTTGGTGAATATGGCGAAATTATCGACTCTGTTATAATGAAGGACCGGAAGACCGGCCATCCTCGCGGATTCGGGTTTGTGACTTATGCTGATCACTCTGTGGTAGATAAAGTCATTGAGGACACACATATTATTAACGGGAAACAAGTGGAAATCAAGCGAACAATACCCAAAGGATCTTTTAGCTCTCGAGATTTCAAGACCAAGAAGATTTTTGTTGGTGGAATTCCTACATCTGTAGATGACGATGAGTTCAGGGATTTTTTTACGCAATACGGTGAGGTTACGGAACACCAGATTATGCGTGACCACTCCACTAGCCGGTCCCGTGGATTTGGCTTTGTTACATTTGAGACAGAGCAGGCAGTTGATAATCTTTTGGCAAACGGAAACAGGCTTGAGTTAGCAGGCAGTCAGGTTGAGATCAAGAAGGCAGAACCGAAAAAAGCAAATCCACCTCCAGCCCCTTCAAAAAGATACCATGATTCAAGGCCAAGTTACAGTGGTGGCTATGGGGATGCGTATGGGGAGTTTGGAGGTGGCGGATATGGTGGTGGTTTTAGGGAAGGTGGTTCATATGGTTCTAGAGGTGGTAGCTACGGTGGATATGGTGGAAACGATTTTAGTAGCTATGGAATGTATGGTCCTGGTGGAATGGGAGCTTACAGGGAAGACCCCTCTATGGGGTATTCTGCTCGTTATGGAGCAGGCTTTAGCAGAGGTTATGATTTTAGAGGTGGTTATGGTGGACCAGACGAGAGTTATGGTGCATATAACAGTGGTGGTGCTCCTAATACTGGTGGGTATGCAGGTAGCTATGATATGGGCATGGGTACTGGATACGCTGCTGGTGGCAGAGGCTCCTTCTATGGAAGTAGAGGAGGAGGAGGATATGATGTTGCAGGGAGCGCTCCAAGTGGTCGTTATCATCCTTATGGACGGTAGTAAGTAGCGATGGGAGCTTTTGTTAATTGATGTGTTACAAGGACGGCAATGCTGATCAGTTCCAGGTTCTCAAAATAACGATAAATATGTGTGCTTCTTACTGTCGCATGATTGCTGTCATGATCACCAGGATCACAATTTTCAGTCTTAAAATTTGACTGTACAATTGATCGACTAACTGCTTGAGAGTGTGCTATAATGATGTATCACCTATATATGCCATTAATTTTTCTATTTTGCTGTCAACTTTTAGTTGTTTTATTGACATAACTATTTTAAAGAATGTTCAATGAATTGGAATATTTCGGTTTCGTTTTA

Coding sequence (CDS)

ATGGATTCCAAGCCAAATGATGTTGCCACCAATGGCGAACCCGACGACTCCAAGCCCTCGAACCATAAAGATGATGTGAGTAGACTTGACCCTCCTTCTCATGGCGACGGTGCCAGTTCCGGAAAAATCTTCGTGGGAGGTTTACCGAGGGAAACTACTTCCGCGCAATTTGTTAAACATTTTGGTGAATATGGCGAAATTATCGACTCTGTTATAATGAAGGACCGGAAGACCGGCCATCCTCGCGGATTCGGGTTTGTGACTTATGCTGATCACTCTGTGGTAGATAAAGTCATTGAGGACACACATATTATTAACGGGAAACAAGTGGAAATCAAGCGAACAATACCCAAAGGATCTTTTAGCTCTCGAGATTTCAAGACCAAGAAGATTTTTGTTGGTGGAATTCCTACATCTGTAGATGACGATGAGTTCAGGGATTTTTTTACGCAATACGGTGAGGTTACGGAACACCAGATTATGCGTGACCACTCCACTAGCCGGTCCCGTGGATTTGGCTTTGTTACATTTGAGACAGAGCAGGCAGTTGATAATCTTTTGGCAAACGGAAACAGGCTTGAGTTAGCAGGCAGTCAGGTTGAGATCAAGAAGGCAGAACCGAAAAAAGCAAATCCACCTCCAGCCCCTTCAAAAAGATACCATGATTCAAGGCCAAGTTACAGTGGTGGCTATGGGGATGCGTATGGGGAGTTTGGAGGTGGCGGATATGGTGGTGGTTTTAGGGAAGGTGGTTCATATGGTTCTAGAGGTGGTAGCTACGGTGGATATGGTGGAAACGATTTTAGTAGCTATGGAATGTATGGTCCTGGTGGAATGGGAGCTTACAGGGAAGACCCCTCTATGGGGTATTCTGCTCGTTATGGAGCAGGCTTTAGCAGAGGTTATGATTTTAGAGGTGGTTATGGTGGACCAGACGAGAGTTATGGTGCATATAACAGTGGTGGTGCTCCTAATACTGGTGGGTATGCAGGTAGCTATGATATGGGCATGGGTACTGGATACGCTGCTGGTGGCAGAGGCTCCTTCTATGGAAGTAGAGGAGGAGGAGGATATGATGTTGCAGGGAGCGCTCCAAGTGGTCGTTATCATCCTTATGGACGGTAG

Protein sequence

MDSKPNDVATNGEPDDSKPSNHKDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKHFGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGSFSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETEQAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDAYGEFGGGGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSRGGGGYDVAGSAPSGRYHPYGR

Homology

[Close]

BLAST of Sed0024116 vs. NCBI nr
Match: KGN59707.1 (hypothetical protein Csa_002190 [Cucumis sativus])

HSP 1 Score: 664.1 bits (1712), Expect = 7.2e-187
Identity = 344/378 (91.01%), Postives = 355/378 (93.92%), Query Frame = 0


Query: 1   MDSKPNDVATNGEPDDSKPSNHKDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKH 60
           MDSKPNDVATNGE +D+KP NHKDD SR DPPSHGDGAS+GKIFVGGLPRETTSAQFVKH
Sbjct: 6   MDSKPNDVATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSAQFVKH 65

Query: 61  FGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS 120
           FG+YGEI DSVIMKDRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIKRTIPKGS
Sbjct: 66  FGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS 125

Query: 121 FSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETE 180
            SSRDFKTKKIFVGGIPTSVD+DEFRDFF QYG V EHQIMRDHSTSRSRGFGF+TFETE
Sbjct: 126 SSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGVVKEHQIMRDHSTSRSRGFGFITFETE 185

Query: 181 QAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDAYGEFGG 240
           QAVD+LLANGNRLE+AGSQVEIKKAEPKKANPPPAPSKR+HDSRPSYSG YGDAYGEFGG
Sbjct: 186 QAVDDLLANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRFHDSRPSYSGAYGDAYGEFGG 245

Query: 241 GGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAYREDPSMGYSARYGAGFSR 300
           GGYGG FR GG YG+RGG YGGYGGNDFS YGMYG GGMGAYREDPSMGYSARYGA FSR
Sbjct: 246 GGYGGSFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGMGAYREDPSMGYSARYGASFSR 305

Query: 301 GYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSR----GGG 360
           GYDFRGGYGGPDESYGAYNSGGAP+TGGYAGSYDMGMGTGYAAGGRGSFYGSR    GGG
Sbjct: 306 GYDFRGGYGGPDESYGAYNSGGAPSTGGYAGSYDMGMGTGYAAGGRGSFYGSRGGGGGGG 365

Query: 361 GYDVAGSAPSGRYHPYGR 375
           GYD AGSAPSGRYHPYGR
Sbjct: 366 GYDGAGSAPSGRYHPYGR 383

[Close]

BLAST of Sed0024116 vs. NCBI nr
Match: XP_016903287.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo] >TYK18713.1 heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 656.4 bits (1692), Expect = 1.5e-184
Identity = 344/376 (91.49%), Postives = 353/376 (93.88%), Query Frame = 0


Query: 1   MDSKPNDVATNGEPDDSKPSNHKDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKH 60
           MDSKPNDVATNGE DD+KP NHKDD SR DPP HGDGAS+GKIFVGGLPRETTSAQFVKH
Sbjct: 6   MDSKPNDVATNGEHDDAKPLNHKDDGSRHDPPPHGDGASAGKIFVGGLPRETTSAQFVKH 65

Query: 61  FGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS 120
           FG+YGEI DSVIMKDRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIKRTIPKGS
Sbjct: 66  FGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS 125

Query: 121 FSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETE 180
            SSRDFKTKKIFVGGIPTSVD+DEFRDFF QYG V EHQIMRDHSTSRSRGFGF+TFETE
Sbjct: 126 SSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGVVKEHQIMRDHSTSRSRGFGFITFETE 185

Query: 181 QAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGY-GDAYGEFG 240
           QAVD+LLANGNRLE+AGSQVEIKKAEPKKANPPPAPSKRYH+SRPSYSG Y GDAYGEFG
Sbjct: 186 QAVDDLLANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRYHESRPSYSGAYGGDAYGEFG 245

Query: 241 GGGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAYREDPSMGYSARYGAGFS 300
           GGGYGG FR GG YG+RGG YGGYGGNDFS YGMYG GGMGAYREDPSMGYSARYGA FS
Sbjct: 246 GGGYGGSFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGMGAYREDPSMGYSARYGASFS 305

Query: 301 RGYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSR-GGGGY 360
           RGYDFRGGYGGPDESYGAYNSGGAPNTGGYA SYDMGMGTGYAAGGRGSFYGSR GGGGY
Sbjct: 306 RGYDFRGGYGGPDESYGAYNSGGAPNTGGYA-SYDMGMGTGYAAGGRGSFYGSRGGGGGY 365

Query: 361 DVAGSAPSGRYHPYGR 375
           D AGSAPSGRYHPYGR
Sbjct: 366 DGAGSAPSGRYHPYGR 380

[Close]

BLAST of Sed0024116 vs. NCBI nr
Match: XP_023528997.1 (LOW QUALITY PROTEIN: nuclear pore complex protein GP210 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 655.2 bits (1689), Expect = 3.4e-184
Identity = 341/383 (89.03%), Postives = 352/383 (91.91%), Query Frame = 0


Query: 1    MDSKPNDVATNGEPDDSKPSNHKDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKH 60
            MDSK ND ATNGE +D+KP NHKDD SR DPPSHGDGAS+GKIFVGGLPRETTSAQFVKH
Sbjct: 2010 MDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSAQFVKH 2069

Query: 61   FGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS 120
            FG+YGEI DSVIMKDRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIKRTIPKGS
Sbjct: 2070 FGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS 2129

Query: 121  FSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETE 180
             SSRDFKTKKIFVGGIPTSVD+DEFRDFF QYGEV EHQIMRDHSTSRSRGFGF+TFETE
Sbjct: 2130 SSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETE 2189

Query: 181  QAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDAYGEFGG 240
            QAVD+LLANGNRLELAGSQVEIKKAEPKKANPPP PSKRYHDSRPSYSG YGDAYGEFGG
Sbjct: 2190 QAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGDAYGEFGG 2249

Query: 241  GGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAYREDPSMGYSARYGAGFSR 300
            GGYGGGFR GG YG+RGG YGGYGGNDFS YGMYG GG+GAYREDPSMGYSARYGAGFSR
Sbjct: 2250 GGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSARYGAGFSR 2309

Query: 301  GYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSR------- 360
            GYDFRGGYGGPDESYGAYNS  APNTGGYAGSYDMG+GTGY +GGRGSFYGSR       
Sbjct: 2310 GYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSRGGGGGGG 2369

Query: 361  --GGGGYDVAGSAPSGRYHPYGR 375
              GGGGYD AGSAPSGRYHPYGR
Sbjct: 2370 GGGGGGYDGAGSAPSGRYHPYGR 2392

[Close]

BLAST of Sed0024116 vs. NCBI nr
Match: KAG6581052.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 654.8 bits (1688), Expect = 4.4e-184
Identity = 341/384 (88.80%), Postives = 352/384 (91.67%), Query Frame = 0


Query: 1   MDSKPNDVATNGEPDDSKPSNHKDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKH 60
           MDSK ND ATNGE +D+KP NHKDD SR DPPSHGDGAS+GKIFVGGLPRETTSAQFVKH
Sbjct: 6   MDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSAQFVKH 65

Query: 61  FGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS 120
           FG+YGEI DSVIMKDRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIKRTIPKGS
Sbjct: 66  FGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS 125

Query: 121 FSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETE 180
            SSRDFKTKKIFVGGIPTSVD+DEFRDFF QYGEV EHQIMRDHSTSRSRGFGF+TFETE
Sbjct: 126 SSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETE 185

Query: 181 QAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDAYGEFGG 240
           QAVD+LLANGNRLELAGSQVEIKKAEPKKANPPP PSKRYHDSRPSYSG YGDAYGEFGG
Sbjct: 186 QAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGDAYGEFGG 245

Query: 241 GGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAYREDPSMGYSARYGAGFSR 300
           GGYGGGFR GG YG+RGG YGGYGGNDFS YGMYG GG+GAYREDPSMGYSARYGAGFSR
Sbjct: 246 GGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSARYGAGFSR 305

Query: 301 GYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSR------- 360
           GYDFRGGYGGPDESYGAYNS  APNTGGYAGSYDMG+GTGY +GGRGSFYGSR       
Sbjct: 306 GYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSRGGGGGGG 365

Query: 361 ---GGGGYDVAGSAPSGRYHPYGR 375
              GGGGYD AGSAPSGRYHPYGR
Sbjct: 366 GGGGGGGYDGAGSAPSGRYHPYGR 389

[Close]

BLAST of Sed0024116 vs. NCBI nr
Match: XP_022934343.1 (heterogeneous nuclear ribonucleoprotein 1 [Cucurbita moschata])

HSP 1 Score: 654.4 bits (1687), Expect = 5.7e-184
Identity = 341/385 (88.57%), Postives = 352/385 (91.43%), Query Frame = 0


Query: 1   MDSKPNDVATNGEPDDSKPSNHKDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKH 60
           MDSK ND ATNGE +D+KP NHKDD SR DPPSHGDGAS+GKIFVGGLPRETTSAQFVKH
Sbjct: 6   MDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSAQFVKH 65

Query: 61  FGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS 120
           FG+YGEI DSVIMKDRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIKRTIPKGS
Sbjct: 66  FGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS 125

Query: 121 FSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETE 180
            SSRDFKTKKIFVGGIPTSVD+DEFRDFF QYGEV EHQIMRDHSTSRSRGFGF+TFETE
Sbjct: 126 SSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETE 185

Query: 181 QAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDAYGEFGG 240
           QAVD+LLANGNRLELAGSQVEIKKAEPKKANPPP PSKRYHDSRPSYSG YGDAYGEFGG
Sbjct: 186 QAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGDAYGEFGG 245

Query: 241 GGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAYREDPSMGYSARYGAGFSR 300
           GGYGGGFR GG YG+RGG YGGYGGNDFS YGMYG GG+GAYREDPSMGYSARYGAGFSR
Sbjct: 246 GGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSARYGAGFSR 305

Query: 301 GYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSR------- 360
           GYDFRGGYGGPDESYGAYNS  APNTGGYAGSYDMG+GTGY +GGRGSFYGSR       
Sbjct: 306 GYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSRGGGGGGG 365

Query: 361 ----GGGGYDVAGSAPSGRYHPYGR 375
               GGGGYD AGSAPSGRYHPYGR
Sbjct: 366 GGGGGGGGYDGAGSAPSGRYHPYGR 390

[Close]

BLAST of Sed0024116 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.1e-40
Identity = 138/376 (36.70%), Postives = 193/376 (51.33%), Query Frame = 0


Query: 38  ASSGKIFVGGLPRETTSAQFVKHFGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDK 97
           +  GK+FVGG+  ET   +  +HF  YGE+  +++M+D+ TG PRGFGFV ++D SV+D+
Sbjct: 3   SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62

Query: 98  VIEDTHIINGKQVEIKRTI----------------PKGSFSSRDFKTKKIFVGGIPTSVD 157
           V+++ H I+ ++V++KR +                 + S      KTKKIFVGG+P ++ 
Sbjct: 63  VLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122

Query: 158 DDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETEQAVDNLLANGNRLELAGSQVE 217
           D+EFR +F  YG VT+  IM D +T+R RGFGFV+F++E AVD++L +    +L+G QVE
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL-HKTFHDLSGKQVE 182

Query: 218 IKKAEPKKANP----------PPAPSKRYHDSRPSYSG-----------GYGDAYGEFGG 277
           +K+A PK ANP               + Y  +  SY G             G+    +G 
Sbjct: 183 VKRALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSYGS 242

Query: 278 GGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAY--REDPSMGYSARYGAGF 337
            GYG G+   GS G+  G+YGGY G    S G YG G    Y     P  GY +  G   
Sbjct: 243 SGYGAGY-GNGSNGAGYGAYGGYTG----SAGGYGAGATAGYGATNIPGAGYGSSTGVAP 302

Query: 338 SRGYD--FRGGYGGPDESYGAYNS-----GGAPNTGGYAGSYDMGMGTGYAAGGRGSFYG 368
              +D     GYG P    GA +S     G AP T   +G  + G G G   G  GS  G
Sbjct: 303 RNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGYGYG---GYSGSDSG 362

[Close]

BLAST of Sed0024116 vs. ExPASy Swiss-Prot
Match: Q8BG05 (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.2e-32
Identity = 130/337 (38.58%), Postives = 170/337 (50.45%), Query Frame = 0


Query: 42  KIFVGGLPRETTSAQFVKHFGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVI-E 101
           K+F+GGL  ETT     +HF ++G + D V+M+D +T   RGFGFVTY+    VD  +  
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95

Query: 102 DTHIINGKQVEIKRTIPKGSF--SSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEH 161
             H ++G+ VE KR + +            KKIFVGGI    ++   RD+F +YG++   
Sbjct: 96  RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155

Query: 162 QIMRDHSTSRSRGFGFVTFETEQAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSK 221
           ++M D  + + RGF FVTF+    VD ++       + G   E+KKA  K+     A S+
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYH-TINGHNCEVKKALSKQ-EMQSAGSQ 215

Query: 222 RYHDSRPSYSGGYGDAYGEFGGGGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGG 281
           R    R   SG +    G FGGG  GG F  GG++G RGG YGG GG    SYG    GG
Sbjct: 216 R---GRGGGSGNFMGRGGNFGGG--GGNFGRGGNFGGRGG-YGGGGGGSRGSYG----GG 275

Query: 282 MGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMG 341
            G Y  +   G    YG G   GY  RGGYGG    YG  N GG    GG  G YD    
Sbjct: 276 DGGY--NGFGGDGGNYGGG--PGYSSRGGYGGGGPGYG--NQGG--GYGGGGGGYD---- 335

Query: 342 TGYAAGGR--GSFYGSRGGGGYDVAGSAPSGRYHPYG 374
            GY  GG   G  YG  GGG Y+  G+    +   YG
Sbjct: 336 -GYNEGGNFGGGNYG--GGGNYNDFGNYSGQQQSNYG 345

[Close]

BLAST of Sed0024116 vs. ExPASy Swiss-Prot
Match: Q6URK4 (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus OX=10116 GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.2e-32
Identity = 130/337 (38.58%), Postives = 170/337 (50.45%), Query Frame = 0


Query: 42  KIFVGGLPRETTSAQFVKHFGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVI-E 101
           K+F+GGL  ETT     +HF ++G + D V+M+D +T   RGFGFVTY+    VD  +  
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95

Query: 102 DTHIINGKQVEIKRTIPKGSF--SSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEH 161
             H ++G+ VE KR + +            KKIFVGGI    ++   RD+F +YG++   
Sbjct: 96  RPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETI 155

Query: 162 QIMRDHSTSRSRGFGFVTFETEQAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSK 221
           ++M D  + + RGF FVTF+    VD ++       + G   E+KKA  K+     A S+
Sbjct: 156 EVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYH-TINGHNCEVKKALSKQ-EMQSAGSQ 215

Query: 222 RYHDSRPSYSGGYGDAYGEFGGGGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGG 281
           R    R   SG +    G FGGG  GG F  GG++G RGG YGG GG    SYG    GG
Sbjct: 216 R---GRGGGSGNFMGRGGNFGGG--GGNFGRGGNFGGRGG-YGGGGGGSRGSYG----GG 275

Query: 282 MGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMG 341
            G Y  +   G    YG G   GY  RGGYGG    YG  N GG    GG  G YD    
Sbjct: 276 DGGY--NGFGGDGGNYGGG--PGYSSRGGYGGGGPGYG--NQGG--GYGGGGGGYD---- 335

Query: 342 TGYAAGGR--GSFYGSRGGGGYDVAGSAPSGRYHPYG 374
            GY  GG   G  YG  GGG Y+  G+    +   YG
Sbjct: 336 -GYNEGGNFGGGNYG--GGGNYNDFGNYSGQQQSNYG 345

[Close]

BLAST of Sed0024116 vs. ExPASy Swiss-Prot
Match: P21522 (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana OX=7009 GN=HNRNP PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-31
Identity = 130/352 (36.93%), Postives = 169/352 (48.01%), Query Frame = 0


Query: 34  HGDGASSGKIFVGGLPRETTSAQFVKHFGEYGEIIDSVIMKDRKTGHPRGFGFVTYA-DH 93
           HG+     K+F+GGL   TT     +HF ++GEI+D V+MKD KT   RGFGF+TY+  H
Sbjct: 10  HGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAH 69

Query: 94  SVVDKVIEDTHIINGKQVEIKRTIPKGSFSSRD--FKTKKIFVGGIPTSVDDDEFRDFFT 153
            V D      H ++G+ VE KR +P+      +     KK+FVGGI   +++++ RD+F 
Sbjct: 70  MVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFK 129

Query: 154 QYGEVTEHQIMRDHSTSRSRGFGFVTFETEQAVDNLLANGNRLELAGSQVEIKKAEPKKA 213
           QYG V    I+ D  T + RGF FV F+    VD +  + N  ++ G  +++KKA PK  
Sbjct: 130 QYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNH-QIRGKHIDVKKALPK-- 189

Query: 214 NPPPAPSKRYHDSRPSYSGGYGDAYGEFGGGGYGGGFREGGSYGSRGGS----YGGYGGN 273
               AP  R    R    GG G  +G  GG G  GG   GG  G  GG+     G  GG 
Sbjct: 190 --GDAPGGRGGGGRGGVGGGAGGGWG--GGRGDWGGSAGGGGGGGWGGADPWENGRGGGG 249

Query: 274 DFSSYGMYGPGGMGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNT 333
           D    G  G GG   +     MG   RYG G  R     GG+     S   YNSG  P +
Sbjct: 250 DRWGGGGGGMGGGDRWGGGGGMGGGDRYGGGGGRS----GGW-----SNDGYNSG--PQS 309

Query: 334 GGYAGSYDMGMGTGYAAGGRG---------SFYGSRGGGGYDVAGSAPSGRY 370
            G+ G Y    G G   G  G         S  GSRGGGG    GS    RY
Sbjct: 310 DGFGGGYKQSYGGGAVRGSSGYGGSRSAPYSDRGSRGGGGGGY-GSGGGRRY 342

[Close]

BLAST of Sed0024116 vs. ExPASy Swiss-Prot
Match: P09651 (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 138.3 bits (347), Expect = 1.8e-31
Identity = 127/340 (37.35%), Postives = 172/340 (50.59%), Query Frame = 0


Query: 42  KIFVGGLPRETTSAQFVKHFGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIE- 101
           K+F+GGL  ETT      HF ++G + D V+M+D  T   RGFGFVTYA    VD  +  
Sbjct: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74

Query: 102 DTHIINGKQVEIKRTIPK--GSFSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEH 161
             H ++G+ VE KR + +            KKIFVGGI    ++   RD+F QYG++   
Sbjct: 75  RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134

Query: 162 QIMRDHSTSRSRGFGFVTFETEQAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSK 221
           +IM D  + + RGF FVTF+   +VD ++       + G   E++KA  K+     + S+
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH-TVNGHNCEVRKALSKQEMASASSSQ 194

Query: 222 RYHDSRPSYSGGYGDAYGEFGGGGYGGGFR-EGGSYGSRGGSYGGYGG-----NDFSSYG 281
           R      ++ GG G  +G     G GG F   GG  GSRGG  GGYGG     N F + G
Sbjct: 195 RGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG--GGYGGSGDGYNGFGNDG 254

Query: 282 MYGPGGMGAYREDPSMGYSARYGAGFSRGYDFRG-GYGGPDESYGAYNSGGAPNTGGYAG 341
            YG GG G        G S  YG+G  +GY  +G GYGG   SY +YN+GG    GG +G
Sbjct: 255 GYGGGGPG------YSGGSRGYGSG-GQGYGNQGSGYGG-SGSYDSYNNGGGGGFGGGSG 314

Query: 342 SYDMGMGTGYAAGG----RGSFYGSRGGGGYDVAGSAPSG 368
           S + G G  Y   G    + S +G   GG +    S P G
Sbjct: 315 S-NFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYG 342

[Close]

BLAST of Sed0024116 vs. ExPASy TrEMBL
Match: A0A0A0LG75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G839850 PE=4 SV=1)

HSP 1 Score: 664.1 bits (1712), Expect = 3.5e-187
Identity = 344/378 (91.01%), Postives = 355/378 (93.92%), Query Frame = 0


Query: 1   MDSKPNDVATNGEPDDSKPSNHKDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKH 60
           MDSKPNDVATNGE +D+KP NHKDD SR DPPSHGDGAS+GKIFVGGLPRETTSAQFVKH
Sbjct: 6   MDSKPNDVATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSAQFVKH 65

Query: 61  FGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS 120
           FG+YGEI DSVIMKDRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIKRTIPKGS
Sbjct: 66  FGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS 125

Query: 121 FSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETE 180
            SSRDFKTKKIFVGGIPTSVD+DEFRDFF QYG V EHQIMRDHSTSRSRGFGF+TFETE
Sbjct: 126 SSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGVVKEHQIMRDHSTSRSRGFGFITFETE 185

Query: 181 QAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDAYGEFGG 240
           QAVD+LLANGNRLE+AGSQVEIKKAEPKKANPPPAPSKR+HDSRPSYSG YGDAYGEFGG
Sbjct: 186 QAVDDLLANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRFHDSRPSYSGAYGDAYGEFGG 245

Query: 241 GGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAYREDPSMGYSARYGAGFSR 300
           GGYGG FR GG YG+RGG YGGYGGNDFS YGMYG GGMGAYREDPSMGYSARYGA FSR
Sbjct: 246 GGYGGSFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGMGAYREDPSMGYSARYGASFSR 305

Query: 301 GYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSR----GGG 360
           GYDFRGGYGGPDESYGAYNSGGAP+TGGYAGSYDMGMGTGYAAGGRGSFYGSR    GGG
Sbjct: 306 GYDFRGGYGGPDESYGAYNSGGAPSTGGYAGSYDMGMGTGYAAGGRGSFYGSRGGGGGGG 365

Query: 361 GYDVAGSAPSGRYHPYGR 375
           GYD AGSAPSGRYHPYGR
Sbjct: 366 GYDGAGSAPSGRYHPYGR 383

[Close]

BLAST of Sed0024116 vs. ExPASy TrEMBL
Match: A0A5D3D587 (Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00140 PE=4 SV=1)

HSP 1 Score: 656.4 bits (1692), Expect = 7.3e-185
Identity = 344/376 (91.49%), Postives = 353/376 (93.88%), Query Frame = 0


Query: 1   MDSKPNDVATNGEPDDSKPSNHKDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKH 60
           MDSKPNDVATNGE DD+KP NHKDD SR DPP HGDGAS+GKIFVGGLPRETTSAQFVKH
Sbjct: 6   MDSKPNDVATNGEHDDAKPLNHKDDGSRHDPPPHGDGASAGKIFVGGLPRETTSAQFVKH 65

Query: 61  FGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS 120
           FG+YGEI DSVIMKDRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIKRTIPKGS
Sbjct: 66  FGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS 125

Query: 121 FSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETE 180
            SSRDFKTKKIFVGGIPTSVD+DEFRDFF QYG V EHQIMRDHSTSRSRGFGF+TFETE
Sbjct: 126 SSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGVVKEHQIMRDHSTSRSRGFGFITFETE 185

Query: 181 QAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGY-GDAYGEFG 240
           QAVD+LLANGNRLE+AGSQVEIKKAEPKKANPPPAPSKRYH+SRPSYSG Y GDAYGEFG
Sbjct: 186 QAVDDLLANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRYHESRPSYSGAYGGDAYGEFG 245

Query: 241 GGGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAYREDPSMGYSARYGAGFS 300
           GGGYGG FR GG YG+RGG YGGYGGNDFS YGMYG GGMGAYREDPSMGYSARYGA FS
Sbjct: 246 GGGYGGSFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGMGAYREDPSMGYSARYGASFS 305

Query: 301 RGYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSR-GGGGY 360
           RGYDFRGGYGGPDESYGAYNSGGAPNTGGYA SYDMGMGTGYAAGGRGSFYGSR GGGGY
Sbjct: 306 RGYDFRGGYGGPDESYGAYNSGGAPNTGGYA-SYDMGMGTGYAAGGRGSFYGSRGGGGGY 365

Query: 361 DVAGSAPSGRYHPYGR 375
           D AGSAPSGRYHPYGR
Sbjct: 366 DGAGSAPSGRYHPYGR 380

[Close]

BLAST of Sed0024116 vs. ExPASy TrEMBL
Match: A0A1S4E4Y8 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC107992116 PE=4 SV=1)

HSP 1 Score: 656.4 bits (1692), Expect = 7.3e-185
Identity = 344/376 (91.49%), Postives = 353/376 (93.88%), Query Frame = 0


Query: 1   MDSKPNDVATNGEPDDSKPSNHKDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKH 60
           MDSKPNDVATNGE DD+KP NHKDD SR DPP HGDGAS+GKIFVGGLPRETTSAQFVKH
Sbjct: 6   MDSKPNDVATNGEHDDAKPLNHKDDGSRHDPPPHGDGASAGKIFVGGLPRETTSAQFVKH 65

Query: 61  FGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS 120
           FG+YGEI DSVIMKDRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIKRTIPKGS
Sbjct: 66  FGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS 125

Query: 121 FSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETE 180
            SSRDFKTKKIFVGGIPTSVD+DEFRDFF QYG V EHQIMRDHSTSRSRGFGF+TFETE
Sbjct: 126 SSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGVVKEHQIMRDHSTSRSRGFGFITFETE 185

Query: 181 QAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGY-GDAYGEFG 240
           QAVD+LLANGNRLE+AGSQVEIKKAEPKKANPPPAPSKRYH+SRPSYSG Y GDAYGEFG
Sbjct: 186 QAVDDLLANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRYHESRPSYSGAYGGDAYGEFG 245

Query: 241 GGGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAYREDPSMGYSARYGAGFS 300
           GGGYGG FR GG YG+RGG YGGYGGNDFS YGMYG GGMGAYREDPSMGYSARYGA FS
Sbjct: 246 GGGYGGSFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGMGAYREDPSMGYSARYGASFS 305

Query: 301 RGYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSR-GGGGY 360
           RGYDFRGGYGGPDESYGAYNSGGAPNTGGYA SYDMGMGTGYAAGGRGSFYGSR GGGGY
Sbjct: 306 RGYDFRGGYGGPDESYGAYNSGGAPNTGGYA-SYDMGMGTGYAAGGRGSFYGSRGGGGGY 365

Query: 361 DVAGSAPSGRYHPYGR 375
           D AGSAPSGRYHPYGR
Sbjct: 366 DGAGSAPSGRYHPYGR 380

[Close]

BLAST of Sed0024116 vs. ExPASy TrEMBL
Match: A0A6J1F7E2 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita moschata OX=3662 GN=LOC111441536 PE=4 SV=1)

HSP 1 Score: 654.4 bits (1687), Expect = 2.8e-184
Identity = 341/385 (88.57%), Postives = 352/385 (91.43%), Query Frame = 0


Query: 1   MDSKPNDVATNGEPDDSKPSNHKDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKH 60
           MDSK ND ATNGE +D+KP NHKDD SR DPPSHGDGAS+GKIFVGGLPRETTSAQFVKH
Sbjct: 6   MDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSAQFVKH 65

Query: 61  FGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS 120
           FG+YGEI DSVIMKDRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIKRTIPKGS
Sbjct: 66  FGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS 125

Query: 121 FSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETE 180
            SSRDFKTKKIFVGGIPTSVD+DEFRDFF QYGEV EHQIMRDHSTSRSRGFGF+TFETE
Sbjct: 126 SSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETE 185

Query: 181 QAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDAYGEFGG 240
           QAVD+LLANGNRLELAGSQVEIKKAEPKKANPPP PSKRYHDSRPSYSG YGDAYGEFGG
Sbjct: 186 QAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGDAYGEFGG 245

Query: 241 GGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAYREDPSMGYSARYGAGFSR 300
           GGYGGGFR GG YG+RGG YGGYGGNDFS YGMYG GG+GAYREDPSMGYSARYGAGFSR
Sbjct: 246 GGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSARYGAGFSR 305

Query: 301 GYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSR------- 360
           GYDFRGGYGGPDESYGAYNS  APNTGGYAGSYDMG+GTGY +GGRGSFYGSR       
Sbjct: 306 GYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSRGGGGGGG 365

Query: 361 ----GGGGYDVAGSAPSGRYHPYGR 375
               GGGGYD AGSAPSGRYHPYGR
Sbjct: 366 GGGGGGGGYDGAGSAPSGRYHPYGR 390

[Close]

BLAST of Sed0024116 vs. ExPASy TrEMBL
Match: A0A6J1J2Y6 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita maxima OX=3661 GN=LOC111481383 PE=4 SV=1)

HSP 1 Score: 654.1 bits (1686), Expect = 3.6e-184
Identity = 340/383 (88.77%), Postives = 352/383 (91.91%), Query Frame = 0


Query: 1   MDSKPNDVATNGEPDDSKPSNHKDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKH 60
           MDSK ND ATNGE +D+KP NHKDD SR DPPSHGDGAS+GKIFVGGLPRETTSAQFVKH
Sbjct: 6   MDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSAQFVKH 65

Query: 61  FGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS 120
           FG+YGEI DSVIMKDRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIKRTIPKGS
Sbjct: 66  FGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS 125

Query: 121 FSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETE 180
            SSRDFKTKKIFVGGIPTSVD+DEFRDFF QYGEV EHQIMRDHSTSRSRGFGF+TFETE
Sbjct: 126 SSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETE 185

Query: 181 QAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDAYGEFGG 240
           QAVD+LLANGNRLELAGSQVEIKKAEPKK+NPPP PSKRYHDSRPSYSG YGDAYGEFGG
Sbjct: 186 QAVDDLLANGNRLELAGSQVEIKKAEPKKSNPPPPPSKRYHDSRPSYSGTYGDAYGEFGG 245

Query: 241 GGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAYREDPSMGYSARYGAGFSR 300
           GGYGGGFR GG YG+RGG YGGYGGNDFS YGMYG GG+GAYREDPSMGYSARYGAGFSR
Sbjct: 246 GGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSARYGAGFSR 305

Query: 301 GYDFRGGYGGPDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSR------- 360
           GYDFRGGYGGPDESYGAYNS  APNTGGYAGSYDMG+GTGY +GGRGSFYGSR       
Sbjct: 306 GYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSRGGGGGGG 365

Query: 361 --GGGGYDVAGSAPSGRYHPYGR 375
             GGGGYD AGSAPSGRYHPYGR
Sbjct: 366 GGGGGGYDGAGSAPSGRYHPYGR 388

[Close]

BLAST of Sed0024116 vs. TAIR 10
Match: AT5G40490.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 384.8 bits (987), Expect = 7.9e-107
Identity = 247/426 (57.98%), Postives = 279/426 (65.49%), Query Frame = 0


Query: 1   MDSKPNDVATNGEPDDSKPSNH-KDDVSRLDPPSHGDGASSGKIFVGGLPRETTSAQFVK 60
           MD    +     E  D KPS   +DD  +  P S G   S+GKIFVGGL RETTSA+F+K
Sbjct: 1   MDPYGTETVIEDEIHDPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLK 60

Query: 61  HFGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKG 120
           HFG+YGEI DSVIMKDRKTG PRGFGFVTYAD SVVDKVI+D HII GKQVEIKRTIP+G
Sbjct: 61  HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRG 120

Query: 121 SFSSRDFKTKKIFVGGIPTSVDDDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFET 180
           S SS DFKTKKIFVGGIP+SVDDDEF++FF Q+GE+ EHQIMRDHST RSRGFGFVT+E+
Sbjct: 121 SMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYES 180

Query: 181 EQAVDNLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDAYGEFG 240
           E  VD+LLA GNR+EL+G+QVEIKKAEPKK N    PSKR+ DSR ++ GGYGD YG   
Sbjct: 181 EDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGGGYGDGYGGGH 240

Query: 241 GGGY---GGGFREGGSY-GSRGGSYGGYGGNDFSSYGMYG-PGGMGAYREDPSMGYSARY 300
           GGGY   GG ++ GG Y G R G YGGYGG +F  YG  G  GG+G YR +P++GYS RY
Sbjct: 241 GGGYGGPGGPYKSGGGYGGGRSGGYGGYGG-EFGGYGGGGYGGGVGPYRGEPALGYSGRY 300

Query: 301 ---GAGFSR-GYDF---------------------RGGYGGPDESY---------GAYNS 360
              G G++R GY                        GGYGGP  SY         G Y  
Sbjct: 301 GGGGGGYNRGGYSMGGGGGYGGGPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGIGGYGG 360

Query: 361 G-GAPNTGGY--AGSYDM---------GMGTGYAAGGRGSFYGSRGGGGYDVAGSAPSGR 375
           G G    GGY   G YDM         G G G    G GSFYG  GGGG    G   SGR
Sbjct: 361 GMGGAGGGGYRGGGGYDMGGVGGGGAGGYGAGGGGNGGGSFYG--GGGGRGGYGGGGSGR 420

[Close]

BLAST of Sed0024116 vs. TAIR 10
Match: AT3G13224.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 299.7 bits (766), Expect = 3.3e-81
Identity = 197/364 (54.12%), Postives = 236/364 (64.84%), Query Frame = 0


Query: 27  SRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKHFGEYGEIIDSVIMKDRKTGHPRGFGF 86
           SR D    GDGAS GKIF+GGL ++TT+  F KHFG+YGEI DSVIM+DR TG PRGFGF
Sbjct: 5   SRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGF 64

Query: 87  VTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS--FSSRDFKTKKIFVGGIPTSVDDDE 146
           +T+AD SVVDKVIEDTH+INGKQVEIKRTIPKG+    S+D KTKKIFVGGIP++V +DE
Sbjct: 65  ITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDE 124

Query: 147 FRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETEQAVDNLLANGNRLELAGSQVEIKK 206
            +DFF +YG V EHQ++RDH T+RSRGFGFV F++E+ VD LL+ GN +++A +QVEIKK
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKK 184

Query: 207 AEPKKANPPPAPSKRYHDSRPSYSGGYGDAYGEFGG--GGYG---GGFREGGSYGSRGGS 266
           AEPKK+     PS   H    S +  Y    G +GG  GGYG   G  R  G   SR   
Sbjct: 185 AEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAG 244

Query: 267 YGGYG----GNDF-SSYGMYGPGGMGAYREDPSMGYSAR---YGAGF-SRGYDFRGGYGG 326
             GYG    G +F   Y  YG G +G YR +P +GYS+R   YG+GF   GY  RGG G 
Sbjct: 245 GYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGGEGYG-RGGEG- 304

Query: 327 PDESYGAYNSGGAPNTGGYAGSYDMGMGTGYAAGGRGSFYGSRGGGGYDVAGSAPSGRYH 375
              +Y  Y  GG    GGY G    G G  Y +GG G  Y   G GG    G + S RYH
Sbjct: 305 ---AYLGYPRGGGEGYGGYGGP---GYGGAYESGGPGGSY--EGAGGPYGRGYSSSSRYH 358

[Close]

BLAST of Sed0024116 vs. TAIR 10
Match: AT3G13224.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 249.6 bits (636), Expect = 4.0e-66
Identity = 119/180 (66.11%), Postives = 147/180 (81.67%), Query Frame = 0


Query: 27  SRLDPPSHGDGASSGKIFVGGLPRETTSAQFVKHFGEYGEIIDSVIMKDRKTGHPRGFGF 86
           SR D    GDGAS GKIF+GGL ++TT+  F KHFG+YGEI DSVIM+DR TG PRGFGF
Sbjct: 5   SRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGF 64

Query: 87  VTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS--FSSRDFKTKKIFVGGIPTSVDDDE 146
           +T+AD SVVDKVIEDTH+INGKQVEIKRTIPKG+    S+D KTKKIFVGGIP++V +DE
Sbjct: 65  ITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDE 124

Query: 147 FRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETEQAVDNLLANGNRLELAGSQVEIKK 205
            +DFF +YG V EHQ++RDH T+RSRGFGFV F++E+ VD LL+ GN +++A +QV + K
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVSLYK 184

[Close]

BLAST of Sed0024116 vs. TAIR 10
Match: AT1G17640.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 211.1 bits (536), Expect = 1.6e-54
Identity = 146/345 (42.32%), Postives = 199/345 (57.68%), Query Frame = 0


Query: 38  ASSGKIFVGGLPRETTSAQFVKHFGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDK 97
           +S GK+FVGG+  ETT+  F  +FG++GE++DSVIM DR TG+PRGFGFVT+AD +V +K
Sbjct: 63  SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122

Query: 98  VIEDTHIINGKQVEIKRTIPKGSFSS---RDFKTKKIFVGGIPTSVDDDEFRDFFTQYGE 157
           V+E+ H+I+ ++V++KRT+P+G   +      KT+KIFVGG+P  +++DE +++F  YG+
Sbjct: 123 VLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGD 182

Query: 158 VTEHQIMRDHSTSRSRGFGFVTFETEQAVDNLLANGNRLELAGSQVEIKKAEPKKANPPP 217
           + EHQIM DH T RSRGFGFVTF+TE +VD L ++G   EL   QVEIK+AEPK+     
Sbjct: 183 IIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDN 242

Query: 218 A----PSKRYHDSRPSYSGGYGDAYGEFGG-GGYGGGFREGGSYGSRGGSYGGYGGNDF- 277
           +     +   +D   SYSG   + Y  + G GGYGG              YG Y GN   
Sbjct: 243 SFRSYGASGKYDQEDSYSGKANEDYSMYSGYGGYGG--------------YGAYAGNSMV 302

Query: 278 SSYGMYGPGGMGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNTG- 337
           +  G YG                  YG G+  GY    GYGG   + G Y +GG  + G 
Sbjct: 303 NPAGFYG------------------YGGGYGYGY----GYGGQMFNMG-YGAGGYSHMGS 362

Query: 338 GYAGSYDMGMGTGYAAGGRGSFYGSRGGGGYDVAGSAPSGRYHPY 373
           GY  +     G G + G   +  GS  G G    GS P  RYHPY
Sbjct: 363 GYGVAAAAAYGGGKSHGNGNN--GSSSGKGNGTNGSGPD-RYHPY 367

[Close]

BLAST of Sed0024116 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 166.0 bits (419), Expect = 5.8e-41
Identity = 138/376 (36.70%), Postives = 193/376 (51.33%), Query Frame = 0


Query: 38  ASSGKIFVGGLPRETTSAQFVKHFGEYGEIIDSVIMKDRKTGHPRGFGFVTYADHSVVDK 97
           +  GK+FVGG+  ET   +  +HF  YGE+  +++M+D+ TG PRGFGFV ++D SV+D+
Sbjct: 3   SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62

Query: 98  VIEDTHIINGKQVEIKRTI----------------PKGSFSSRDFKTKKIFVGGIPTSVD 157
           V+++ H I+ ++V++KR +                 + S      KTKKIFVGG+P ++ 
Sbjct: 63  VLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122

Query: 158 DDEFRDFFTQYGEVTEHQIMRDHSTSRSRGFGFVTFETEQAVDNLLANGNRLELAGSQVE 217
           D+EFR +F  YG VT+  IM D +T+R RGFGFV+F++E AVD++L +    +L+G QVE
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL-HKTFHDLSGKQVE 182

Query: 218 IKKAEPKKANP----------PPAPSKRYHDSRPSYSG-----------GYGDAYGEFGG 277
           +K+A PK ANP               + Y  +  SY G             G+    +G 
Sbjct: 183 VKRALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSYGS 242

Query: 278 GGYGGGFREGGSYGSRGGSYGGYGGNDFSSYGMYGPGGMGAY--REDPSMGYSARYGAGF 337
            GYG G+   GS G+  G+YGGY G    S G YG G    Y     P  GY +  G   
Sbjct: 243 SGYGAGY-GNGSNGAGYGAYGGYTG----SAGGYGAGATAGYGATNIPGAGYGSSTGVAP 302

Query: 338 SRGYD--FRGGYGGPDESYGAYNS-----GGAPNTGGYAGSYDMGMGTGYAAGGRGSFYG 368
              +D     GYG P    GA +S     G AP T   +G  + G G G   G  GS  G
Sbjct: 303 RNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGYGYG---GYSGSDSG 362

The following BLAST results are available for this feature:

BLAST of Sed0024116 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59707.1	7.2e-187	91.01	hypothetical protein Csa_002190 [Cucumis sativus]	[more]
XP_016903287.1	1.5e-184	91.49	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo] >TYK18713.1 ...	[more]
XP_023528997.1	3.4e-184	89.03	LOW QUALITY PROTEIN: nuclear pore complex protein GP210 [Cucurbita pepo subsp. p...	[more]
KAG6581052.1	4.4e-184	88.80	Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp...	[more]
XP_022934343.1	5.7e-184	88.57	heterogeneous nuclear ribonucleoprotein 1 [Cucurbita moschata]	[more]

BLAST of Sed0024116 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W034	8.1e-40	36.70	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
Q8BG05	6.2e-32	38.58	Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 P...	[more]
Q6URK4	6.2e-32	38.58	Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus OX=10116 GN=Hnrn...	[more]
P21522	1.1e-31	36.93	Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americ...	[more]
P09651	1.8e-31	37.35	Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1 PE...	[more]

BLAST of Sed0024116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG75	3.5e-187	91.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G839850 PE=4 SV=1	[more]
A0A5D3D587	7.3e-185	91.49	Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S4E4Y8	7.3e-185	91.49	heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10799211...	[more]
A0A6J1F7E2	2.8e-184	88.57	heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1J2Y6	3.6e-184	88.77	heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of Sed0024116 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40490.1	7.9e-107	57.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13224.2	3.3e-81	54.12	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13224.1	4.0e-66	66.11	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17640.1	1.6e-54	42.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	5.8e-41	36.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 20..91 e-value: 2.9E-21 score: 86.6 coord: 108..181 e-value: 1.8E-21 score: 87.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 109..178 e-value: 1.8E-16 score: 59.8 coord: 21..88 e-value: 1.5E-15 score: 56.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 107..185 score: 19.280163
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 19..95 score: 16.329578
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 18..96 e-value: 1.8E-24 score: 87.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 97..196 e-value: 2.3E-25 score: 91.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..204
None	No IPR available	PANTHER	PTHR48033:SF5	NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED	coord: 19..352
None	No IPR available	PANTHER	PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 19..352
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 102..214
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 18..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024116.1	Sed0024116.1	mRNA
Sed0024116.2	Sed0024116.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0048578	positive regulation of long-day photoperiodism, flowering
biological_process	GO:0048576	positive regulation of short-day photoperiodism, flowering
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003730	mRNA 3'-UTR binding
molecular_function	GO:0097157	pre-mRNA intronic binding
molecular_function	GO:0003676	nucleic acid binding