Sed0024085 (gene) Chayote v1

Overview
NameSed0024085
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTransposable element protein
LocationLG05: 11510528 .. 11513518 (+)
RNA-Seq ExpressionSed0024085
SyntenySed0024085
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAATCTAACGCAAAACCAAGGCTGATTAGATGGATACTTCTTCTGCAAGAGTTTGACATAGAAATCAAGGACAAGAAGGGATGTGAGAATGTTGTGGCAGATCACCTATCACGACTCAAGGTCACATATCCTGACACAACTATGCTCCGCATATCAGAAAACTTCCCTGATGAGCAAGTTTTTGTGTTGAAAGTAATAGAAGAAAGGAATGCCCCTTGGTTCGTGGACATTGCCAATTATTTAGCAAGCCATATCATCCCATCCCAGATGACGTAACAGCAAGCAAAACGCTTCTTCTATGACGTGAAATTCTATTTCTAGGATCAACCATTTCTTTATAGGTAATGTGCTGATGGGATAATATGTCGATGCGTAGTAGAGTGTAAGAGTCATAAAATATGATCTGACAACCCACGTTTAGGAAAAGCCATGATGCGACCATGGAGGATGGTGCATCATCCAACACACCAAGAAAAGCATCCAATAGTGTCAATTAGAGCCATTAAGAAGCAAGCCACATTGATGTCGATAGTGTCAGTGTCGGTGCTTAGTGGAGGCACGGAGGGCCCGAGCCGTACCCACGATGTCAAGGTTGAGATGGATTTTTGATGAGCAGCTCTAGAGTTATGTCCGTATAAAGCTGAGATATAAGCTCACCAAGTTTGGTGTCAATCGGACACCTGACGAACTCTCCATGCTAGCATATGATTCATCGCCAAAAAGACATGCAAGGGTGGAAGACAGGAAATGGCCCATAATGTACTATAGGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGGCCCTGTGGCCTAAGTGAGCTACCACATGGCACATGAGTGTATCATGTGTGGGCGAGCGCTTGCAAGACGAGTGTCTTGGGCGTCTTCCTTCGGGACTGGAAATTGGGGATAGTGTCGGACGGCACGGGTGTGCCGACATTACGCCCTTGCCCATGGGATAGAGGTTGGGCCATATATCGAGTGGCGGCAAGCTATCTCATAACCAACACCCATGGGCCGAGTTGCATAACCAAGAGTAGTTTTGCTGCATATTCGATGAAGCTTGGTTGAGGTCTAGTGAACCTCACTTGTCAATCCGACGAGCCACAAAGTATGGGCAAAATGAGTTTGGGGCGAGAGTTCCCTACAAGGCTAGCCATGATAAGCGAGATTATCATGGCACCGCACGGGTCAAAAAGTAGGACTGTGACAAGTGGTATCAAAGCCATCCTTTGTGCATATAGTCGGTCAAGAAAGAGAAACCCGAAAGTAGAATTGAAGACATTGCATCTGTGTCAAAAGTGTCTTTGTGGTAGGACAGCTGCGTGTTATTATCAAGTTAGGTGAAGCTGACTCTTGCTACTCATGAATGCCATGAGCAAGCATGTCATGAGGAGAGTCTTAACCGTCTAATGAAGACCAAGTTTGATTGCCAAGGGCTTGGTGAGACAACAATGAAAGAAATAGCCATTATCATCAGAGGGATAATGTTAATGGCTGCAAGCAGAAAAACCAGGGGTCAATGCAACATGCACCAGTCAAGTGCCAAGTAGTGCACAATGCAAGTCCATATGGGTGGACAATGTGGCTGAGGCCAAGTTAAAGTAAGGGCGAGTGTCCCTTGGGTCATTCCATATGCCAAATGGATGACTTCCAACAGAGTTGTCAAAGACCAGCTTCGCGCAAAGAAGAAGCAAGTAGGCTGGAGGAAGCAAAGCTGAAGTGAGCTGCCTCAAGACTAGGAGTGTCTTGTTATGTCCCCAATAGGGTGGGACAAGTGAAGTTGGCAAAGAGTAGTGCCAACAAATCTAATTCGGCTGCGAAGGTTCTGTTGTCAAGACGATGCTAGATTTAAAGTAAAGCTCAGAGTTGTGAAGGGGGTGTGCTCCCCGAGGGTTAGGTAGTGGCCAGAGCCCAGTATTGCGTGTCGTCGGTAGCAATTTTGCTGAAGCCAAGAGGAGAGCTAGGGATGGGGTAGTCCGAGGCGTGATATTAATTCCCACAAAGTTGGCCATACTTATCTGGTGAGTCCTGGCCAAGTCCATAAAAGGGCGCGAGAAAGTCTATGAGGGGCCAAGTCCATAAAAGGACGCGAGAGTGCCCATGAGGGGATAGCCCAAAAGTAGTGTGTCGTCAATCATTGCACTTATTCTAAAGCACGAGTTGCTAGCAAGTCAGCCAACAGCCAGCCGAGGTGTCAGATCGTCATTGGGACGATGCCGAGTTTTAAGTGGGGGAGAATATCATTACCGGCATGGTTATGCCCAAAAAACAAAAGGTGGTCGGATCGTCATCGGGACGATGCCAAGTTTTAAGTGGGGGAGAATATCATAACTGGCATGGTTATGCCCCGTGTTGAGTCATCGAGGACAATGACTATTTTAAGTGGGGGAGAATGTCAGAGTCATAGAATGTGATTTGACAACCCACGTTTAGGAAAAGCCATGATGCGACCATGGAGGATGGTGCATCATCCAACACACCAAGAAAAGCATACTATAGTGTCAATTGGATCAATTAAGAAGCAAGCCACATTGATGTCGACAGTGTCAGTGTTAGTGCTTAGTAGGGGCACGGAGGCCCCGGGATTTACCGACGATGTCAAGGCTCGAGATGGATTTTTGACGAGCGGCTCTGGAGTTATGTCTGTATAAAGCTAAGATATAAGCTCAACAAGTTTGGTGTCAATCGAACACCTGACGAACTCTCCACGCTGGCGTATGATTCCTCGCCAAAAAGACATGCACAGGTGGAAGTTAGGAAATGGCCCATAATGTACTATAGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTCGGCCTTGTGACCTAAGTGAGCTACCACATGGCACATGAGTGTGTCATGGTGTGGGCGAGCGCTTGCAAGACGAGTGTCTTGGGCATCTTCCTTCGGGACTGGAAATCTGGGGACAGTGTCGGACGACACAGGTGTGCCAACATTGCACCCTTGCCCATGGGATAG

mRNA sequence

ATGAGAAAATCTAACGCAAAACCAAGGCTGATTAGATGGATACTTCTTCTGCAAGAGTTTGACATAGAAATCAAGGACAAGAAGGGATGTGAGAATGTTGTGGCAGATCACCTATCACGACTCAAGGTCACATATCCTGACACAACTATGCTCCGCATATCAGAAAACTTCCCTGATGAGCAAGTTTTTGTGTTGAAAGTAATAGAAGAAAGGAATGCCCCTTGGTTCGTGGACATTGCCAATTATTTAGCAAGAAAAGCCATGATGCGACCATGGAGGATGGTGCATCATCCAACACACCAAGAAAAGCATCCAATAGTGTCAATTAGAGCCATTAAGAAGCAAGCCACATTGATGTCGATAGTGTCAGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGGCCCTGTGGCCTAATGAGCTACCACATGGCACATGAGTGTGTCATGGTGTGGGCGAGCGCTTGCAAGACGAGTGTCTTGGGCATCTTCCTTCGGGACTGGAAATCTGGGGACAGTGTCGGACGACACAGGTGTGCCAACATTGCACCCTTGCCCATGGGATAG

Coding sequence (CDS)

ATGAGAAAATCTAACGCAAAACCAAGGCTGATTAGATGGATACTTCTTCTGCAAGAGTTTGACATAGAAATCAAGGACAAGAAGGGATGTGAGAATGTTGTGGCAGATCACCTATCACGACTCAAGGTCACATATCCTGACACAACTATGCTCCGCATATCAGAAAACTTCCCTGATGAGCAAGTTTTTGTGTTGAAAGTAATAGAAGAAAGGAATGCCCCTTGGTTCGTGGACATTGCCAATTATTTAGCAAGAAAAGCCATGATGCGACCATGGAGGATGGTGCATCATCCAACACACCAAGAAAAGCATCCAATAGTGTCAATTAGAGCCATTAAGAAGCAAGCCACATTGATGTCGATAGTGTCAGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGGCCCTGTGGCCTAATGAGCTACCACATGGCACATGAGTGTGTCATGGTGTGGGCGAGCGCTTGCAAGACGAGTGTCTTGGGCATCTTCCTTCGGGACTGGAAATCTGGGGACAGTGTCGGACGACACAGGTGTGCCAACATTGCACCCTTGCCCATGGGATAG

Protein sequence

MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDEQVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMVHHPTHQEKHPIVSIRAIKKQATLMSIVSGEAWCQLSTTPGPCGLMSYHMAHECVMVWASACKTSVLGIFLRDWKSGDSVGRHRCANIAPLPMG
Homology
[Close]
BLAST of Sed0024085 vs. NCBI nr
Match: XP_038715980.1 (uncharacterized protein LOC120009442 [Tripterygium wilfordii])

HSP 1 Score: 111.7 bits (278), Expect = 7.0e-21
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 0 

Query: 1   MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDE 60
           + K+NAKPRL+RWILLLQEFD+EIKDKKG ENVVADHLSRL      +  + I+E+FPDE
Sbjct: 479 LSKANAKPRLLRWILLLQEFDLEIKDKKGVENVVADHLSRLPGQNLISHGIPINEHFPDE 538

Query: 61  QVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMV 96
           Q+F+   I  +  PW+ DIAN+L    M   W  +
Sbjct: 539 QLFLTNAISSKLTPWYADIANFLVSGKMPSHWSKI 573

[Close]
BLAST of Sed0024085 vs. NCBI nr
Match: XP_038699648.1 (uncharacterized protein LOC119996938, partial [Tripterygium wilfordii])

HSP 1 Score: 111.7 bits (278), Expect = 7.0e-21
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 0 

Query: 1   MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDE 60
           + K+NAKPRL+RWILLLQEFD+EIKDKKG ENVVADHLSRL      +  + I+E+FPDE
Sbjct: 719 LSKANAKPRLLRWILLLQEFDLEIKDKKGVENVVADHLSRLPGQNLISHGIPINEHFPDE 778

Query: 61  QVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMV 96
           Q+F+   I  +  PW+ DIAN+L    M   W  +
Sbjct: 779 QLFLTNAISSKLTPWYADIANFLVSGKMPSHWSKI 813

[Close]
BLAST of Sed0024085 vs. NCBI nr
Match: XP_038714979.1 (uncharacterized protein LOC120008660 [Tripterygium wilfordii])

HSP 1 Score: 111.7 bits (278), Expect = 7.0e-21
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 0 

Query: 1   MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDE 60
           + K+NAKPRL+RWILLLQEFD+EIKDKKG ENVVADHLSRL      +  + I+E+FPDE
Sbjct: 863 LSKANAKPRLLRWILLLQEFDLEIKDKKGVENVVADHLSRLPGQNLISHGIPINEHFPDE 922

Query: 61  QVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMV 96
           Q+F+   I  +  PW+ DIAN+L    M   W  +
Sbjct: 923 QLFLTNAISSKLTPWYADIANFLVSGKMPSHWSKI 957

[Close]
BLAST of Sed0024085 vs. NCBI nr
Match: XP_039121508.1 (uncharacterized protein LOC120258213 [Dioscorea cayenensis subsp. rotundata])

HSP 1 Score: 111.3 bits (277), Expect = 9.1e-21
Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 0 

Query: 1   MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTT--MLRISENFP 60
           + K +AKPRLIRW+LLLQEFD+EIKDK+G EN+ ADHLSRL VT  ++T   + I++ FP
Sbjct: 184 LSKQDAKPRLIRWVLLLQEFDLEIKDKRGAENLAADHLSRL-VTPSESTNERMEINDGFP 243

Query: 61  DEQVFVLKVIEERNAPWFVDIANYLARKAMMRPWRMVHHPTHQEKHPIVS 109
           DEQ+F ++V++E   PWF D ANYLA  A  RP  +    T+Q+K    S
Sbjct: 244 DEQLFSIRVLQEEETPWFADYANYLA--AGTRPVGL----TYQQKKKFYS 286

[Close]
BLAST of Sed0024085 vs. NCBI nr
Match: XP_021832270.1 (uncharacterized protein LOC110772166 [Prunus avium])

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-20
Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = 0 

Query: 1   MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTY-PDTTMLRISENFPD 60
           + K +AKPRLIRWILLLQEFD+EI+DKKG ENVVADHLSRL V    +  +L ++ENFPD
Sbjct: 890 LSKKDAKPRLIRWILLLQEFDLEIRDKKGSENVVADHLSRLIVPISAEEDLLPLNENFPD 949

Query: 61  EQVFVLKVIEERNAPWFVDIANYLAR 86
           EQ+F   +I    +PWFVD+ NYLAR
Sbjct: 950 EQLFATHII----SPWFVDLVNYLAR 971

[Close]
BLAST of Sed0024085 vs. ExPASy TrEMBL
Match: A0A6P5TZ80 (uncharacterized protein LOC110772166 OS=Prunus avium OX=42229 GN=LOC110772166 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 7.5e-21
Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = 0 

Query: 1   MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTY-PDTTMLRISENFPD 60
           + K +AKPRLIRWILLLQEFD+EI+DKKG ENVVADHLSRL V    +  +L ++ENFPD
Sbjct: 890 LSKKDAKPRLIRWILLLQEFDLEIRDKKGSENVVADHLSRLIVPISAEEDLLPLNENFPD 949

Query: 61  EQVFVLKVIEERNAPWFVDIANYLAR 86
           EQ+F   +I    +PWFVD+ NYLAR
Sbjct: 950 EQLFATHII----SPWFVDLVNYLAR 971

[Close]
BLAST of Sed0024085 vs. ExPASy TrEMBL
Match: A0A5E4G4K7 (PREDICTED: LOW QUALITY PROTEIN (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B004320 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 0 

Query: 1   MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDE 60
           + K +AKPRLIRWILLLQEFD+EI+DKKGCENVVADHLSR+ V      +L ++E FPDE
Sbjct: 242 LTKKDAKPRLIRWILLLQEFDLEIRDKKGCENVVADHLSRIVVEEQGEAVLPLNETFPDE 301

Query: 61  QVFVLKVIEERNAPWFVDIANYLA 85
           Q++V +V E    PW+ D  NYLA
Sbjct: 302 QLYVAQVKE----PWYADFVNYLA 321

[Close]
BLAST of Sed0024085 vs. ExPASy TrEMBL
Match: A0A5H2XVG6 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_1205S000100 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 0 

Query: 1    MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDE 60
            + K +AKPRLIRWILLLQEFD+EI+DKKGCENVVADHLSR+ V      +L ++E FPDE
Sbjct: 1145 LTKKDAKPRLIRWILLLQEFDLEIRDKKGCENVVADHLSRIVVEEQGEAVLPLNETFPDE 1204

Query: 61   QVFVLKVIEERNAPWFVDIANYLA 85
            Q++V +V E    PW+ D  NYLA
Sbjct: 1205 QLYVAQVKE----PWYADFVNYLA 1224

[Close]
BLAST of Sed0024085 vs. ExPASy TrEMBL
Match: A0A4Y1R644 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_009314 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 0 

Query: 1   MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDE 60
           + K +AKPRLIRWILLLQEFD+EI+DKKGCENVVADHLSR+ V      +L ++E FPDE
Sbjct: 755 LTKKDAKPRLIRWILLLQEFDLEIRDKKGCENVVADHLSRIVVEEQGEAVLPLNETFPDE 814

Query: 61  QVFVLKVIEERNAPWFVDIANYLA 85
           Q++V +V E    PW+ D  NYLA
Sbjct: 815 QLYVAQVKE----PWYADFVNYLA 834

[Close]
BLAST of Sed0024085 vs. ExPASy TrEMBL
Match: A0A5H2XRK6 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_1479S000100 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 0 

Query: 1   MRKSNAKPRLIRWILLLQEFDIEIKDKKGCENVVADHLSRLKVTYPDTTMLRISENFPDE 60
           + K +AKPRLIRWILLLQEFD+EI+DKKGCENVVADHLSR+ V      +L ++E FPDE
Sbjct: 373 LTKKDAKPRLIRWILLLQEFDLEIRDKKGCENVVADHLSRIVVEEQGEAVLPLNETFPDE 432

Query: 61  QVFVLKVIEERNAPWFVDIANYLA 85
           Q++V +V E    PW+ D  NYLA
Sbjct: 433 QLYVAQVKE----PWYADFVNYLA 452

The following BLAST results are available for this feature:
BLAST of Sed0024085 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038715980.17.0e-2155.79uncharacterized protein LOC120009442 [Tripterygium wilfordii][more]
XP_038699648.17.0e-2155.79uncharacterized protein LOC119996938, partial [Tripterygium wilfordii][more]
XP_038714979.17.0e-2155.79uncharacterized protein LOC120008660 [Tripterygium wilfordii][more]
XP_039121508.19.1e-2153.64uncharacterized protein LOC120258213 [Dioscorea cayenensis subsp. rotundata][more]
XP_021832270.11.6e-2063.95uncharacterized protein LOC110772166 [Prunus avium][more]
BLAST of Sed0024085 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0024085 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6P5TZ807.5e-2163.95uncharacterized protein LOC110772166 OS=Prunus avium OX=42229 GN=LOC110772166 PE... [more]
A0A5E4G4K71.3e-2061.90PREDICTED: LOW QUALITY PROTEIN (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B0... [more]
A0A5H2XVG61.3e-2061.90Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_1205S000100 PE=4 ... [more]
A0A4Y1R6441.3e-2061.90Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_009314 PE=4 SV=1[more]
A0A5H2XRK61.3e-2061.90Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_1479S000100 PE=4 ... [more]
BLAST of Sed0024085 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 1..90
NoneNo IPR availablePANTHERPTHR24559:SF373REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATEDcoord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024085.1Sed0024085.1mRNA