Sed0023989 (gene) Chayote v1

Overview


Name	Sed0023989
Type	gene
Organism	Sechium edule (Chayote v1)
Description	LIM domain-containing protein WLIM1
Location	LG01: 21848418 .. 21849533 (+)
RNA-Seq Expression	Sed0023989
Synteny	Sed0023989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTTGCAGGAACAACCCAGAAATGCATGGCCTGCGACAAGACAGTCTACTTAGTCGACAAGCTCACCGCCGACAATCGTGTCTTCCACAAAGCATGTTTCCGCTGCCACCACTGCAAAGGAACCCTAAAGGTAAATCGAATCTAACTCAATTCAACTCCGATCTGTGGATTCAGATCTCTGGGTAATGTTTCTTTGAAGCTTAATTTTAGTGGGTTGTGGTTGGATTTTGGATTACACGGTTCATTAGTTATAGATCTGATTTTGCAGTTGAGTAATTACAATTCGTTTGAAGGGGTTCTATATTGCCGCCCGCATTTTGATCAGCTGTTTAAGAGAACTGGAAGCTTAGACAAAAGCTTTGAAGGTATTTAAGAAGAAAAAGAAACTTAGATTATATATACAATCAGTCATGAATCTCAAAACCAACATTCTTTCAATTGAATTCAGGGACGCCAAAGATTGGGAAACCGGAGAAACCGGCTGATTCTGAGGTATCTGATCAATTAATTAATTAGTTACTCTCTGTTTTGGCTGTTGAGTAATTGTTGAACTTTGTTTGACAGAAACCAGCGGCGACCAAGGTCGCAAGCATGTTCGTAGGCACTAAAGACAAGTGCCTTGGCTGTAACAACACTGTGTATCCGACTGAGAAGGTAAATTTGAGCTGAAACCAGAAATGAACTAAGTTGTAATTAATTATTGGGACGTCTCGCTGTTCGGTTAGCGAGTGAGAATCTGAGAACTTGCACCAATCATGATAACACACTATACAAACTTATAATACACTCAAAGATCCTAACTCTGTTTTGACATACTATTTGTGTTCTTATTTGTCAGTTTTTCTTTAATTGAATTATAACTGAGCTTTTCTTTGATTGAATTGAAACTGATGAATTCTGTTTTGAAATTTTGTTGAATTGGTTCTTGATTTCTCAGGTTTCAGTGAATGGAACTTTGTACCATAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATTGCACATGACGGCCGACTCTACTGCAAACATCACCACACTCAACTCATCAAAGAAAAAGGAAACTTAAGCCAGCTTGAAGGTAGCCATTAA

mRNA sequence

ATGGCTTTTGCAGGAACAACCCAGAAATGCATGGCCTGCGACAAGACAGTCTACTTAGTCGACAAGCTCACCGCCGACAATCGTGTCTTCCACAAAGCATGTTTCCGCTGCCACCACTGCAAAGGAACCCTAAAGTTGAGTAATTACAATTCGTTTGAAGGGGTTCTATATTGCCGCCCGCATTTTGATCAGCTGTTTAAGAGAACTGGAAGCTTAGACAAAAGCTTTGAAGGGACGCCAAAGATTGGGAAACCGGAGAAACCGGCTGATTCTGAGAAACCAGCGGCGACCAAGGTCGCAAGCATGTTCGTAGGCACTAAAGACAAGTGCCTTGGCTGTAACAACACTGTGTATCCGACTGAGAAGGTTTCAGTGAATGGAACTTTGTACCATAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATTGCACATGACGGCCGACTCTACTGCAAACATCACCACACTCAACTCATCAAAGAAAAAGGAAACTTAAGCCAGCTTGAAGGTAGCCATTAA

Coding sequence (CDS)

ATGGCTTTTGCAGGAACAACCCAGAAATGCATGGCCTGCGACAAGACAGTCTACTTAGTCGACAAGCTCACCGCCGACAATCGTGTCTTCCACAAAGCATGTTTCCGCTGCCACCACTGCAAAGGAACCCTAAAGTTGAGTAATTACAATTCGTTTGAAGGGGTTCTATATTGCCGCCCGCATTTTGATCAGCTGTTTAAGAGAACTGGAAGCTTAGACAAAAGCTTTGAAGGGACGCCAAAGATTGGGAAACCGGAGAAACCGGCTGATTCTGAGAAACCAGCGGCGACCAAGGTCGCAAGCATGTTCGTAGGCACTAAAGACAAGTGCCTTGGCTGTAACAACACTGTGTATCCGACTGAGAAGGTTTCAGTGAATGGAACTTTGTACCATAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATTGCACATGACGGCCGACTCTACTGCAAACATCACCACACTCAACTCATCAAAGAAAAAGGAAACTTAAGCCAGCTTGAAGGTAGCCATTAA

Protein sequence

MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPTEKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEGSH

Homology

[Close]

BLAST of Sed0023989 vs. NCBI nr
Match: KAG6591426.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 380.2 bits (975), Expect = 1.0e-101
Identity = 173/179 (96.65%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE+P ATKVASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAH+GRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Sed0023989 vs. NCBI nr
Match: XP_023536448.1 (LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 1.0e-101
Identity = 173/179 (96.65%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 48  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 107

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE+P ATKVASMFVGTKDKCLGC NTVYPT
Sbjct: 108 HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 167

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAH+GRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 168 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 226

[Close]

BLAST of Sed0023989 vs. NCBI nr
Match: XP_038900157.1 (LIM domain-containing protein WLIM1 [Benincasa hispida])

HSP 1 Score: 379.8 bits (974), Expect = 1.3e-101
Identity = 173/179 (96.65%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATK+ASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKLASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAH+GRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Sed0023989 vs. NCBI nr
Match: XP_022936105.1 (LIM domain-containing protein WLIM1 [Cucurbita moschata])

HSP 1 Score: 379.8 bits (974), Expect = 1.3e-101
Identity = 173/179 (96.65%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE+P ATKVASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAH+GRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Sed0023989 vs. NCBI nr
Match: XP_004141291.1 (LIM domain-containing protein WLIM1 [Cucumis sativus] >KGN55277.1 hypothetical protein Csa_012962 [Cucumis sativus])

HSP 1 Score: 377.9 bits (969), Expect = 5.0e-101
Identity = 172/179 (96.09%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSEKP ATKVASMFVGTKDKCLGCN TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAH+GRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Sed0023989 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.1e-94
Identity = 154/177 (87.01%), Postives = 168/177 (94.92%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQ FKRTGSL+KSFEGTPKIGKP++P + E+PA TKV++MF GT++KC+GC+ TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEG 178
           EKVSVNGTLYHKSCFKC HGGCTISPSNYIAH+G+LYCKHHH QLIKEKGNLSQLEG
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEG 177

[Close]

BLAST of Sed0023989 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.2e-75
Identity = 124/175 (70.86%), Postives = 145/175 (82.86%), Query Frame = 0


Query: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
           +F GTTQKC  C+KTVYLVDKL A+ RV+HKACFRCHHC  TLKLSN+NSF+GV+YCR H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 62  FDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPTE 121
           FDQLFKRTGSL+KSF+GTPK  KPE+    E  +A +++S F GT+DKC  C   VYP E
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIE 122

Query: 122 KVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLE 177
           +V V+GT YH++CFKCCHGGCTISPSNYIAH+GRLYCKHHH QL K+KGN SQLE
Sbjct: 123 RVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLE 176

[Close]

BLAST of Sed0023989 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.0e-58
Identity = 102/175 (58.29%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HF+QLFK +GS  K+F+ +P     +KP        +++A MF GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGSFSKNFQ-SPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQL 176
           EKV+V    YHKSCFKC HGGC ISPSNY A +G LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of Sed0023989 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-56
Identity = 102/179 (56.98%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAAT----KVASMFVGTKDKCLGCNNT 120
           HF+QLFK +GS +K+F+       P K AD   P  T    +VA  F GT++KC  C+ T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V    YHKSCFKC HGGC ISPSNY A +G LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of Sed0023989 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.6e-54
Identity = 91/175 (52.00%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC  CDKTVY+VD L+ +   +HK+CFRC HCKGTL++SNY+S +GVLYC+ 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HF+QLFK +G+  K+F+     GK EKP  +  P  +K++S+F GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGNFSKNFQP----GKTEKPELTRTP--SKISSIFCGTQDKCAACEKTVYPL 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQL 176
           EK+ + G  +HK+CF+C HGGCT++ S+Y + D  LYC+HH  QL  EKGN + +
Sbjct: 121 EKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHV 169

[Close]

BLAST of Sed0023989 vs. ExPASy TrEMBL
Match: A0A6J1FCP1 (LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC111442805 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 6.3e-102
Identity = 173/179 (96.65%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE+P ATKVASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAH+GRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTPYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Sed0023989 vs. ExPASy TrEMBL
Match: A0A0A0L3T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.4e-101
Identity = 172/179 (96.09%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSEKP ATKVASMFVGTKDKCLGCN TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAH+GRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Sed0023989 vs. ExPASy TrEMBL
Match: A0A5A7VG01 (LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001620 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.1e-101
Identity = 171/179 (95.53%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSEKP ATKVASMF+GTKDKCLGCN TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAH+GRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Sed0023989 vs. ExPASy TrEMBL
Match: A0A1S3BUC8 (LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103493607 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.1e-101
Identity = 171/179 (95.53%), Postives = 174/179 (97.21%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKP DSEKP ATKVASMF+GTKDKCLGCN TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFIGTKDKCLGCNKTVYPT 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHGGCTISPSNYIAH+GRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 121 EKVSVNGTSYHKSCFKCCHGGCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 179

[Close]

BLAST of Sed0023989 vs. ExPASy TrEMBL
Match: A0A6J1IP16 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111477270 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.1e-101
Identity = 172/179 (96.09%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 47  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 106

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSE+P ATKVASMFVGTKDKCLGC NTVYPT
Sbjct: 107 HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 166

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEGSH 180
           EKVSVNGT YHKSCFKCCHG CTISPSNYIAH+GRLYCKHHHTQLIKEKGNLSQLEGSH
Sbjct: 167 EKVSVNGTSYHKSCFKCCHGRCTISPSNYIAHEGRLYCKHHHTQLIKEKGNLSQLEGSH 225

[Close]

BLAST of Sed0023989 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 346.3 bits (887), Expect = 1.5e-95
Identity = 154/177 (87.01%), Postives = 168/177 (94.92%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HFDQ FKRTGSL+KSFEGTPKIGKP++P + E+PA TKV++MF GT++KC+GC+ TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQLEG 178
           EKVSVNGTLYHKSCFKC HGGCTISPSNYIAH+G+LYCKHHH QLIKEKGNLSQLEG
Sbjct: 121 EKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEG 177

[Close]

BLAST of Sed0023989 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 224.9 bits (572), Expect = 5.0e-59
Identity = 102/175 (58.29%), Postives = 125/175 (71.43%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAATKVASMFVGTKDKCLGCNNTVYPT 120
           HF+QLFK +GS  K+F+ +P     +KP        +++A MF GT+DKC  C  TVYP 
Sbjct: 61  HFEQLFKESGSFSKNFQ-SPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPI 120

Query: 121 EKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQL 176
           EKV+V    YHKSCFKC HGGC ISPSNY A +G LYCKHH  QL KEKG+ + L
Sbjct: 121 EKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 174

[Close]

BLAST of Sed0023989 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 220.7 bits (561), Expect = 9.4e-58
Identity = 102/179 (56.98%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAAT----KVASMFVGTKDKCLGCNNT 120
           HF+QLFK +GS +K+F+       P K AD   P  T    +VA  F GT++KC  C+ T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V    YHKSCFKC HGGC ISPSNY A +G LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of Sed0023989 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 220.7 bits (561), Expect = 9.4e-58
Identity = 102/179 (56.98%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAAT----KVASMFVGTKDKCLGCNNT 120
           HF+QLFK +GS +K+F+       P K AD   P  T    +VA  F GT++KC  C+ T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V    YHKSCFKC HGGC ISPSNY A +G LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

[Close]

BLAST of Sed0023989 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 220.7 bits (561), Expect = 9.4e-58
Identity = 102/179 (56.98%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSEKPAAT----KVASMFVGTKDKCLGCNNT 120
           HF+QLFK +GS +K+F+       P K AD   P  T    +VA  F GT++KC  C+ T
Sbjct: 61  HFEQLFKESGSFNKNFQ------SPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKT 120

Query: 121 VYPTEKVSVNGTLYHKSCFKCCHGGCTISPSNYIAHDGRLYCKHHHTQLIKEKGNLSQL 176
           VYP EKV+V    YHKSCFKC HGGC ISPSNY A +G LYCKHH  QL KEKG+ + L
Sbjct: 121 VYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHL 173

The following BLAST results are available for this feature:

BLAST of Sed0023989 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591426.1	1.0e-101	96.65	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023536448.1	1.0e-101	96.65	LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038900157.1	1.3e-101	96.65	LIM domain-containing protein WLIM1 [Benincasa hispida]	[more]
XP_022936105.1	1.3e-101	96.65	LIM domain-containing protein WLIM1 [Cucurbita moschata]	[more]
XP_004141291.1	5.0e-101	96.09	LIM domain-containing protein WLIM1 [Cucumis sativus] >KGN55277.1 hypothetical p...	[more]

BLAST of Sed0023989 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	2.1e-94	87.01	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	2.2e-75	70.86	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	7.0e-58	58.29	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q9M047	1.3e-56	56.98	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
Q1ECF5	3.6e-54	52.00	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]

BLAST of Sed0023989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCP1	6.3e-102	96.65	LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC11144280...	[more]
A0A0A0L3T9	2.4e-101	96.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1	[more]
A0A5A7VG01	3.1e-101	95.53	LIM domain-containing protein WLIM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3BUC8	3.1e-101	95.53	LIM domain-containing protein WLIM1 OS=Cucumis melo OX=3656 GN=LOC103493607 PE=4...	[more]
A0A6J1IP16	4.1e-101	96.09	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]

BLAST of Sed0023989 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	1.5e-95	87.01	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	5.0e-59	58.29	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	9.4e-58	56.98	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	9.4e-58	56.98	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	9.4e-58	56.98	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 109..161 e-value: 2.2E-12 score: 57.2 coord: 9..61 e-value: 8.1E-11 score: 51.9
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 110..164 e-value: 6.6E-12 score: 45.5 coord: 10..64 e-value: 3.5E-10 score: 40.0
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.0879
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 108..168 score: 12.583
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 104..174 e-value: 3.9E-19 score: 70.6 coord: 4..74 e-value: 1.5E-19 score: 71.9
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..179
None	No IPR available	PANTHER	PTHR24206:SF92	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 1..179
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 2.5383E-39 score: 126.425
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 110..170 e-value: 3.42274E-36 score: 118.342
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 136..175
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 102..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023989.1	Sed0023989.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding