Sed0023915 (gene) Chayote v1

Overview


Name	Sed0023915
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Polyadenylate-binding protein-interacting protein 5
Location	LG13: 25300096 .. 25302098 (-)
RNA-Seq Expression	Sed0023915
Synteny	Sed0023915

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATCTTCTTCGATACTTCTCAATCTCAATTCCTCATTTTCGATCACTGCCTCTTCTCAATCGTCGAGCGATTAGGGTTCCGCAATTTCTCTCGTGAATTCGGCGTTTTAGATCGAGAATTTTGTCTCCGAGGGTGAGTTTTCTTGTTCTGGAAGTCCGATCGTCGTGATATGTGTTGAAATCTCTTGTTCTTGTTTCGATTCTACTGTTTTTTGTGTGTGTTTTTGGGCTGTGAAGTGGAATAGATGAAGTTTGATGGCGATGCAACTGGTGTTCTTGCTATGTTCTGTAATCGAACTGATTTGCGGTGGTTTTGTAATCGCAGTTGAAGAAATATTAGGTTTAGGAGTGATGTTTTGTGGTGTTCTAATGTAGGTGGTGATCAAGATTTGCTTTCTTTGGTTGTGAAGCGATGAAATGAAATACATAGTAATTTTCTTCTGTAAATCTTGGTTTTGAAGTGGTTTGCTGTAAAGGTTTTGATTCTTCTGATGTTATCTTGATCTGATGATTCTGATTTTAGCTTTTCTTGGATTTCGTTTGAACTCTTTATTGGAATAGTTTGCAGATTAAGTTAGATAGTTAACTTCTGGCGAGGAATATAGATCATAGATGAAGTTAATATTATCTTTCTGATCTTGCTACTTTTGATACATATTGCTAAAAATCTGATTGTGAGATGCAGCTCTCTTGAATTTTCTTGATTTGAATATTTTTGTTCCTTTATGTTGTTGAAATACCTTGAACTATGTTGCTCCATGATTACTTAGCCAGACGTCTCACTTCCCGATCACCGAGCGGGGATCTCGTATTGAACTTTTATGTATTTTGGGGCATTTTTTGTATTAGGATTTTATGAAATTGCAAAACTTCTTTAAACCCTAGTCCCGTTTGACCAAGTTTTTTTTTGTTCCTATCTCCTTAGTAAATCAGTTTCTCTCCTTTGCCCGTGAACGTAGCTAACAAACGTGAGTGTACCACATAAATCACTACGTTCTTTTTTTTAGTTTTTCTTTAATTCTTGATCGTTCTGTTTATTCAGCACATTTTAATTATTTATGCGTCGGCAATATTTAATTAAAATGCTTGCAGAACTCGAAGGCTATGTCAGACTTGATTTGCGTATCAAACAAAGTGTTATGAGTTATGTACTTAATCGTTCTCGTTTTTGTTCGTTTTTTGGGGTTAAATTTTGTTCTACAGGAAAAGCAGGGTGAGATAACGGTCAGTACTGTATCTGGTACAATGAAGCCGCTTGGATCATCTCTGAATCCATATGCAACATCCTACATTCCACTCTCCATGAGAGAGGCTAACAAAAGTCCTAGACCAGAAAACTCTTCCGTGGAACGTATGAGTGTCTTTCCCGGATATTCTGGATATGCTGAACATTATATGCATAATCGTCAATATGAGAACATTTCCCCTCGTTTAAATCTGCGTCATGGTGAAAAGTCGCCCGTTGCGGTTGGATCTGCTGTGAAGAATCACACTTTTCGTGGACCAGTTTCACAACACAGTAATGAATTGGCTGAAATGGAGTTGCTTGGTAGAGAATTTAGCATGGATCTGGAATTTCTTCAGGCAAGTTTCCCTGGACTATCTGAACAGTCCCTTAGTGATGTCTATTTGGCAAATAATTGTGACTTGGATGCTGCTATAGACATGCTGAGCCTGCTTGAGGTTCTCTCTTTCGACCCTCCTCCGATTTCTTGCTTGTATCGTAAACTTCTGTTTCACTCGAGTTTCTGCTTCGGTTGACGAATGTTGTTTATGCTTGGGATTTGTATTGCATATCATGTTGTGAGTACTAACTCTTTTGTTGGTTTAATCTGATGTTCAGAACAAACATGCACCTGATTTTGAATATGACCCTGAAAGTCTGCCAGACACGTTGGACATCGGCGATATCTCGGAACCCGGGTTTGCAGCTGTCGGTCAACCATCTTTCAGAACGAAGAATGTAGCCAATGGCGCAAGTACGTCGTCCAGATTCTAG

mRNA sequence

ATGAGGATCTTCTTCGATACTTCTCAATCTCAATTCCTCATTTTCGATCACTGCCTCTTCTCAATCGTCGAGCGATTAGGGTTCCGCAATTTCTCTCGTGAATTCGGCGTTTTAGATCGAGAATTTTGTCTCCGAGGATTTGCTTTCTTTGGTTGTGAAAACTCGAAGGCTATGTCAGACTTGATTTGCGAAAAGCAGGGTGAGATAACGGTCAGTACTGTATCTGGTACAATGAAGCCGCTTGGATCATCTCTGAATCCATATGCAACATCCTACATTCCACTCTCCATGAGAGAGGCTAACAAAAGTCCTAGACCAGAAAACTCTTCCGTGGAACGTATGAGTGTCTTTCCCGGATATTCTGGATATGCTGAACATTATATGCATAATCGTCAATATGAGAACATTTCCCCTCGTTTAAATCTGCGTCATGGTGAAAAGTCGCCCGTTGCGGTTGGATCTGCTGTGAAGAATCACACTTTTCGTGGACCAGTTTCACAACACAGTAATGAATTGGCTGAAATGGAGTTGCTTGGTAGAGAATTTAGCATGGATCTGGAATTTCTTCAGGCAAGTTTCCCTGGACTATCTGAACAGTCCCTTAGTGATGTCTATTTGGCAAATAATTGTGACTTGGATGCTGCTATAGACATGCTGAGCCTGCTTGAGAACAAACATGCACCTGATTTTGAATATGACCCTGAAAGTCTGCCAGACACGTTGGACATCGGCGATATCTCGGAACCCGGGTTTGCAGCTGTCGGTCAACCATCTTTCAGAACGAAGAATGTAGCCAATGGCGCAAGTACGTCGTCCAGATTCTAG

Coding sequence (CDS)

ATGAGGATCTTCTTCGATACTTCTCAATCTCAATTCCTCATTTTCGATCACTGCCTCTTCTCAATCGTCGAGCGATTAGGGTTCCGCAATTTCTCTCGTGAATTCGGCGTTTTAGATCGAGAATTTTGTCTCCGAGGATTTGCTTTCTTTGGTTGTGAAAACTCGAAGGCTATGTCAGACTTGATTTGCGAAAAGCAGGGTGAGATAACGGTCAGTACTGTATCTGGTACAATGAAGCCGCTTGGATCATCTCTGAATCCATATGCAACATCCTACATTCCACTCTCCATGAGAGAGGCTAACAAAAGTCCTAGACCAGAAAACTCTTCCGTGGAACGTATGAGTGTCTTTCCCGGATATTCTGGATATGCTGAACATTATATGCATAATCGTCAATATGAGAACATTTCCCCTCGTTTAAATCTGCGTCATGGTGAAAAGTCGCCCGTTGCGGTTGGATCTGCTGTGAAGAATCACACTTTTCGTGGACCAGTTTCACAACACAGTAATGAATTGGCTGAAATGGAGTTGCTTGGTAGAGAATTTAGCATGGATCTGGAATTTCTTCAGGCAAGTTTCCCTGGACTATCTGAACAGTCCCTTAGTGATGTCTATTTGGCAAATAATTGTGACTTGGATGCTGCTATAGACATGCTGAGCCTGCTTGAGAACAAACATGCACCTGATTTTGAATATGACCCTGAAAGTCTGCCAGACACGTTGGACATCGGCGATATCTCGGAACCCGGGTTTGCAGCTGTCGGTCAACCATCTTTCAGAACGAAGAATGTAGCCAATGGCGCAAGTACGTCGTCCAGATTCTAG

Protein sequence

MRIFFDTSQSQFLIFDHCLFSIVERLGFRNFSREFGVLDREFCLRGFAFFGCENSKAMSDLICEKQGEITVSTVSGTMKPLGSSLNPYATSYIPLSMREANKSPRPENSSVERMSVFPGYSGYAEHYMHNRQYENISPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELLGREFSMDLEFLQASFPGLSEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTLDIGDISEPGFAAVGQPSFRTKNVANGASTSSRF

Homology

[Close]

BLAST of Sed0023915 vs. NCBI nr
Match: XP_038900178.1 (polyadenylate-binding protein-interacting protein 5-like [Benincasa hispida])

HSP 1 Score: 249.6 bits (636), Expect = 3.1e-62
Identity = 136/211 (64.45%), Postives = 151/211 (71.56%), Query Frame = 0


Query: 78  MKPLGSSLNPYATSYIPLSMREANKSPRPENSSVE--------------RMSVFPGYSGY 137
           M P GSSLNPYATSYIPLS R AN++   ENSS E              R ++     GY
Sbjct: 1   MNPHGSSLNPYATSYIPLSQRGANRTFVAENSSRENIGSKRTFIVENASRENIGANLPGY 60

Query: 138 AEHYMHNRQYENISPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELLGREFS 197
           +E  ++N  Y NISPRLN+ HG+K+PVA  SAVKNH F G +SQ S +L EME+  RE +
Sbjct: 61  SEQCVYNPPYSNISPRLNMHHGKKAPVAAASAVKNHPFHGSLSQQSGDLTEMEMFDREVN 120

Query: 198 MDLEFLQASFPGLSEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTLDI 257
           MDLE LQ SFPGLSEQSL+DVY AN  DLDAAIDMLS LENKH  D EYDPESLPDTLDI
Sbjct: 121 MDLELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDI 180

Query: 258 GDISEPGFAAVGQPSFRTKNVANGASTSSRF 275
           GDISE GF AV Q SFR KNVAN ASTSSRF
Sbjct: 181 GDISESGFVAVDQASFRMKNVANHASTSSRF 211

[Close]

BLAST of Sed0023915 vs. NCBI nr
Match: KAA0038789.1 (polyadenylate-binding protein-interacting protein 5 [Cucumis melo var. makuwa] >TYK31409.1 polyadenylate-binding protein-interacting protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 5.3e-62
Identity = 135/216 (62.50%), Postives = 159/216 (73.61%), Query Frame = 0


Query: 59  SDLICEKQGEITVSTVSGTMKPLGSSLNPYATSYIPLSMREANKSPRPENSSVERMSVFP 118
           SD+  E   +I + + SG MKP GSSLNP+ATSYIPLS R AN++   EN+S  R ++  
Sbjct: 13  SDVALEGLDKIEIVSPSGEMKPHGSSLNPFATSYIPLSQRGANRTFIAENTS--RENIGA 72

Query: 119 GYSGYAEHYMHNRQYENISPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELL 178
              GY+E  ++     +ISPRLN+ HG+K+ VA  SAVKNH F G +SQ S++L+EME+ 
Sbjct: 73  NVPGYSEQCLYPPYNNSISPRLNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEIF 132

Query: 179 GREFSMDLEFLQASFPGLSEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLP 238
            RE +MDLE LQ SFPGLSEQSL+DVY AN  DLDAAIDMLS LENKH  D EYD ESLP
Sbjct: 133 DREVNMDLELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLP 192

Query: 239 DTLDIGDISEPGFAAVGQPSFRTKNVANGASTSSRF 275
           DTLDIGDISE GF  V QPSFR KNVAN ASTSSRF
Sbjct: 193 DTLDIGDISESGFVTVDQPSFRMKNVANQASTSSRF 226

[Close]

BLAST of Sed0023915 vs. NCBI nr
Match: KAG7031819.1 (Polyadenylate-binding protein-interacting protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.9 bits (616), Expect = 6.5e-60
Identity = 130/208 (62.50%), Postives = 159/208 (76.44%), Query Frame = 0


Query: 67  GEITVSTVSGTMKPLGSSLNPYATSYIPLSMREANKSPRPENSSVERMSVFPGYSGYAEH 126
           G++ + +VSG MKP+GSSLNPYATSYIPLS REANK+  PENSS  R +V     GY+EH
Sbjct: 25  GKVLIISVSGAMKPIGSSLNPYATSYIPLSKREANKTFIPENSS--RGNVGTIIPGYSEH 84

Query: 127 YMHNRQYENISPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELLGREFSMDL 186
           +++N QY++ISP LN+  GEK+P +V SAVKNH F GP S+ + E+A M   GRE  M+L
Sbjct: 85  HIYNPQYDDISPFLNMHRGEKAPGSVASAVKNHPFHGPSSRRT-EMAMM--FGREMFMEL 144

Query: 187 EFLQASFPGLSEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTLDIGDI 246
           E L  SFPGLS+QS+++VY AN  DLDAAIDML+ LENKH+ DFEY P+SLPD+LDIGDI
Sbjct: 145 ELLHESFPGLSDQSITEVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDI 204

Query: 247 SEPGFAAVGQPSFRTKNVANGASTSSRF 275
           SE GFA V QPSFR K+   G  TSSRF
Sbjct: 205 SESGFADVSQPSFRMKSANGGPGTSSRF 227

[Close]

BLAST of Sed0023915 vs. NCBI nr
Match: XP_004136335.1 (polyadenylate-binding protein-interacting protein 5 [Cucumis sativus] >KGN60127.1 hypothetical protein Csa_002673 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-59
Identity = 132/198 (66.67%), Postives = 152/198 (76.77%), Query Frame = 0


Query: 78  MKPLGSSLNPYATSYIPLSMREANKSPRPENSSVERMSVFPGYSGYAEHYMHNRQYEN-I 137
           MKP GSSLNP+ATSYIPLS R AN++   EN+S  R ++     GY+E  ++N  Y N I
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTS--RENIGANLPGYSEQCVYNPPYNNSI 60

Query: 138 SPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELLGREFSMDLEFLQASFPGL 197
           SPRLN+ HG+K+ VA G+AVKNH F G +SQ S++L EME+  RE +MD+E LQ SFPGL
Sbjct: 61  SPRLNMNHGKKASVA-GAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGL 120

Query: 198 SEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTLDIGDISEPGFAAVGQ 257
           SEQSL+DVY AN  DLDAAIDMLS LENKH  D EYDPESLPDTLDIGDISE GF  V Q
Sbjct: 121 SEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQ 180

Query: 258 PSFRTKNVANGASTSSRF 275
           PSFR KNVAN ASTSSRF
Sbjct: 181 PSFRMKNVANQASTSSRF 195

[Close]

BLAST of Sed0023915 vs. NCBI nr
Match: KAG6608180.1 (Translocon at the inner envelope membrane of chloroplasts 236, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 240.7 bits (613), Expect = 1.4e-59
Identity = 130/212 (61.32%), Postives = 160/212 (75.47%), Query Frame = 0


Query: 62   ICEKQGEITVSTVSGTMKPLGSSLNPYATSYIPLSMREANKSPRPENSSVERMSVFPGYS 121
            I   +G++ + +VSG MKP+GSSLNPYATSYIPLS REANK+  PENSS  R +V     
Sbjct: 2505 ISSPKGKVPIISVSGAMKPIGSSLNPYATSYIPLSKREANKTFIPENSS--RGNVGAVIP 2564

Query: 122  GYAEHYMHNRQYENISPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELLGRE 181
            GY+EH+++N QY++ISP LN+  GEK+P +V SAVKNH F GP S+ + E+A M   GRE
Sbjct: 2565 GYSEHHIYNPQYDDISPFLNMHRGEKAPGSVASAVKNHPFHGPSSRRT-EMAMM--FGRE 2624

Query: 182  FSMDLEFLQASFPGLSEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTL 241
              M+LE L  SFPGLS+QS+++VY AN  DLDAAIDML+ LENKH+ DFEY P+SLPD+L
Sbjct: 2625 MFMELELLHESFPGLSDQSITEVYFANKGDLDAAIDMLNQLENKHSADFEYPPQSLPDSL 2684

Query: 242  DIGDISEPGFAAVGQPSFRTKNVANGASTSSR 274
            DIGDISE GFA V QPSFR K+   G  TSSR
Sbjct: 2685 DIGDISESGFADVSQPSFRMKSSNGGPGTSSR 2711

[Close]

BLAST of Sed0023915 vs. ExPASy Swiss-Prot
Match: Q6NQH9 (Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3702 GN=CID6 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.8e-20
Identity = 76/198 (38.38%), Postives = 104/198 (52.53%), Query Frame = 0


Query: 78  MKPLGSSLNPYATSYIPLSMRE---ANKSPRPENSSVERMSVFPGYSGYAEHYMHNRQYE 137
           MK   S+LNPYA +Y+PLS RE    +  P  +    ++      Y GY    M + Q  
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKREGSLVDTKPVTQQHMQQQHHQQQPYYGYGVQGMGSYQGT 60

Query: 138 NISPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELLGREFSMDLEFLQASFP 197
            +SP+       KSP      V NH           +L + +L   E  MD+E+L A++P
Sbjct: 61  QMSPK-------KSP---SEMVYNH-----------QLKDEDL---EMDMDIEYLLATYP 120

Query: 198 GLSEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTLDIGDISEPGFAAV 257
           GLS++S++DVYLAN CDLDA I+ML+ LE       EY    LPDTLDIGD+ E     +
Sbjct: 121 GLSQESINDVYLANTCDLDATIEMLNQLEIYSTEAEEY----LPDTLDIGDVPE-----I 165

Query: 258 GQPSFRTKNVANGASTSS 273
              S + KN  + AS+SS
Sbjct: 181 ITESSKQKNDGSSASSSS 165

[Close]

BLAST of Sed0023915 vs. ExPASy Swiss-Prot
Match: Q9LYE5 (Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3702 GN=CID5 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.2e-13
Identity = 59/150 (39.33%), Postives = 87/150 (58.00%), Query Frame = 0


Query: 129 HNRQYENISPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMEL------LGREF 188
           H   Y  IS R++   G+   V    A K+ T    + + S+E+A  ++      L  + 
Sbjct: 11  HAASYVPISKRVDYGGGDDGLV---FAAKSPTVEVSMPKKSSEMAYKQIRDDDLDLEMDI 70

Query: 189 SMDLEFLQASFPGLSEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTLD 248
            MD+E+L  +F GLS++S++DVYLAN  DL+A I+ML+ LE  ++ + E   E+LP+TLD
Sbjct: 71  DMDIEYLLVTFSGLSQESITDVYLANGGDLEATIEMLNQLE-IYSTESE---ENLPETLD 130

Query: 249 IGDISEPGFAAVGQPSFRTKNVANGASTSS 273
           IGDISE G      PS  +K+    ASTSS
Sbjct: 131 IGDISESG------PS-TSKSTEVAASTSS 146

[Close]

BLAST of Sed0023915 vs. ExPASy Swiss-Prot
Match: O64843 (Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana OX=3702 GN=CID7 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 6.9e-04
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 186 LEFLQASFPGLSEQSLSDVYLANNCDLDAAIDMLSLLE-------NKHAPDFEYDPESL 238
           ++FL + FPG + +SL++VY AN CDL   I+ML+ LE       N++     Y P SL
Sbjct: 221 VDFLASQFPGFAAESLAEVYFANGCDLQLTIEMLTQLELQVDGGLNQNISPKTYAPPSL 279

[Close]

BLAST of Sed0023915 vs. ExPASy TrEMBL
Match: A0A5A7TBQ8 (Polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007180 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 135/216 (62.50%), Postives = 159/216 (73.61%), Query Frame = 0


Query: 59  SDLICEKQGEITVSTVSGTMKPLGSSLNPYATSYIPLSMREANKSPRPENSSVERMSVFP 118
           SD+  E   +I + + SG MKP GSSLNP+ATSYIPLS R AN++   EN+S  R ++  
Sbjct: 13  SDVALEGLDKIEIVSPSGEMKPHGSSLNPFATSYIPLSQRGANRTFIAENTS--RENIGA 72

Query: 119 GYSGYAEHYMHNRQYENISPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELL 178
              GY+E  ++     +ISPRLN+ HG+K+ VA  SAVKNH F G +SQ S++L+EME+ 
Sbjct: 73  NVPGYSEQCLYPPYNNSISPRLNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEIF 132

Query: 179 GREFSMDLEFLQASFPGLSEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLP 238
            RE +MDLE LQ SFPGLSEQSL+DVY AN  DLDAAIDMLS LENKH  D EYD ESLP
Sbjct: 133 DREVNMDLELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLP 192

Query: 239 DTLDIGDISEPGFAAVGQPSFRTKNVANGASTSSRF 275
           DTLDIGDISE GF  V QPSFR KNVAN ASTSSRF
Sbjct: 193 DTLDIGDISESGFVTVDQPSFRMKNVANQASTSSRF 226

[Close]

BLAST of Sed0023915 vs. ExPASy TrEMBL
Match: A0A0A0LHC3 (CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878960 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 5.4e-60
Identity = 132/198 (66.67%), Postives = 152/198 (76.77%), Query Frame = 0


Query: 78  MKPLGSSLNPYATSYIPLSMREANKSPRPENSSVERMSVFPGYSGYAEHYMHNRQYEN-I 137
           MKP GSSLNP+ATSYIPLS R AN++   EN+S  R ++     GY+E  ++N  Y N I
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTS--RENIGANLPGYSEQCVYNPPYNNSI 60

Query: 138 SPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELLGREFSMDLEFLQASFPGL 197
           SPRLN+ HG+K+ VA G+AVKNH F G +SQ S++L EME+  RE +MD+E LQ SFPGL
Sbjct: 61  SPRLNMNHGKKASVA-GAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGL 120

Query: 198 SEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTLDIGDISEPGFAAVGQ 257
           SEQSL+DVY AN  DLDAAIDMLS LENKH  D EYDPESLPDTLDIGDISE GF  V Q
Sbjct: 121 SEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQ 180

Query: 258 PSFRTKNVANGASTSSRF 275
           PSFR KNVAN ASTSSRF
Sbjct: 181 PSFRMKNVANQASTSSRF 195

[Close]

BLAST of Sed0023915 vs. ExPASy TrEMBL
Match: A0A1S3CR41 (polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo OX=3656 GN=LOC103503796 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 9.2e-60
Identity = 129/197 (65.48%), Postives = 149/197 (75.63%), Query Frame = 0


Query: 78  MKPLGSSLNPYATSYIPLSMREANKSPRPENSSVERMSVFPGYSGYAEHYMHNRQYENIS 137
           MKP GSSLNP+ATSYIPLS R AN++   EN+S  R ++     GY+E  ++     +IS
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIAENTS--RENIGANVPGYSEQCLYPPYNNSIS 60

Query: 138 PRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELLGREFSMDLEFLQASFPGLS 197
           PRLN+ HG+K+ VA  SAVKNH F G +SQ S++L+EME+  RE +MDLE LQ SFPGLS
Sbjct: 61  PRLNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEIFDREVNMDLELLQVSFPGLS 120

Query: 198 EQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTLDIGDISEPGFAAVGQP 257
           EQSL+DVY AN  DLDAAIDMLS LENKH  D EYD ESLPDTLDIGDISE GF  V QP
Sbjct: 121 EQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQP 180

Query: 258 SFRTKNVANGASTSSRF 275
           SFR KNVAN ASTSSRF
Sbjct: 181 SFRMKNVANQASTSSRF 195

[Close]

BLAST of Sed0023915 vs. ExPASy TrEMBL
Match: A0A6J1CJ15 (polyadenylate-binding protein-interacting protein 5-like OS=Momordica charantia OX=3673 GN=LOC111012041 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 3.5e-59
Identity = 130/198 (65.66%), Postives = 153/198 (77.27%), Query Frame = 0


Query: 78  MKPLGSSLNPYATSYIPLSMREANKSPRPENSSVERMSVFPGYSGYAEHYMHNRQYENIS 137
           MKPLGSSLNPYA SYIPLS REA+K+   ENSS  + S+   +SGY+EHYMHN  Y++IS
Sbjct: 1   MKPLGSSLNPYAASYIPLSKREADKNFIAENSS--KKSIGGNFSGYSEHYMHNPPYDSIS 60

Query: 138 PRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEM-ELLGREFSMDLEFLQASFPGL 197
           P  NLR GEK+P+AVGSA+KNH   G +SQH +E  EM E+  ++F +DLEFL+ASFPGL
Sbjct: 61  PNSNLRLGEKAPIAVGSAMKNHPSHGSLSQHKSEFNEMVEMFDKDFDLDLEFLKASFPGL 120

Query: 198 SEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFE-YDPESLPDTLDIGDISEPGFAAVG 257
           S+QSL+DVYLAN  D+DAAIDMLSLLENK     E Y PE LPD+LDIGDISE GFAA  
Sbjct: 121 SDQSLTDVYLANKGDVDAAIDMLSLLENKQPFGSEDYVPEGLPDSLDIGDISEYGFAADN 180

Query: 258 QPSFRTKNVANGASTSSR 274
           QPSF+ KNV   ASTS R
Sbjct: 181 QPSFKMKNVVGNASTSFR 196

[Close]

BLAST of Sed0023915 vs. ExPASy TrEMBL
Match: A0A6J1IVG0 (polyadenylate-binding protein-interacting protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111480970 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 6.6e-58
Identity = 127/198 (64.14%), Postives = 153/198 (77.27%), Query Frame = 0


Query: 78  MKPLGSSLNPYATSYIPLSMREANKSPRPENSSVERM-SVFPGYSGYAEHYMHNRQYENI 137
           MKP+GSSLNPYATSYIPLS REANK+  PENSS   + ++ PGYS   EH+++N QY++I
Sbjct: 1   MKPIGSSLNPYATSYIPLSKREANKTLIPENSSRGNIGAIIPGYS---EHHIYNPQYDDI 60

Query: 138 SPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELLGREFSMDLEFLQASFPGL 197
           SP LN+  GEK+P +V SAVKNH F GP S+ + E+A M   GRE  M+LE L  SFPGL
Sbjct: 61  SPFLNMHRGEKAPGSVASAVKNHPFHGPGSRRT-EMAMM--FGREMFMELELLHESFPGL 120

Query: 198 SEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTLDIGDISEPGFAAVGQ 257
           S+QS+++VY AN  DLDAAIDML+ LENKH+ DFEY P+SLPD+LDIGDISE GFA V Q
Sbjct: 121 SDQSITEVYFANKGDLDAAIDMLNQLENKHSADFEYAPQSLPDSLDIGDISESGFADVSQ 180

Query: 258 PSFRTKNVANGASTSSRF 275
           PSFR K+V  G  TSSRF
Sbjct: 181 PSFRMKSVNGGPGTSSRF 192

[Close]

BLAST of Sed0023915 vs. TAIR 10
Match: AT5G25540.1 (CTC-interacting domain 6 )

HSP 1 Score: 99.4 bits (246), Expect = 4.9e-21
Identity = 76/198 (38.38%), Postives = 104/198 (52.53%), Query Frame = 0


Query: 78  MKPLGSSLNPYATSYIPLSMRE---ANKSPRPENSSVERMSVFPGYSGYAEHYMHNRQYE 137
           MK   S+LNPYA +Y+PLS RE    +  P  +    ++      Y GY    M + Q  
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKREGSLVDTKPVTQQHMQQQHHQQQPYYGYGVQGMGSYQGT 60

Query: 138 NISPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMELLGREFSMDLEFLQASFP 197
            +SP+       KSP      V NH           +L + +L   E  MD+E+L A++P
Sbjct: 61  QMSPK-------KSP---SEMVYNH-----------QLKDEDL---EMDMDIEYLLATYP 120

Query: 198 GLSEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTLDIGDISEPGFAAV 257
           GLS++S++DVYLAN CDLDA I+ML+ LE       EY    LPDTLDIGD+ E     +
Sbjct: 121 GLSQESINDVYLANTCDLDATIEMLNQLEIYSTEAEEY----LPDTLDIGDVPE-----I 165

Query: 258 GQPSFRTKNVANGASTSS 273
              S + KN  + AS+SS
Sbjct: 181 ITESSKQKNDGSSASSSS 165

[Close]

BLAST of Sed0023915 vs. TAIR 10
Match: AT5G11440.1 (CTC-interacting domain 5 )

HSP 1 Score: 76.3 bits (186), Expect = 4.4e-14
Identity = 59/150 (39.33%), Postives = 87/150 (58.00%), Query Frame = 0


Query: 129 HNRQYENISPRLNLRHGEKSPVAVGSAVKNHTFRGPVSQHSNELAEMEL------LGREF 188
           H   Y  IS R++   G+   V    A K+ T    + + S+E+A  ++      L  + 
Sbjct: 11  HAASYVPISKRVDYGGGDDGLV---FAAKSPTVEVSMPKKSSEMAYKQIRDDDLDLEMDI 70

Query: 189 SMDLEFLQASFPGLSEQSLSDVYLANNCDLDAAIDMLSLLENKHAPDFEYDPESLPDTLD 248
            MD+E+L  +F GLS++S++DVYLAN  DL+A I+ML+ LE  ++ + E   E+LP+TLD
Sbjct: 71  DMDIEYLLVTFSGLSQESITDVYLANGGDLEATIEMLNQLE-IYSTESE---ENLPETLD 130

Query: 249 IGDISEPGFAAVGQPSFRTKNVANGASTSS 273
           IGDISE G      PS  +K+    ASTSS
Sbjct: 131 IGDISESG------PS-TSKSTEVAASTSS 146

[Close]

BLAST of Sed0023915 vs. TAIR 10
Match: AT2G26280.1 (CTC-interacting domain 7 )

HSP 1 Score: 46.2 bits (108), Expect = 4.9e-05
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 186 LEFLQASFPGLSEQSLSDVYLANNCDLDAAIDMLSLLE-------NKHAPDFEYDPESL 238
           ++FL + FPG + +SL++VY AN CDL   I+ML+ LE       N++     Y P SL
Sbjct: 221 VDFLASQFPGFAAESLAEVYFANGCDLQLTIEMLTQLELQVDGGLNQNISPKTYAPPSL 279

The following BLAST results are available for this feature:

BLAST of Sed0023915 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900178.1	3.1e-62	64.45	polyadenylate-binding protein-interacting protein 5-like [Benincasa hispida]	[more]
KAA0038789.1	5.3e-62	62.50	polyadenylate-binding protein-interacting protein 5 [Cucumis melo var. makuwa] >...	[more]
KAG7031819.1	6.5e-60	62.50	Polyadenylate-binding protein-interacting protein 6, partial [Cucurbita argyrosp...	[more]
XP_004136335.1	1.1e-59	66.67	polyadenylate-binding protein-interacting protein 5 [Cucumis sativus] >KGN60127....	[more]
KAG6608180.1	1.4e-59	61.32	Translocon at the inner envelope membrane of chloroplasts 236, partial [Cucurbit...	[more]

BLAST of Sed0023915 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQH9	6.8e-20	38.38	Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3...	[more]
Q9LYE5	6.2e-13	39.33	Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3...	[more]
O64843	6.9e-04	40.68	Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana OX=3...	[more]

BLAST of Sed0023915 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBQ8	2.6e-62	62.50	Polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo var. makuwa ...	[more]
A0A0A0LHC3	5.4e-60	66.67	CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878960 PE=4 SV...	[more]
A0A1S3CR41	9.2e-60	65.48	polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1CJ15	3.5e-59	65.66	polyadenylate-binding protein-interacting protein 5-like OS=Momordica charantia ...	[more]
A0A6J1IVG0	6.6e-58	64.14	polyadenylate-binding protein-interacting protein 6-like OS=Cucurbita maxima OX=...	[more]

BLAST of Sed0023915 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25540.1	4.9e-21	38.38	CTC-interacting domain 6	[more]
AT5G11440.1	4.4e-14	39.33	CTC-interacting domain 5	[more]
AT2G26280.1	4.9e-05	40.68	CTC-interacting domain 7	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.10		coord: 165..227 e-value: 2.4E-6 score: 29.0
None	No IPR available	PANTHER	PTHR37252:SF3	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6	coord: 78..273
IPR038981	Polyadenylate-binding protein-interacting protein 5/6	PANTHER	PTHR37252	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6	coord: 78..273
IPR003892	Ubiquitin system component CUE	PROSITE	PS51140	CUE	coord: 181..224 score: 11.549263
IPR041806	Polyadenylate-binding protein-interacting protein 5/6/7, CUE domain	CDD	cd14371	CUE_CID7_like	coord: 184..225 e-value: 5.36293E-15 score: 65.3588

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023915.1	Sed0023915.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043130	ubiquitin binding