Sed0023885 (gene) Chayote v1

Overview


Name	Sed0023885
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ubiquitin carboxyl-terminal hydrolase
Location	LG01: 59394471 .. 59395178 (+)
RNA-Seq Expression	Sed0023885
Synteny	Sed0023885

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACAGCAGGGACAATATTCTGATTCAGGACTAAACTCATATTCTGTTTCTCAAATGCATCACGTTCCCAGTCAAAGGATGGAACAAGACCACGCGGATCCCTTTGAAGGACGGTTGGAAGCCTTTACTCCTGAGAGAGAGCATTCATTTGTAGCTTCAAAAAATGAGGATCAATGGGGATGGGAAAGAGATGAGTCAAAGATGCCAAATTCTATGGACATGTTCAATGAAGGCAAGTGTTAATAGAGTGCATTGCATCTATCACTTGTTTAGCCATTACTTGGAGAATAAGTTAGTATTTTGTTATAAATAGAGTGGATTAGGTTAGAGTTTAGGCATCCAAATTATTGAATAGTTATTGAGTGATTTATTGTAGGGCTCAAGAGATTCTCTTGAGAAGGGAGGTTCCAAGTTCCTATCAAAACTTGGTTTATCTTTATTCTTTTATCTTTTGATATAATCTAGATCCTGGATCATATCAATTGGTATCAGAGCCGTTTCGATTCTTGGTTGTAGAGATGAATCAAGAACAACAAATTCGTTTCATTCTAGAAGAGTTGCAAAGTTTGATGGTCATGATTTCTTCTCATAGAAAAGAATTCAGAGAAGACCTAAAGGAGAGTTTCAATGACCTAAAACAATGTTTTAGGGAGGCAATTAGATTGGAAAAAACAATGACGGCTAGGGTTTTGACCCCGCCACCAT

mRNA sequence

ATGAGACAGCAGGGACAATATTCTGATTCAGGACTAAACTCATATTCTGTTTCTCAAATGCATCACGTTCCCAGTCAAAGGATGGAACAAGACCACGCGGATCCCTTTGAAGGACGGTTGGAAGCCTTTACTCCTGAGAGAGAGCATTCATTTGTAGCTTCAAAAAATGAGGATCAATGGGGATGGGAAAGAGATGAGTCAAAGATGCCAAATTCTATGGACATGTTCAATGAAGGCAAGTGTTAATAGAGTGCATTGCATCTATCACTTGTTTAGCCATTACTTGGAGAATAAGTTAGTATTTTGTTATAAATAGAGTGGATTAGGTTAGAGTTTAGGCATCCAAATTATTGAATAGTTATTGAGTGATTTATTGTAGGGCTCAAGAGATTCTCTTGAGAAGGGAGGTTCCAAGTTCCTATCAAAACTTGGTTTATCTTTATTCTTTTATCTTTTGATATAATCTAGATCCTGGATCATATCAATTGGTATCAGAGCCGTTTCGATTCTTGGTTGTAGAGATGAATCAAGAACAACAAATTCGTTTCATTCTAGAAGAGTTGCAAAGTTTGATGGTCATGATTTCTTCTCATAGAAAAGAATTCAGAGAAGACCTAAAGGAGAGTTTCAATGACCTAAAACAATGTTTTAGGGAGGCAATTAGATTGGAAAAAACAATGACGGCTAGGGTTTTGACCCCGCCACCAT

Coding sequence (CDS)

ATGAGACAGCAGGGACAATATTCTGATTCAGGACTAAACTCATATTCTGTTTCTCAAATGCATCACGTTCCCAGTCAAAGGATGGAACAAGACCACGCGGATCCCTTTGAAGGACGGTTGGAAGCCTTTACTCCTGAGAGAGAGCATTCATTTGTAGCTTCAAAAAATGAGGATCAATGGGGATGGGAAAGAGATGAGTCAAAGATGCCAAATTCTATGGACATGTTCAATGAAGGCAAGTGTTAA

Protein sequence

MRQQGQYSDSGLNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQWGWERDESKMPNSMDMFNEGKC

Homology

[Close]

BLAST of Sed0023885 vs. NCBI nr
Match: XP_022995120.1 (uncharacterized protein LOC111490759 [Cucurbita maxima] >XP_022995121.1 uncharacterized protein LOC111490759 [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 5.5e-31
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MRQQGQYSDSGLNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQW 60
          MRQQGQYSDSGLNSYS SQMHHVPSQR+EQ H DPFEGRLEAFTPERE+SFVASKNEDQW
Sbjct: 1  MRQQGQYSDSGLNSYSGSQMHHVPSQRVEQSHPDPFEGRLEAFTPERENSFVASKNEDQW 60

Query: 61 GWERDESKMPNSM--DMFNEGK 81
           WERDESKMPNSM   MFNEG+
Sbjct: 61 RWERDESKMPNSMASHMFNEGQ 82

[Close]

BLAST of Sed0023885 vs. NCBI nr
Match: XP_023532076.1 (uncharacterized protein LOC111794350 [Cucurbita pepo subsp. pepo] >XP_023532077.1 uncharacterized protein LOC111794350 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.1 bits (362), Expect = 5.5e-31
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MRQQGQYSDSGLNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQW 60
          MRQQGQYSDSGLNSYS SQMHHVPSQR+EQ H DPFEGRLEAFTPERE+SFVASKNEDQW
Sbjct: 1  MRQQGQYSDSGLNSYSGSQMHHVPSQRVEQSHPDPFEGRLEAFTPERENSFVASKNEDQW 60

Query: 61 GWERDESKMPNSM--DMFNEGK 81
           WERDESKMPNSM   MFNEG+
Sbjct: 61 RWERDESKMPNSMASHMFNEGQ 82

[Close]

BLAST of Sed0023885 vs. NCBI nr
Match: XP_022958684.1 (uncharacterized protein LOC111459838 [Cucurbita moschata] >XP_022958685.1 uncharacterized protein LOC111459838 [Cucurbita moschata])

HSP 1 Score: 144.1 bits (362), Expect = 5.5e-31
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MRQQGQYSDSGLNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQW 60
          MRQQGQYSDSGLNSYS SQMHHVPSQR+EQ H DPFEGRLEAFTPERE+SFVASKNEDQW
Sbjct: 1  MRQQGQYSDSGLNSYSGSQMHHVPSQRVEQSHPDPFEGRLEAFTPERENSFVASKNEDQW 60

Query: 61 GWERDESKMPNSM--DMFNEGK 81
           WERDESKMPNSM   MFNEG+
Sbjct: 61 RWERDESKMPNSMASHMFNEGQ 82

[Close]

BLAST of Sed0023885 vs. NCBI nr
Match: XP_031744069.1 (uncharacterized protein LOC101221687 isoform X2 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MRQQGQYSDSGLNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQW 60
          MRQQGQYSDSGL +YSVSQMHHVPSQ +EQ H DPFEGRLEAFTPEREHS+VASKNEDQW
Sbjct: 1  MRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 60

Query: 61 GWERDESKMPNSM--DMFNEGK 81
           WERDESKMPNSM   MFNEG+
Sbjct: 61 RWERDESKMPNSMTSHMFNEGQ 82

[Close]

BLAST of Sed0023885 vs. NCBI nr
Match: XP_008449603.1 (PREDICTED: uncharacterized protein LOC103491440 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MRQQGQYSDSGLNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQW 60
          MRQQGQYSDSGL +YSVSQMHHVPSQ +EQ H DPFEGRLEAFTPEREHS+VASKNEDQW
Sbjct: 1  MRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 60

Query: 61 GWERDESKMPNSM--DMFNEGK 81
           WERDESKMPNSM   MFNEG+
Sbjct: 61 RWERDESKMPNSMTSHMFNEGQ 82

[Close]

BLAST of Sed0023885 vs. ExPASy TrEMBL
Match: A0A6J1K145 (uncharacterized protein LOC111490759 OS=Cucurbita maxima OX=3661 GN=LOC111490759 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MRQQGQYSDSGLNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQW 60
          MRQQGQYSDSGLNSYS SQMHHVPSQR+EQ H DPFEGRLEAFTPERE+SFVASKNEDQW
Sbjct: 1  MRQQGQYSDSGLNSYSGSQMHHVPSQRVEQSHPDPFEGRLEAFTPERENSFVASKNEDQW 60

Query: 61 GWERDESKMPNSM--DMFNEGK 81
           WERDESKMPNSM   MFNEG+
Sbjct: 61 RWERDESKMPNSMASHMFNEGQ 82

[Close]

BLAST of Sed0023885 vs. ExPASy TrEMBL
Match: A0A6J1H5U1 (uncharacterized protein LOC111459838 OS=Cucurbita moschata OX=3662 GN=LOC111459838 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MRQQGQYSDSGLNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQW 60
          MRQQGQYSDSGLNSYS SQMHHVPSQR+EQ H DPFEGRLEAFTPERE+SFVASKNEDQW
Sbjct: 1  MRQQGQYSDSGLNSYSGSQMHHVPSQRVEQSHPDPFEGRLEAFTPERENSFVASKNEDQW 60

Query: 61 GWERDESKMPNSM--DMFNEGK 81
           WERDESKMPNSM   MFNEG+
Sbjct: 61 RWERDESKMPNSMASHMFNEGQ 82

[Close]

BLAST of Sed0023885 vs. ExPASy TrEMBL
Match: A0A5A7V7U3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001140 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.7e-31
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1   MRQQGQYSDSGLNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQW 60
           MRQQGQYSDSGL +YSVSQMHHVPSQ +EQ H DPFEGRLEAFTPEREHS+VASKNEDQW
Sbjct: 34  MRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 93

Query: 61  GWERDESKMPNSM--DMFNEGK 81
            WERDESKMPNSM   MFNEG+
Sbjct: 94  RWERDESKMPNSMTSHMFNEGQ 115

[Close]

BLAST of Sed0023885 vs. ExPASy TrEMBL
Match: A0A5D3BAP0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00380 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.7e-31
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1   MRQQGQYSDSGLNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQW 60
           MRQQGQYSDSGL +YSVSQMHHVPSQ +EQ H DPFEGRLEAFTPEREHS+VASKNEDQW
Sbjct: 21  MRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 80

Query: 61  GWERDESKMPNSM--DMFNEGK 81
            WERDESKMPNSM   MFNEG+
Sbjct: 81  RWERDESKMPNSMTSHMFNEGQ 102

[Close]

BLAST of Sed0023885 vs. ExPASy TrEMBL
Match: A0A0A0KI70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426920 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.7e-31
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MRQQGQYSDSGLNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQW 60
          MRQQGQYSDSGL +YSVSQMHHVPSQ +EQ H DPFEGRLEAFTPEREHS+VASKNEDQW
Sbjct: 1  MRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 60

Query: 61 GWERDESKMPNSM--DMFNEGK 81
           WERDESKMPNSM   MFNEG+
Sbjct: 61 RWERDESKMPNSMTSHMFNEGQ 82

[Close]

BLAST of Sed0023885 vs. TAIR 10
Match: AT5G22040.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-08
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1  MRQQGQYSDSG-LNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQ 60
          MR+QG ++DS   ++Y   Q+         QD    F+G+LEAFTPER+  +  S+ E Q
Sbjct: 1  MRRQGNFADSSPASAYGAGQI---------QDPHSDFQGQLEAFTPERDQPYSDSQAEGQ 60

Query: 61 WGWERDESKM--PNSMDMFNEGK 81
          W WERD   M  P +  ++NEG+
Sbjct: 61 WRWERDGPNMSRPMATAVYNEGQ 74

[Close]

BLAST of Sed0023885 vs. TAIR 10
Match: AT5G22040.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-08
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1  MRQQGQYSDSG-LNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQ 60
          MR+QG ++DS   ++Y   Q+         QD    F+G+LEAFTPER+  +  S+ E Q
Sbjct: 1  MRRQGNFADSSPASAYGAGQI---------QDPHSDFQGQLEAFTPERDQPYSDSQAEGQ 60

Query: 61 WGWERDESKM--PNSMDMFNEGK 81
          W WERD   M  P +  ++NEG+
Sbjct: 61 WRWERDGPNMSRPMATAVYNEGQ 74

[Close]

BLAST of Sed0023885 vs. TAIR 10
Match: AT5G22040.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. )

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-08
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1  MRQQGQYSDSG-LNSYSVSQMHHVPSQRMEQDHADPFEGRLEAFTPEREHSFVASKNEDQ 60
          MR+QG ++DS   ++Y   Q+         QD    F+G+LEAFTPER+  +  S+ E Q
Sbjct: 1  MRRQGNFADSSPASAYGAGQI---------QDPHSDFQGQLEAFTPERDQPYSDSQAEGQ 60

Query: 61 WGWERDESKM--PNSMDMFNEGK 81
          W WERD   M  P +  ++NEG+
Sbjct: 61 WRWERDGPNMSRPMATAVYNEGQ 74

The following BLAST results are available for this feature:

BLAST of Sed0023885 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995120.1	5.5e-31	87.80	uncharacterized protein LOC111490759 [Cucurbita maxima] >XP_022995121.1 uncharac...	[more]
XP_023532076.1	5.5e-31	87.80	uncharacterized protein LOC111794350 [Cucurbita pepo subsp. pepo] >XP_023532077....	[more]
XP_022958684.1	5.5e-31	87.80	uncharacterized protein LOC111459838 [Cucurbita moschata] >XP_022958685.1 unchar...	[more]
XP_031744069.1	1.6e-30	85.37	uncharacterized protein LOC101221687 isoform X2 [Cucumis sativus]	[more]
XP_008449603.1	1.6e-30	85.37	PREDICTED: uncharacterized protein LOC103491440 [Cucumis melo]	[more]

BLAST of Sed0023885 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0023885 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K145	2.6e-31	87.80	uncharacterized protein LOC111490759 OS=Cucurbita maxima OX=3661 GN=LOC111490759...	[more]
A0A6J1H5U1	2.6e-31	87.80	uncharacterized protein LOC111459838 OS=Cucurbita moschata OX=3662 GN=LOC1114598...	[more]
A0A5A7V7U3	7.7e-31	85.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BAP0	7.7e-31	85.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KI70	7.7e-31	85.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426920 PE=4 SV=1	[more]

BLAST of Sed0023885 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22040.1	4.1e-08	39.76	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G22040.2	4.1e-08	39.76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G22040.3	4.1e-08	39.76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR34210:SF1	SUBFAMILY NOT NAMED	coord: 1..75
None	No IPR available	PANTHER	PTHR34210	OS01G0252900 PROTEIN	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023885.1	Sed0023885.1	mRNA