Sed0023870 (gene) Chayote v1

Overview
NameSed0023870
Typegene
OrganismSechium edule (Chayote v1)
Descriptionzf-RVT domain-containing protein
LocationLG06: 9293633 .. 9296877 (-)
RNA-Seq ExpressionSed0023870
SyntenySed0023870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTGAAAGTGAAAGGGAAAAGACCTTCACTAGTAAAAGGAAGATGGAGTCTGATTTTGATAATGGTGGATTTGGAAAGAAGATACGTACTAGTGAAGGGGATGCTATTTCTAATAAGTTGGCGGTGGCTAATATTCAACCCCTCACGTATGAATATCATTCAAAATCAGCTGAATTTTACAAATTGTTTTGTGGTAGATAGTGATGGTTTGAGTGTTGGTCTTGTCTTATTATGGATGGATAATGTGGATTTGAATATTAGATCCTTTTTCCAAAAATCATATTGATTGTTGGATTATTGCTAACTCTTTTGGTTGGAAATTCACTGGGGTGTATGGAAATCCTATTACAGCTAAGAAATACTTGACTTGGGAGCTTATATCTAGAATTCATAATGGTGATGATGTGTCGTGGCTTATTGGTGGTGATTTTAATGAAGCTCTTTGGGCTAATGAGAAGAAAGAAGGTTCTAAGGATATTTCAATCTTTTATTTGCAATTTCATCAAATGATTGATGATCTTAGTCTTTAGGACTTAGGTTTCTCGGGTGAAATTTTTACTTGGTGTAATCGTTGGTCAAAGTGTGAGCCTATTTTAAGAGATTGGATAGATTTCTGGACAATGATGATTTTTGCATCCATTTTACTGGTTGTTGTGTTACTCATCTGGATTGGGCTGGCTCTAATCATCGTCCTATTTTTTTGAATCTTTTTTGTTTCTTTGCTGAGTTCAAACAAAGGAAGATGTATTCAGCGGTTTGAAGAATTTTGGTCTCATGATCCGACTTGTGAAGACATTATTCATGATGATTTGGTCCTTTCAGAGGGGTGACTCATCGAAAAATAGTTTTAAAATTCCCTTGCTCGTTGTATGAATTTTTACATTCTTGGGGTAAGAAGAAGAAGGAAAAATGAGATTCTATTTCTCGTCTAAAGATCCTTATTCAAGAAGAGTTTGCAAAGAAGGTCCCTTGATTTTAACAAAATTGCATTATAGGAAAAAAAGCTTGATGTAGACTTACTGACTAAGGAGAAGTATTGGAGGCAACGTTCTAGGGAGGATTGACTTAAATGGGGTGATCTCAATACCAAATGGTTCCATAAAAAAGCCTATATGCGGAAGTCTCAGAACTCTATTAGGAACATTTTGGATAATGCCCAATGGTTTAGAGAAGCTGCTGAGATTAAGGACATCTTTCAGAGGTATTTTGAGGACATGTTTAGATCTTCTAATCCTAGTGATAGTCAAATGGATAATGCTCTTTTTCATGTTCATTGTAAAGTAACTGATGAAATGAATTTTTGTTTGAATGCGCCTTATATTAAAGAGGAGATTAGATTGGCTTTTTTTCAGATGAATCCTTCTAAATCTCCTAGTTCAGATGATTTCCCTGCTATGTTTTATCAAAAGTATTGGCCTATTGTTAAAGACAAGACTGTTTCCTTCTGCCTGGATGTTTTAAATCAAGTTAAATCAATAAAAGAGATTAATCATACTGACATTGTTCTTATCCCAAAGAAGAATCATCCGGAAACAGTCAGTGAGATCTGACCGATCAGCTTATGTAATGTTAATTATAAGATTATTTCCAAATTCGTTGCTAATCGTTTGAAAAGTGTTTTGGGAAATATTATTTCTGAGTTTCAGAGTGCATTTTTCCCTGGTTGACTAATTTCTGATTGCCTTTTTGTCAGCTATGAATGCATTAATCATGTTATGACTAAAAGATCAGGTGGTCTTGGGCTTATGGCGCTGAAATTAGATATGTGCAAAACATATGATAGGGTGGAATGGTGTTTTCTTCGCAAGATGATGCTTAAATTGGGATTCTCTAATAGATGGGTGGAATTGATCATGGATTGTGTTTCAATAGTAAGCTTCTCAGTCCTTATTAATGGTGTGCTAGGTGATAATTTTTATCCTCAACGGGGGAAAGACAAGGTGACCCGATCTCTCCTTTTTTGTTTCTCCTTTGTTCTAAAAGTTTTTCTTGCATGATGGACCTTGCCATAAGATCAGGCCAGATTTTGGGTTGTAGAATAGCTTGTAGATGCCCGTCCATTTCACATCTTTTGTTTGCAGATGACTGTCTTTTATTTGGGAAAGCATTTATTAAAGAGGTGGTTGTGATTTGCAAAATTCTTAAATCTTATGAAGAAGCTTTCTGGGCAACGTGTTAATTTTAACAAATCAGCTGTTCTCTTTAGTCCAAATGTTAATCAGAACTCAAAGCTTTATTTGGCTAATTGTCTTCAAATGAATGTTATTGCTGATTTGGGGAAATATCTGGGCCTTTCTTCTCATTTTTCTAGAAACAAGACTAGAGATCTGAATTTTCTTAAAGATAAAATTCACAAAGCGATTGGTAGTTGGAAGATAAATTATTTCTATATTGTAGGGTGTGAAGTCTTAATAAAAGTTGTTATTCAGGCTATCCCAACTTATGTAATGTCATGTATTCAGATTCTTAAAGGTTTCTATCATCAAGTTTCTCAGCTTATGGTCCGATTCTGGTGGGGTTCTTCTCTTTCAAAATCCAAGATGCATTGGTGTGCTTGGAAAAATTTATGCATCCCCAAGGAAATGGGAGGTCTTGGATTTAGAAGTCTTGAAAAATTTAACTATGCACTTATTGCTAAGCAGGTTTGGAGATTAGTTCAATACCCTTCTTCATTAGCTGGAAGGTTTTTTCGTGGAAAGTATTTTTCTGATGGTAATATTCTTGATGCTCAGCTCAAAGCTAATTCATCCTATGTTTGGAAAGGGTTATTGTGGGGGAGAAATCTCCTTTTAAAAGGCCTTATAAAACACATTGGAAATGGTATTGATACTCTTACTTTCTCTTTTCCTTGGATTTCAAGAGAGAGAGGTTTCCAGCTTATCACTCGTTCGCAGTTTAATGACAGAAACTTGATGGTTGCTGATATCATAACAGAAGATGGTTGGTGGGACATTGATAAAATGAAAGAAATTTTATGGCTGGTTGATATTGATGATGTTTTAGCCATTCCTATATGTAAATCGCAAGAAGTCGATAGGTGGATTTGGCACTTTTCTCGTAATGGGGATTTCTCTGTTCGAGTGCTTATAAACTTGCGATGGAAAGAAATAAGCAGGAAGAGGTTTCTGGAAATAAAGCCATTAAAAAATGGTGGAGTTTGCTTTGGAAGATTAATGTTCCTAATAAAATCAAACTTTTCATTTGGAGGCTCTACAATGATATCTTCCCAATTTTCATAA

mRNA sequence

ATGGAGTTTGAAAGTGAAAGGGAAAAGACCTTCACTAGTAAAAGGAAGATGGAGTCTGATTTTGATAATGGTGGATTTGGAAAGAAGATACGTACTAGTGAAGGGGATGCTATTTCTAATAAGTTGGCGGTGGCTAATATTCAACCCCTCACAGAGAGAGGTTTCCAGCTTATCACTCGTTCGCAGTTTAATGACAGAAACTTGATGGTTGCTGATATCATAACAGAAGATGGTTGGTGGGACATTGATAAAATGAAAGAAATTTTATGGCTGGTTGATATTGATGATGTTTTAGCCATTCCTATATGTAAATCGCAAGAAGTCGATAGGTGGATTTGGCACTTTTCTCGTAATGGGGATTTCTCTGTTCGAGTGCTTATAAACTTGCGATGGAAAGAAATAAGCAGGAAGAGGTTTCTGGAAATAAAGCCATTAAAAAATGGTGGAGTTTGCTTTGGAAGATTAATGTTCCTAATAAAATCAAACTTTTCATTTGGAGGCTCTACAATGATATCTTCCCAATTTTCATAA

Coding sequence (CDS)

ATGGAGTTTGAAAGTGAAAGGGAAAAGACCTTCACTAGTAAAAGGAAGATGGAGTCTGATTTTGATAATGGTGGATTTGGAAAGAAGATACGTACTAGTGAAGGGGATGCTATTTCTAATAAGTTGGCGGTGGCTAATATTCAACCCCTCACAGAGAGAGGTTTCCAGCTTATCACTCGTTCGCAGTTTAATGACAGAAACTTGATGGTTGCTGATATCATAACAGAAGATGGTTGGTGGGACATTGATAAAATGAAAGAAATTTTATGGCTGGTTGATATTGATGATGTTTTAGCCATTCCTATATGTAAATCGCAAGAAGTCGATAGGTGGATTTGGCACTTTTCTCGTAATGGGGATTTCTCTGTTCGAGTGCTTATAAACTTGCGATGGAAAGAAATAAGCAGGAAGAGGTTTCTGGAAATAAAGCCATTAAAAAATGGTGGAGTTTGCTTTGGAAGATTAATGTTCCTAATAAAATCAAACTTTTCATTTGGAGGCTCTACAATGATATCTTCCCAATTTTCATAA

Protein sequence

MEFESEREKTFTSKRKMESDFDNGGFGKKIRTSEGDAISNKLAVANIQPLTERGFQLITRSQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVRVLINLRWKEISRKRFLEIKPLKNGGVCFGRLMFLIKSNFSFGGSTMISSQFS
Homology
[Close]
BLAST of Sed0023870 vs. NCBI nr
Match: XP_012851712.1 (PREDICTED: uncharacterized protein LOC105971405 [Erythranthe guttata])

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-07
Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 70  VADII-TEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVRV--- 129
           V+DII  E G WD+  + E+ W VD++ +LA+P+      DRWIWHFS++G+F+VR    
Sbjct: 781 VSDIIEPESGEWDLKILHEVFWPVDVERILAVPVGSVMAKDRWIWHFSKHGNFTVRSCYH 840

Query: 130 -LINLRWKEISRKR 139
            +++     +SR+R
Sbjct: 841 HILSCAMTMVSRRR 854

[Close]
BLAST of Sed0023870 vs. NCBI nr
Match: XP_012857846.1 (PREDICTED: uncharacterized protein LOC105977118 [Erythranthe guttata])

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-07
Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 0 

Query: 70  VADII-TEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDFSVRV--- 129
           V+DII  E G WD+  + E+ W VD++ +LA+P+      DRWIWHFS++G+F+VR    
Sbjct: 781 VSDIIEPESGEWDLKILHEVFWPVDVERILAVPVGSVMAKDRWIWHFSKHGNFTVRSCYH 840

Query: 130 -LINLRWKEISRKR 139
            +++     +SR+R
Sbjct: 841 HILSCAMTMVSRRR 854

[Close]
BLAST of Sed0023870 vs. NCBI nr
Match: XP_012837526.1 (PREDICTED: uncharacterized protein LOC105958069 [Erythranthe guttata])

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-06
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 52  ERGFQLITR----SQFNDRNLMVADIITED-GWWDIDKMKEILWLVDIDDVLAIPICKSQ 111
           E  F++ TR    S + DR   VADII +  G WD+  ++EI W +D   +L+IP+   +
Sbjct: 174 EGSFKMFTRRPIESAWPDR---VADIIDKSIGAWDVPIIEEIFWPIDRGRILSIPVGSRE 233

Query: 112 EVDRWIWHFSRNGDFSVR 125
             DRW+WH+S +G F+VR
Sbjct: 234 ASDRWVWHYSGSGKFTVR 248

[Close]
BLAST of Sed0023870 vs. NCBI nr
Match: XP_012849884.1 (PREDICTED: uncharacterized protein LOC105969657 [Erythranthe guttata])

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-06
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 63  FNDRNLMVADIITE-DGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDF 122
           F DR   V+DII +    W++D + E +W VDI+ + A+P+C     D+W+WH S+NG F
Sbjct: 489 FPDR---VSDIIDDSSNSWNMDLLNEFIWPVDIERISAVPLCNGLADDKWVWHCSKNGRF 548

Query: 123 SVR 125
           SV+
Sbjct: 549 SVK 548

[Close]
BLAST of Sed0023870 vs. NCBI nr
Match: XP_012853800.1 (PREDICTED: uncharacterized protein LOC105973324 [Erythranthe guttata])

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-05
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0 

Query: 55  FQLITR----SQFNDRNLMVADIITE-DGWWDIDKMKEILWLVDIDDVLAIPICKSQEVD 114
           FQ+ITR    S F D+   VAD+I      W+++ ++E  W +D + +L +PI      D
Sbjct: 706 FQIITRRPIYSSFPDK---VADLIDPLTNTWNVELIREHFWDIDQNRILEVPIGSVYAKD 765

Query: 115 RWIWHFSRNGDFSVR 125
           RW+WH+S+NG FSVR
Sbjct: 766 RWVWHYSKNGLFSVR 777

[Close]
BLAST of Sed0023870 vs. ExPASy TrEMBL
Match: A0A2P5BYC7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_199750 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 62  QFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGDF 121
           +  D +L+V+D+ ++ G WD +K+K ILWLVD  +VL +P+      D  IWHF  N + 
Sbjct: 3   KLEDHDLLVSDLTSKQGEWDKEKVKNILWLVDAKEVLNVPLSFEDCDDIPIWHFEENEEC 62

Query: 122 SVR 125
           SV+
Sbjct: 63  SVK 65

[Close]
BLAST of Sed0023870 vs. ExPASy TrEMBL
Match: A0A2I0A354 (Ribonuclease H protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017513 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 25/70 (35.71%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 55  FQLITRSQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWH 114
           FQ IT    N     + +++TEDG W+ +K+  ILW +D   +L +P C ++  D  IWH
Sbjct: 370 FQAITSPNPNLAATRIVELLTEDGSWNWEKINSILWSIDYHLILEMPPCSTKFDDALIWH 429

Query: 115 FSRNGDFSVR 125
           + + G +SV+
Sbjct: 430 WDKKGSYSVK 439

[Close]
BLAST of Sed0023870 vs. ExPASy TrEMBL
Match: A0A6J1BRN0 (uncharacterized protein LOC111004787 OS=Momordica charantia OX=3673 GN=LOC111004787 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-05
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 0 

Query: 55  FQLITRSQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWH 114
           F+ IT + F   ++ VAD+I  +G WD+  +  I    D D +L++P+     VD WIWH
Sbjct: 171 FRPIT-APFGPYDVKVADLINPNGQWDVHLISYIFCEEDRDLILSMPVSPYNSVDSWIWH 230

Query: 115 FSRNGDFSVRVLIN 129
           F + G ++V+ +IN
Sbjct: 231 FDKRGHYNVKSVIN 243

[Close]
BLAST of Sed0023870 vs. ExPASy TrEMBL
Match: A0A803P1Q0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-05
Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = 0 

Query: 38  ISNKLAVANIQPLTERG-FQLITRSQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDD 97
           + +KL ++       RG FQ ITR + ND +  V++ I   G WD  K++ +   +D+D 
Sbjct: 1   MEHKLGLSQTHGSRVRGLFQPITR-RIND-DCRVSEFILLSGTWDAGKLQWVFLPIDVDI 60

Query: 98  VLAIPICKSQEVDRWIWHFSRNGDFSVRVLINLRW 132
           +L+IP+ K +  D W WH+  +G ++V+   +L W
Sbjct: 61  ILSIPLAKREAKDGWCWHYDIDGIYTVKSGYSLAW 93

[Close]
BLAST of Sed0023870 vs. ExPASy TrEMBL
Match: A0A453F0C4 (zf-RVT domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-05
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 0 

Query: 61  SQFNDRNLMVADIITEDGWWDIDKMKEILWLVDIDDVLAIPICKSQEVDRWIWHFSRNGD 120
           S+  D  L+VAD+IT +  WD+DK+ +I    D   + AIP+C  Q  D W W   +NG 
Sbjct: 35  SKIIDPPLLVADLITAEASWDMDKLAQIFLPTDAQAIAAIPLCTRQVDDFWSWIHEKNGV 94

Query: 121 FSVR 125
           F+V+
Sbjct: 95  FTVQ 98

The following BLAST results are available for this feature:
BLAST of Sed0023870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_012851712.12.4e-0740.54PREDICTED: uncharacterized protein LOC105971405 [Erythranthe guttata][more]
XP_012857846.12.4e-0740.54PREDICTED: uncharacterized protein LOC105977118 [Erythranthe guttata][more]
XP_012837526.15.9e-0641.03PREDICTED: uncharacterized protein LOC105958069 [Erythranthe guttata][more]
XP_012849884.17.7e-0642.86PREDICTED: uncharacterized protein LOC105969657 [Erythranthe guttata][more]
XP_012853800.12.2e-0541.33PREDICTED: uncharacterized protein LOC105973324 [Erythranthe guttata][more]
BLAST of Sed0023870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0023870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5BYC71.1e-0541.27Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_199750 PE... [more]
A0A2I0A3541.4e-0535.71Ribonuclease H protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash017513 PE... [more]
A0A6J1BRN01.9e-0536.49uncharacterized protein LOC111004787 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A803P1Q01.9e-0532.63Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A453F0C44.1e-0540.63zf-RVT domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=2003... [more]
BLAST of Sed0023870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023870.1Sed0023870.1mRNA