Sed0023862 (gene) Chayote v1

Overview


Name	Sed0023862
Type	gene
Organism	Sechium edule (Chayote v1)
Description	la-related protein 6C
Location	LG01: 2516289 .. 2519064 (+)
RNA-Seq Expression	Sed0023862
Synteny	Sed0023862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGTTTCATATTGAGCAAAAAAATGAAGGCTTAATTTTACAGAAAAAAAGAGTGCAAAAAATGAGAGAGTAAATGTGGAGGGGAAGTTATTAGTTAGAGAGAAGAAGGCGATTCCGACCTGGAAATGGTCAGTCAAAATTCGAAACCAACGGCCATTTCTCACAAAACCCTACCGTCCTTTCAATCCATTCCCAAACCCATATATTTCTGCGACAAATCTGCGATGATCTACAGATTTCGGTTCCTAATCTCGAGGCGAAATCATAACCCACTTCGATTAAAGAAATGGGGGAACCGATTTCCGAAGAGAAGCTTGAAATGGAGCTCAAGGAGGGGTTCGGTGGCGACGGCGGCGGCGATGGCGGCGGTGACAGCAGCAGCAACGGTGGTTTGGGGTTCAAATTCAACCCCCAAGCGGCGGAGTTCTTCCCTAGGGCGCAGACCCAGATGCCCGTTACCGCCTATTTTCACCCCTATTTCCATTTTCCTACCTCTGATTGGTTCTTTGTTGGGGATCAAGAACCTGCTTATTTCATCCCCAATGCTGCCATTTCGCTTCCCAATTTCTCTAACAATGTTCGTTCTGATGATATTCAGCACAAGATTGTTAAACAGGTAATGCCCTCTTCTTTGTTATTTCTTCTTGCACCTATGAATTTGATATTGTTAATCTTAGGTTGATATAATTAAGATTTTCGGTTGATTTGTGATTTGACATGTTTCTCTGGTTGATATAATTAAATTTACTCTAATTCAGGCTCGTTTGGATCGATCGGTGATTTAACATGTTTCAACAATTATGCTTAATTTTTTCGCTTTGACTATACACTCATTTATGTTATTAAAAGTTGCAATCTAACCAAGATAAAGATCGAGCTTTCAAGTCCATACTTTTCAAAACTCATCATGTTCAGGGTGCTGTGAGAAAATTTTGTTTTTTTCATTCAATTTTACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAGCACAATAGTAAAGATCCTGATGGTTATGGTATATAGCCTTTGTAACACTATGTATTACATTACACGGATGCATCATTTCAACTTTTTGACATTCCTTTAACTGAATTCTATTTTGTCTTTCTCAATTCCCTTTTTGAAGTTCCAATTTCTGTTATTTCTTCCACCAAAAAAATAAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGTTCCTCTTCAAAGCTTGTAAGTTCTTAAGTATAACACTTAATTTTCTGCTCTTTCTGGAAAGATAAGAATAAACCATTCTGTTTTATTTTCTTGCATGATTGTAACTTATATCCGGTCTCTCCAAGGTTGTTAGTGCTGATGGGAAGAAAGTTAGGCGTAAGCATCCATTCACAGAAAAGGACAAAGAGGAACTGATGGTAAGATTAGTTATTGTACGAATGATGCCGAACGTTTCCCTTCCGCTGAGTGAGTAATATTTTGATTTTGGATTTGCAGTCCCGCACAGTCGTTGTTGAGAATTTACCCGACAATCACTCGCACCACAACCTGGAGAAAATATTTAGTGTGATTGGAAGGTAGTTTCATCAACATTGTTACTCTCTCACATTCTTTCTTTTATATGTTCAACTGTTCTATTTAGCATCATTCATTGGTGATATCTAATCAGTGTGAAGACCATCCGAATCTGTCATCCTCCGGAATCGAATCCCTGTTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGGTATTGTGAATCATGGTTTTAATGTATAACCTAGAAACTTACCCTCAAAATCATTTTCTCATTGTCACTTCATTTGTTTGAAGCTTCATGCACTTGTTGAATACGAGACTGTAGATTTTGCTGAAAGAGCGGTATGCATCTATTGTAAGTTATAACGCTGCTTGTATTTCAATCCTTTTATTTTGTCTTTCCCCTTTTTTTTTGTGCCTGCTAGGCTGAGAAGTTAAATGATGAGAGAAATTGGAGGAAAGGGCTTCGAGTAAGGTTATTGCTTCGACGCACGGTAAGTGTAATAAGATGATGTTAAGGGTAGCCTGCATTTTCATTAGTACATCTCTAATTATCATTTCTAAAAATGGATAGCCAAAATCGGTTCTGAAGACTCGAAAATCGGAATTTGAAAGTATTCTGGATGAAGATGATTCACCACCTTCTGTTTCCATCGAACCCGAGTCCTCGCTGTCAAATATCACTGAACAGATTGTCGATTGCAATGTAAGTACATTCGTTGAAAACTCTGTCGTCCTTGTTAGTATTATTTGATCAATAGCCAATATACATTGTTTTCTTTGATCAAAATGATTTGTGATTCCCAAATGACATGTGTCATATCTGTTTTACTAGTCTGAAGAGAACTCTACATCATCTAAGAAGGGTTGGGGTCGAGGCCGTGGGAAGGGCCGTGGACGAATCCACACCCAACTCGATCGTAGCTACAGCTTTCCGGTCTCAGCTATGCAATCGAGTAGCCAGGTTCTTTGCGAAGCATCTTCCAAACTCACTTCGAAGAGTCCGAGAATGCCCGATGGGACTAAAGGTTTCACCATGGGACGAGGCAAGCCGTTAACTTCTAAACCTGTATCTTGAATGAATAGAAATGTAGGAAAATATGTAGGGAAATTTCCTTATGATTGTTAAGTAGAGTGGAAGGAACTATGACAATTTTGCTGCTACGTATTCTTTTTATTTTTTGGTAATAAATTAATAATCGAGATGTTTGATAGCATTTTGTTTGGT

mRNA sequence

AAAAGGTTTCATATTGAGCAAAAAAATGAAGGCTTAATTTTACAGAAAAAAAGAGTGCAAAAAATGAGAGAGTAAATGTGGAGGGGAAGTTATTAGTTAGAGAGAAGAAGGCGATTCCGACCTGGAAATGGTCAGTCAAAATTCGAAACCAACGGCCATTTCTCACAAAACCCTACCGTCCTTTCAATCCATTCCCAAACCCATATATTTCTGCGACAAATCTGCGATGATCTACAGATTTCGGTTCCTAATCTCGAGGCGAAATCATAACCCACTTCGATTAAAGAAATGGGGGAACCGATTTCCGAAGAGAAGCTTGAAATGGAGCTCAAGGAGGGGTTCGGTGGCGACGGCGGCGGCGATGGCGGCGGTGACAGCAGCAGCAACGGTGGTTTGGGGTTCAAATTCAACCCCCAAGCGGCGGAGTTCTTCCCTAGGGCGCAGACCCAGATGCCCGTTACCGCCTATTTTCACCCCTATTTCCATTTTCCTACCTCTGATTGGTTCTTTGTTGGGGATCAAGAACCTGCTTATTTCATCCCCAATGCTGCCATTTCGCTTCCCAATTTCTCTAACAATGTTCGTTCTGATGATATTCAGCACAAGATTGTTAAACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAGCACAATAGTAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCTTCCACCAAAAAAATAAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGTTCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAGGCGTAAGCATCCATTCACAGAAAAGGACAAAGAGGAACTGATGTCCCGCACAGTCGTTGTTGAGAATTTACCCGACAATCACTCGCACCACAACCTGGAGAAAATATTTAGTGTGATTGGAAGTGTGAAGACCATCCGAATCTGTCATCCTCCGGAATCGAATCCCTGTTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGCTTCATGCACTTGTTGAATACGAGACTGTAGATTTTGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAATTGGAGGAAAGGGCTTCGAGTAAGGTTATTGCTTCGACGCACGCCAAAATCGGTTCTGAAGACTCGAAAATCGGAATTTGAAAGTATTCTGGATGAAGATGATTCACCACCTTCTGTTTCCATCGAACCCGAGTCCTCGCTGTCAAATATCACTGAACAGATTGTCGATTGCAATTCTGAAGAGAACTCTACATCATCTAAGAAGGGTTGGGGTCGAGGCCGTGGGAAGGGCCGTGGACGAATCCACACCCAACTCGATCGTAGCTACAGCTTTCCGGTCTCAGCTATGCAATCGAGTAGCCAGGTTCTTTGCGAAGCATCTTCCAAACTCACTTCGAAGAGTCCGAGAATGCCCGATGGGACTAAAGGTTTCACCATGGGACGAGGCAAGCCGTTAACTTCTAAACCTGTATCTTGAATGAATAGAAATGTAGGAAAATATGTAGGGAAATTTCCTTATGATTGTTAAGTAGAGTGGAAGGAACTATGACAATTTTGCTGCTACGTATTCTTTTTATTTTTTGGTAATAAATTAATAATCGAGATGTTTGATAGCATTTTGTTTGGT

Coding sequence (CDS)

ATGGGGGAACCGATTTCCGAAGAGAAGCTTGAAATGGAGCTCAAGGAGGGGTTCGGTGGCGACGGCGGCGGCGATGGCGGCGGTGACAGCAGCAGCAACGGTGGTTTGGGGTTCAAATTCAACCCCCAAGCGGCGGAGTTCTTCCCTAGGGCGCAGACCCAGATGCCCGTTACCGCCTATTTTCACCCCTATTTCCATTTTCCTACCTCTGATTGGTTCTTTGTTGGGGATCAAGAACCTGCTTATTTCATCCCCAATGCTGCCATTTCGCTTCCCAATTTCTCTAACAATGTTCGTTCTGATGATATTCAGCACAAGATTGTTAAACAGGTAGAATATCAGTTCAGTGACATGAGTCTTCTTGCAAATGAATCTCTTGCAAAGCACAATAGTAAAGATCCTGATGGTTATGTTCCAATTTCTGTTATTTCTTCCACCAAAAAAATAAAGTCCCTCTCAACCAACAACAATTTGATAGTTCAAGCTCTCCGTTCCTCTTCAAAGCTTGTTGTTAGTGCTGATGGGAAGAAAGTTAGGCGTAAGCATCCATTCACAGAAAAGGACAAAGAGGAACTGATGTCCCGCACAGTCGTTGTTGAGAATTTACCCGACAATCACTCGCACCACAACCTGGAGAAAATATTTAGTGTGATTGGAAGTGTGAAGACCATCCGAATCTGTCATCCTCCGGAATCGAATCCCTGTTGCTCTAAAGGTGAATTGTTTATCAGTAACAAGCTTCATGCACTTGTTGAATACGAGACTGTAGATTTTGCTGAAAGAGCGGCTGAGAAGTTAAATGATGAGAGAAATTGGAGGAAAGGGCTTCGAGTAAGGTTATTGCTTCGACGCACGCCAAAATCGGTTCTGAAGACTCGAAAATCGGAATTTGAAAGTATTCTGGATGAAGATGATTCACCACCTTCTGTTTCCATCGAACCCGAGTCCTCGCTGTCAAATATCACTGAACAGATTGTCGATTGCAATTCTGAAGAGAACTCTACATCATCTAAGAAGGGTTGGGGTCGAGGCCGTGGGAAGGGCCGTGGACGAATCCACACCCAACTCGATCGTAGCTACAGCTTTCCGGTCTCAGCTATGCAATCGAGTAGCCAGGTTCTTTGCGAAGCATCTTCCAAACTCACTTCGAAGAGTCCGAGAATGCCCGATGGGACTAAAGGTTTCACCATGGGACGAGGCAAGCCGTTAACTTCTAAACCTGTATCTTGA

Protein sequence

MGEPISEEKLEMELKEGFGGDGGGDGGGDSSSNGGLGFKFNPQAAEFFPRAQTQMPVTAYFHPYFHFPTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSVLKTRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGRGRIHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSKPVS

Homology

[Close]

BLAST of Sed0023862 vs. NCBI nr
Match: XP_022148536.1 (la-related protein 6C [Momordica charantia])

HSP 1 Score: 663.7 bits (1711), Expect = 1.0e-186
Identity = 351/419 (83.77%), Postives = 375/419 (89.50%), Query Frame = 0


Query: 1   MGEPISEEKL----EMELKEGFGGDGGGDGGGD--SSSNGGLGFKFNPQAAEFFPRAQTQ 60
           M +  SEEK+    EME KE   G+G GDG GD  S+S+G L FKFN QA EFFPR+QTQ
Sbjct: 1   MAQANSEEKVSETPEMETKEAVNGNGNGDGDGDGGSNSSGNLPFKFNAQAPEFFPRSQTQ 60

Query: 61  MPVTAYFHPYFHF-----PTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVK 120
           +PVT YFHPYFHF      TSDWFF+GDQEPAY IPNA I LPNFS NVRSDDIQ KIVK
Sbjct: 61  VPVTGYFHPYFHFLGGAPATSDWFFIGDQEPAYLIPNATIPLPNFSKNVRSDDIQQKIVK 120

Query: 121 QVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKL 180
           QVEYQFSDMSLLANESLAKH SKDPDGYVPISVISSTKK+KSLSTNNNLIVQALRSSS+L
Sbjct: 121 QVEYQFSDMSLLANESLAKHISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSRL 180

Query: 181 VVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHP 240
           VVS+DGKKVRRKHPFT+KDKEEL+SRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHP
Sbjct: 181 VVSSDGKKVRRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHP 240

Query: 241 PESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSV 300
           PESNPCCSKGELFISNKLHALVEYETV+ AERAAEKLNDERNWRKGLRVRLLLRR+PKSV
Sbjct: 241 PESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSV 300

Query: 301 LKTRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGR 360
           LKTRKSEF+SILDEDDSP  VSIE E SLSNITE IVDCNSEENST+SKKGWGRGRGKGR
Sbjct: 301 LKTRKSEFDSILDEDDSPSPVSIE-EPSLSNITELIVDCNSEENSTASKKGWGRGRGKGR 360

Query: 361 GRIHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSKPV 409
           GRIH+  DR  S PV+ +Q+SSQV+CEAS+KLTSKSPRMPDGTKGFTMGRGKPL+SKPV
Sbjct: 361 GRIHSHSDR--SVPVTQVQASSQVVCEASTKLTSKSPRMPDGTKGFTMGRGKPLSSKPV 416

[Close]

BLAST of Sed0023862 vs. NCBI nr
Match: XP_023007490.1 (la-related protein 6C [Cucurbita maxima])

HSP 1 Score: 662.9 bits (1709), Expect = 1.8e-186
Identity = 348/417 (83.45%), Postives = 366/417 (87.77%), Query Frame = 0


Query: 1   MGEPISEEKL----EMELKEGFGGDGGGDGGGDSSSNGGLGFKFNPQAAEFFPRAQTQMP 60
           M E  SEEK+    EME+KE       GDG G S+SNG L FKFN QA EFFPR+QTQMP
Sbjct: 1   MAEANSEEKVNENPEMEVKEAV----NGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMP 60

Query: 61  VTAYFHPYFHF-----PTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVKQV 120
           VT YFHPYFHF      TSDWFF+GDQEP Y IPN  I LPNFS N RS+DIQ KIVKQV
Sbjct: 61  VTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQV 120

Query: 121 EYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKLVV 180
           EYQFSDMSLLANESLAK+ SKDPDGYVPISVISSTKK+KSLSTNNNLIVQALRSSSKLVV
Sbjct: 121 EYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVV 180

Query: 181 SADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240
           SADGKKV+RKHPFT+KDKEEL+SRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE
Sbjct: 181 SADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240

Query: 241 SNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSVLK 300
           SNPCCSKGELFISNKLHALVEYETV+ A+RAAEKLNDERNWRKGLRVRLLLRR+PKSVLK
Sbjct: 241 SNPCCSKGELFISNKLHALVEYETVELADRAAEKLNDERNWRKGLRVRLLLRRSPKSVLK 300

Query: 301 TRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGRGR 360
           TRKSEFESILDEDDSP  VSIE ES  SNI E I D +SEENSTSSKKGWGRGRGKGRGR
Sbjct: 301 TRKSEFESILDEDDSPSPVSIEQESPQSNIAELITDFSSEENSTSSKKGWGRGRGKGRGR 360

Query: 361 IHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSKPV 409
           +H  LDRSYS PV+AMQSSSQ+LCEASSKLTSKSPRMPDGTKGFTMGRGKPL SK V
Sbjct: 361 VHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSV 413

[Close]

BLAST of Sed0023862 vs. NCBI nr
Match: XP_023533918.1 (la-related protein 6C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 662.1 bits (1707), Expect = 3.0e-186
Identity = 348/417 (83.45%), Postives = 365/417 (87.53%), Query Frame = 0


Query: 1   MGEPISEEKL----EMELKEGFGGDGGGDGGGDSSSNGGLGFKFNPQAAEFFPRAQTQMP 60
           M E  SEEK+    EME+KE       GDG G S+SNG L FKFN QA EFFPR+QTQMP
Sbjct: 1   MAEANSEEKVNENPEMEVKEAV----NGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMP 60

Query: 61  VTAYFHPYFHF-----PTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVKQV 120
           VT YFHPYFHF      TSDWFF+GDQEP Y IPN  I LPNFS N RS+DIQ KIVKQV
Sbjct: 61  VTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQV 120

Query: 121 EYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKLVV 180
           EYQFSDMSLLANESLAK+ SKDPDGYVPISVISSTKK+KSLSTNNNLIVQALRSSSKLVV
Sbjct: 121 EYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVV 180

Query: 181 SADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240
           SADGKKV+RKHPFT+KDKEEL+SRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE
Sbjct: 181 SADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240

Query: 241 SNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSVLK 300
           SNPCCSKGELFISNKLHALVEYETV+ AERAAEKLNDERNWRKGLRVRLLLRR+PKSVLK
Sbjct: 241 SNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLK 300

Query: 301 TRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGRGR 360
           TRKSEFESILDEDDSP  VSIE ES  SNI E   D +SEENSTSSKKGWGRGRGKGRGR
Sbjct: 301 TRKSEFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGR 360

Query: 361 IHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSKPV 409
           +H  LDRSYS PV+AMQSSSQ+LCEASSKLTSKSPRMPDGTKGFTMGRGKPL SK V
Sbjct: 361 VHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSV 413

[Close]

BLAST of Sed0023862 vs. NCBI nr
Match: KAG6605122.1 (La-related protein 6C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 661.8 bits (1706), Expect = 3.9e-186
Identity = 348/415 (83.86%), Postives = 364/415 (87.71%), Query Frame = 0


Query: 1   MGEPISEEKL----EMELKEGFGGDGGGDGGGDSSSNGGLGFKFNPQAAEFFPRAQTQMP 60
           M E  SEEK+    EME+KE       GDG G S+SNG L FKFN QA EFFPR+QTQMP
Sbjct: 1   MAEANSEEKVNENPEMEVKEAV----NGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMP 60

Query: 61  VTAYFHPYFHF-----PTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVKQV 120
           VT YFHPYFHF      TSDWFF+GDQEP Y IPN  I LPNFS N RS+DIQ KIVKQV
Sbjct: 61  VTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQV 120

Query: 121 EYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKLVV 180
           EYQFSDMSLLANESLAK+ SKDPDGYVPISVISSTKK+KSLSTNNNLIVQALRSSSKLVV
Sbjct: 121 EYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVV 180

Query: 181 SADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240
           SADGKKVRRKHPFT+KDKEEL+SRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE
Sbjct: 181 SADGKKVRRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240

Query: 241 SNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSVLK 300
           SNPCCSKGELFISNKLHALVEYETV+ AERAAEKLNDERNWRKGLRVRLLLRR+PKSVLK
Sbjct: 241 SNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLK 300

Query: 301 TRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGRGR 360
           TRKSEFESILDEDDSP  VSIE ES  SNI E   D +SEENSTSSKKGWGRGRGKGRGR
Sbjct: 301 TRKSEFESILDEDDSPSPVSIEQESLQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGR 360

Query: 361 IHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSK 407
           +H  LDRSYS PV+AMQSSSQ+LCEASSKLTSKSPRMPDGTKGFTMGRGKPL SK
Sbjct: 361 VHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSK 411

[Close]

BLAST of Sed0023862 vs. NCBI nr
Match: XP_022948148.1 (la-related protein 6C [Cucurbita moschata])

HSP 1 Score: 661.0 bits (1704), Expect = 6.7e-186
Identity = 347/417 (83.21%), Postives = 365/417 (87.53%), Query Frame = 0


Query: 1   MGEPISEEKL----EMELKEGFGGDGGGDGGGDSSSNGGLGFKFNPQAAEFFPRAQTQMP 60
           M E  SEEK+    EM++KE       GDG G S+SNG L FKFN QA EFFPR+QTQMP
Sbjct: 1   MAEANSEEKVNENPEMDVKEAV----NGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMP 60

Query: 61  VTAYFHPYFHF-----PTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVKQV 120
           VT YFHPYFHF      TSDWFF+GDQEP Y IPN  I LPNFS N RS+DIQ KIVKQV
Sbjct: 61  VTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQV 120

Query: 121 EYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKLVV 180
           EYQFSDMSLLANESLAK+ SKDPDGYVPISVISSTKK+KSLSTNNNLIVQALRSSSKLVV
Sbjct: 121 EYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVV 180

Query: 181 SADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240
           SADGKKV+RKHPFT+KDKEEL+SRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE
Sbjct: 181 SADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240

Query: 241 SNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSVLK 300
           SNPCCSKGELFISNKLHALVEYETV+ AERAAEKLNDERNWRKGLRVRLLLRR+PKSVLK
Sbjct: 241 SNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLK 300

Query: 301 TRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGRGR 360
           TRKSEFESILDEDDSP  VSIE ES  SNI E   D +SEENSTSSKKGWGRGRGKGRGR
Sbjct: 301 TRKSEFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGR 360

Query: 361 IHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSKPV 409
           +H  LDRSYS PV+AMQSSSQ+LCEASSKLTSKSPRMPDGTKGFTMGRGKPL SK V
Sbjct: 361 VHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSV 413

[Close]

BLAST of Sed0023862 vs. ExPASy Swiss-Prot
Match: Q9LHL3 (La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 5.3e-101
Identity = 218/434 (50.23%), Postives = 279/434 (64.29%), Query Frame = 0


Query: 25  DGGGDSSSNGGLGFKFNPQAAEFFPRAQTQ------MPVTAYFHPYFHF----------- 84
           DGGG SS      FKFN QA EF PR+ T        PV+ YF+P FH+           
Sbjct: 20  DGGGGSSGAQATAFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCFHYNGGCIGGCGGG 79

Query: 85  -----------PTSDWFFVGDQEP------------AYFIPNAAISLP------NFSNNV 144
                       +SDW +VG  +P            A++I N A+  P      + S N+
Sbjct: 80  VCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKNL 139

Query: 145 RSDDIQHKIVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNL 204
            SDD++ KIVKQVEYQF+DMSLLANES++KH SKDP+GYVP+S I+STKKIK+L++N++L
Sbjct: 140 LSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHL 199

Query: 205 IVQALRSSSKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVI 264
           +  ALRSSSKLVVS DGKKV+R   FT++D+EEL  RTVV ENLPD+HS+ NLEKIF V+
Sbjct: 200 VSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVV 259

Query: 265 GSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRV 324
           G+VK IRICHPPESN    KG+  +SNK+HAL+EY+    A++A EKLNDERNWRKGLRV
Sbjct: 260 GNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLRV 319

Query: 325 RLLLRRTPKSVLKTRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSK 384
           RLLLR +PKSVLK R++ F+ IL +D+ P   S E +S   ++TE  +D + ++N+    
Sbjct: 320 RLLLRCSPKSVLKNRRN-FDGILIDDELPSYESGE-DSPRLHLTESQLDNDGDDNNVGGL 379

Query: 385 KGWGRGRGKGRGRIHTQL-----DRSYSFPVSAMQSSSQVLCEASS--KLTSKSPRMPDG 406
             WG+GRGKGRGR           RS+   +        +    SS  K  +K PRMPDG
Sbjct: 380 --WGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESSSPKTATKGPRMPDG 439

[Close]

BLAST of Sed0023862 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 210.7 bits (535), Expect = 3.1e-53
Identity = 143/370 (38.65%), Postives = 196/370 (52.97%), Query Frame = 0


Query: 87  AAISLPNFSNNVRSDDIQHKIVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISST 146
           A++S+ +    +  D IQ KIV QVEY FSD++L   + L +   KDP+GYVPI V++S 
Sbjct: 179 ASVSIDS-KTGLPEDSIQ-KIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASF 238

Query: 147 KKIKSLSTNNNLIVQALRSSSKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNH 206
           KKIK++  NN+ +   L++S+KL VS DGKKVRR  P TE   EEL SR +V ENLP++H
Sbjct: 239 KKIKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDH 298

Query: 207 SHHNLEKIFSVIGSVKTIRICH--------PPESNPCCSKGELFISNKLHALVEYETVDF 266
            + NL KIFS +GSVK IR C         PP +           SNK+HA VEYE V+ 
Sbjct: 299 CYQNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVEL 358

Query: 267 AERAAEKLNDERNWRKGLRVRLLLRRTPKSVL----KTRKSEFESILDEDDSPPSVSIEP 326
           AERA  +L++  NWR GL+VRL+L+   K       + RK     +  E+D   +   +P
Sbjct: 359 AERAVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQP 418

Query: 327 ESSLSNITEQIVDCNSE----------------ENSTSSKKGWGRGRGKGRGRIHTQLDR 386
                 I +Q  DC+ E                E +   +KG  RGRGKGRGR     ++
Sbjct: 419 ------IEKQSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQ 478

Query: 387 SYSFPVSAMQSSS-------------QVLCEASS------------KLTSKSPRMPDGTK 404
           + +   S  Q+ +             QV  + S+            K     PRMPDGT+
Sbjct: 479 NQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTR 538

[Close]

BLAST of Sed0023862 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.4e-40
Identity = 117/314 (37.26%), Postives = 171/314 (54.46%), Query Frame = 0


Query: 101 DDIQHKIVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIV 160
           D++  KI++QVEY FSD +L  ++ L     ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 161 QALRSSSKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGS 220
            AL+ SS LVVSAD KKV+R  P  E    ++   TV+VENLP++HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 221 VKTIRICHP--PESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRV 280
           +K++ IC P   E +    K E FI  +LHA VEYETV+ AE+AA  LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 281 RLLLRRTPKSVLKTRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVD---------CN 340
           +LL +   K     R+     +  E D+   V  +     +  T +  +          +
Sbjct: 281 KLLEQAAGK--FAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQNHRLHHSDNPAD 340

Query: 341 SEENSTSSKKGWGRGRGKGRGRIHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMP 400
            +  +    K   +GR  G+GR       +     +A  SS               PRMP
Sbjct: 341 DDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMP 400

Query: 401 DGTKGFTMGRGKPL 404
           DGT+GFTMGRGK +
Sbjct: 401 DGTRGFTMGRGKAI 410

[Close]

BLAST of Sed0023862 vs. ExPASy Swiss-Prot
Match: Q05CL8 (La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-18
Identity = 62/162 (38.27%), Postives = 92/162 (56.79%), Query Frame = 0


Query: 107 IVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSS 166
           I KQV++ F D +L  ++ L +   K  DGYV IS++ S  K+K L+T+  LI +AL+SS
Sbjct: 32  IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 91

Query: 167 SKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRI 226
           S + +  +G ++RRK P  E+ K+E   RTV VE LP N +H  +E++F   G+V  I I
Sbjct: 92  SVVELDLEGTRIRRKKPLGERPKDE-EERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 151

Query: 227 CHPPESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLND 269
            H   +             K  A VE+ET + A +A E LN+
Sbjct: 152 PHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNN 182

[Close]

BLAST of Sed0023862 vs. ExPASy Swiss-Prot
Match: Q4G0J3 (La-related protein 7 OS=Homo sapiens OX=9606 GN=LARP7 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.3e-18
Identity = 62/162 (38.27%), Postives = 91/162 (56.17%), Query Frame = 0


Query: 107 IVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSS 166
           I KQV++ F D +L  +  L +   K  DGYV IS++ S  K+K L+T+  LI +ALRSS
Sbjct: 38  IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSS 97

Query: 167 SKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRI 226
           + + +  +G ++RRK P  E+ K+E   RTV VE LP N +H  +E++F   G+V  I I
Sbjct: 98  AVVELDLEGTRIRRKKPLGERPKDE-DERTVYVELLPKNVNHSWIERVFGKCGNVVYISI 157

Query: 227 CHPPESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLND 269
            H   +             K  A VE+ET + A +A E LN+
Sbjct: 158 PHYKSTG----------DPKGFAFVEFETKEQAAKAIEFLNN 188

[Close]

BLAST of Sed0023862 vs. ExPASy TrEMBL
Match: A0A6J1D5P1 (la-related protein 6C OS=Momordica charantia OX=3673 GN=LOC111017163 PE=4 SV=1)

HSP 1 Score: 663.7 bits (1711), Expect = 5.0e-187
Identity = 351/419 (83.77%), Postives = 375/419 (89.50%), Query Frame = 0


Query: 1   MGEPISEEKL----EMELKEGFGGDGGGDGGGD--SSSNGGLGFKFNPQAAEFFPRAQTQ 60
           M +  SEEK+    EME KE   G+G GDG GD  S+S+G L FKFN QA EFFPR+QTQ
Sbjct: 1   MAQANSEEKVSETPEMETKEAVNGNGNGDGDGDGGSNSSGNLPFKFNAQAPEFFPRSQTQ 60

Query: 61  MPVTAYFHPYFHF-----PTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVK 120
           +PVT YFHPYFHF      TSDWFF+GDQEPAY IPNA I LPNFS NVRSDDIQ KIVK
Sbjct: 61  VPVTGYFHPYFHFLGGAPATSDWFFIGDQEPAYLIPNATIPLPNFSKNVRSDDIQQKIVK 120

Query: 121 QVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKL 180
           QVEYQFSDMSLLANESLAKH SKDPDGYVPISVISSTKK+KSLSTNNNLIVQALRSSS+L
Sbjct: 121 QVEYQFSDMSLLANESLAKHISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSRL 180

Query: 181 VVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHP 240
           VVS+DGKKVRRKHPFT+KDKEEL+SRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHP
Sbjct: 181 VVSSDGKKVRRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHP 240

Query: 241 PESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSV 300
           PESNPCCSKGELFISNKLHALVEYETV+ AERAAEKLNDERNWRKGLRVRLLLRR+PKSV
Sbjct: 241 PESNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSV 300

Query: 301 LKTRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGR 360
           LKTRKSEF+SILDEDDSP  VSIE E SLSNITE IVDCNSEENST+SKKGWGRGRGKGR
Sbjct: 301 LKTRKSEFDSILDEDDSPSPVSIE-EPSLSNITELIVDCNSEENSTASKKGWGRGRGKGR 360

Query: 361 GRIHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSKPV 409
           GRIH+  DR  S PV+ +Q+SSQV+CEAS+KLTSKSPRMPDGTKGFTMGRGKPL+SKPV
Sbjct: 361 GRIHSHSDR--SVPVTQVQASSQVVCEASTKLTSKSPRMPDGTKGFTMGRGKPLSSKPV 416

[Close]

BLAST of Sed0023862 vs. ExPASy TrEMBL
Match: A0A6J1L340 (la-related protein 6C OS=Cucurbita maxima OX=3661 GN=LOC111499965 PE=4 SV=1)

HSP 1 Score: 662.9 bits (1709), Expect = 8.5e-187
Identity = 348/417 (83.45%), Postives = 366/417 (87.77%), Query Frame = 0


Query: 1   MGEPISEEKL----EMELKEGFGGDGGGDGGGDSSSNGGLGFKFNPQAAEFFPRAQTQMP 60
           M E  SEEK+    EME+KE       GDG G S+SNG L FKFN QA EFFPR+QTQMP
Sbjct: 1   MAEANSEEKVNENPEMEVKEAV----NGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMP 60

Query: 61  VTAYFHPYFHF-----PTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVKQV 120
           VT YFHPYFHF      TSDWFF+GDQEP Y IPN  I LPNFS N RS+DIQ KIVKQV
Sbjct: 61  VTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQV 120

Query: 121 EYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKLVV 180
           EYQFSDMSLLANESLAK+ SKDPDGYVPISVISSTKK+KSLSTNNNLIVQALRSSSKLVV
Sbjct: 121 EYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVV 180

Query: 181 SADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240
           SADGKKV+RKHPFT+KDKEEL+SRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE
Sbjct: 181 SADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240

Query: 241 SNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSVLK 300
           SNPCCSKGELFISNKLHALVEYETV+ A+RAAEKLNDERNWRKGLRVRLLLRR+PKSVLK
Sbjct: 241 SNPCCSKGELFISNKLHALVEYETVELADRAAEKLNDERNWRKGLRVRLLLRRSPKSVLK 300

Query: 301 TRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGRGR 360
           TRKSEFESILDEDDSP  VSIE ES  SNI E I D +SEENSTSSKKGWGRGRGKGRGR
Sbjct: 301 TRKSEFESILDEDDSPSPVSIEQESPQSNIAELITDFSSEENSTSSKKGWGRGRGKGRGR 360

Query: 361 IHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSKPV 409
           +H  LDRSYS PV+AMQSSSQ+LCEASSKLTSKSPRMPDGTKGFTMGRGKPL SK V
Sbjct: 361 VHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSV 413

[Close]

BLAST of Sed0023862 vs. ExPASy TrEMBL
Match: A0A6J1G8K6 (la-related protein 6C OS=Cucurbita moschata OX=3662 GN=LOC111451813 PE=4 SV=1)

HSP 1 Score: 661.0 bits (1704), Expect = 3.2e-186
Identity = 347/417 (83.21%), Postives = 365/417 (87.53%), Query Frame = 0


Query: 1   MGEPISEEKL----EMELKEGFGGDGGGDGGGDSSSNGGLGFKFNPQAAEFFPRAQTQMP 60
           M E  SEEK+    EM++KE       GDG G S+SNG L FKFN QA EFFPR+QTQMP
Sbjct: 1   MAEANSEEKVNENPEMDVKEAV----NGDGVGSSNSNGNLSFKFNAQAPEFFPRSQTQMP 60

Query: 61  VTAYFHPYFHF-----PTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVKQV 120
           VT YFHPYFHF      TSDWFF+GDQEP Y IPN  I LPNFS N RS+DIQ KIVKQV
Sbjct: 61  VTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNARSEDIQQKIVKQV 120

Query: 121 EYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKLVV 180
           EYQFSDMSLLANESLAK+ SKDPDGYVPISVISSTKK+KSLSTNNNLIVQALRSSSKLVV
Sbjct: 121 EYQFSDMSLLANESLAKNISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLVV 180

Query: 181 SADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240
           SADGKKV+RKHPFT+KDKEEL+SRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE
Sbjct: 181 SADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPPE 240

Query: 241 SNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSVLK 300
           SNPCCSKGELFISNKLHALVEYETV+ AERAAEKLNDERNWRKGLRVRLLLRR+PKSVLK
Sbjct: 241 SNPCCSKGELFISNKLHALVEYETVELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVLK 300

Query: 301 TRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGRGR 360
           TRKSEFESILDEDDSP  VSIE ES  SNI E   D +SEENSTSSKKGWGRGRGKGRGR
Sbjct: 301 TRKSEFESILDEDDSPSPVSIEQESPQSNIAELTTDFSSEENSTSSKKGWGRGRGKGRGR 360

Query: 361 IHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSKPV 409
           +H  LDRSYS PV+AMQSSSQ+LCEASSKLTSKSPRMPDGTKGFTMGRGKPL SK V
Sbjct: 361 VHNHLDRSYSLPVTAMQSSSQILCEASSKLTSKSPRMPDGTKGFTMGRGKPLNSKSV 413

[Close]

BLAST of Sed0023862 vs. ExPASy TrEMBL
Match: A0A6J1L529 (la-related protein 6C-like OS=Cucurbita maxima OX=3661 GN=LOC111499964 PE=4 SV=1)

HSP 1 Score: 647.1 bits (1668), Expect = 4.8e-182
Identity = 339/418 (81.10%), Postives = 366/418 (87.56%), Query Frame = 0


Query: 1   MGEPISEEKL----EME-LKEGFGGDGGGDGGGDSSSNGGLGFKFNPQAAEFFPRAQTQM 60
           M E   E+K+    EME +K+   GD    G G S+SNG L FKFN QA EFFPR+QTQM
Sbjct: 1   MAEANPEKKVNSNPEMEVVKQAVNGDA---GVGSSTSNGDLSFKFNAQAPEFFPRSQTQM 60

Query: 61  PVTAYFHPYFHF-----PTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVKQ 120
           PV+ YFHPYFHF      TSDWFF+GDQEP Y IPN  I LPNFS N RSDDI  K++KQ
Sbjct: 61  PVSGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLIKQ 120

Query: 121 VEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKLV 180
           VEYQFSDMSLLANESLAK  SKDPDGYVPISVISSTKK+KSLSTNNNLIVQALRSSSKLV
Sbjct: 121 VEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLV 180

Query: 181 VSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPP 240
           VSADGKKV+RKHPFT+KDKEEL+SRTVVVENLPDNHSHHNLEKIFSVIGSVKT+RICHPP
Sbjct: 181 VSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICHPP 240

Query: 241 ESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSVL 300
           ESNPCCSKGELFISNKLHALVEYET + AERAAEKLNDERNWRKGLRVRLLLRR+PKSVL
Sbjct: 241 ESNPCCSKGELFISNKLHALVEYETAELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVL 300

Query: 301 KTRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGRG 360
           KTRKS+F+ ILDEDDSP +VS E ESSL NITE I DC+SEENSTS+KKGWGRGRGKGRG
Sbjct: 301 KTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKGRG 360

Query: 361 RIHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSKPV 409
           RIH+ LDRS S PV+AMQSSSQV+CEASSKLT+KSPRMPDGTKGFTMGRGKPL+SKPV
Sbjct: 361 RIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 415

[Close]

BLAST of Sed0023862 vs. ExPASy TrEMBL
Match: A0A6J1G8M9 (la-related protein 6C-like OS=Cucurbita moschata OX=3662 GN=LOC111451873 PE=4 SV=1)

HSP 1 Score: 646.7 bits (1667), Expect = 6.3e-182
Identity = 340/418 (81.34%), Postives = 365/418 (87.32%), Query Frame = 0


Query: 1   MGEPISEEKL----EME-LKEGFGGDGGGDGGGDSSSNGGLGFKFNPQAAEFFPRAQTQM 60
           M E   E+K+    EME +K+   GD    G G S+SNG L FKFN QA EFFPR+QTQM
Sbjct: 1   MAESNPEKKVNPNPEMEVVKQAVNGDA---GVGSSTSNGDLSFKFNAQAPEFFPRSQTQM 60

Query: 61  PVTAYFHPYFHF-----PTSDWFFVGDQEPAYFIPNAAISLPNFSNNVRSDDIQHKIVKQ 120
           PVT YFHPYFHF      TSDWFF+GDQEP Y IPN  I LPNFS N RSDDI  K+VKQ
Sbjct: 61  PVTGYFHPYFHFLGGAPATSDWFFIGDQEPTYLIPNPTIPLPNFSKNPRSDDIHQKLVKQ 120

Query: 121 VEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIVQALRSSSKLV 180
           VEYQFSDMSLLANESLAK  SKDPDGYVPISVISSTKK+KSLSTNNNLIVQALRSSSKLV
Sbjct: 121 VEYQFSDMSLLANESLAKSISKDPDGYVPISVISSTKKVKSLSTNNNLIVQALRSSSKLV 180

Query: 181 VSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGSVKTIRICHPP 240
           VSADGKKV+RKHPFT+KDKEEL+SRTVVVENLPDNHSHHNLEKIFSVIGSVKT+RICHPP
Sbjct: 181 VSADGKKVKRKHPFTDKDKEELLSRTVVVENLPDNHSHHNLEKIFSVIGSVKTVRICHPP 240

Query: 241 ESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRVRLLLRRTPKSVL 300
           ESNPCCSKGELFISNKLHALVEYE  + AERAAEKLNDERNWRKGLRVRLLLRR+PKSVL
Sbjct: 241 ESNPCCSKGELFISNKLHALVEYEIAELAERAAEKLNDERNWRKGLRVRLLLRRSPKSVL 300

Query: 301 KTRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSKKGWGRGRGKGRG 360
           KTRKS+F+ ILDEDDSP +VS E ESSL NITE I DC+SEENSTS+KKGWGRGRGKGRG
Sbjct: 301 KTRKSDFDCILDEDDSPSTVSTEQESSLPNITELINDCSSEENSTSAKKGWGRGRGKGRG 360

Query: 361 RIHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMPDGTKGFTMGRGKPLTSKPV 409
           RIH+ LDRS S PV+AMQSSSQV+CEASSKLT+KSPRMPDGTKGFTMGRGKPL+SKPV
Sbjct: 361 RIHSHLDRSCSLPVAAMQSSSQVVCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPV 415

[Close]

BLAST of Sed0023862 vs. TAIR 10
Match: AT3G19090.1 (RNA-binding protein )

HSP 1 Score: 369.4 bits (947), Expect = 3.8e-102
Identity = 218/434 (50.23%), Postives = 279/434 (64.29%), Query Frame = 0


Query: 25  DGGGDSSSNGGLGFKFNPQAAEFFPRAQTQ------MPVTAYFHPYFHF----------- 84
           DGGG SS      FKFN QA EF PR+ T        PV+ YF+P FH+           
Sbjct: 20  DGGGGSSGAQATAFKFNAQAPEFVPRSHTTAPAPQVSPVSGYFYPCFHYNGGCIGGCGGG 79

Query: 85  -----------PTSDWFFVGDQEP------------AYFIPNAAISLP------NFSNNV 144
                       +SDW +VG  +P            A++I N A+  P      + S N+
Sbjct: 80  VCGGGGTGVGTQSSDWIYVGGGDPTAQHQHVHDPAAAFYISNPAVQFPASQNSSSSSKNL 139

Query: 145 RSDDIQHKIVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNL 204
            SDD++ KIVKQVEYQF+DMSLLANES++KH SKDP+GYVP+S I+STKKIK+L++N++L
Sbjct: 140 LSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHL 199

Query: 205 IVQALRSSSKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVI 264
           +  ALRSSSKLVVS DGKKV+R   FT++D+EEL  RTVV ENLPD+HS+ NLEKIF V+
Sbjct: 200 VSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVV 259

Query: 265 GSVKTIRICHPPESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRV 324
           G+VK IRICHPPESN    KG+  +SNK+HAL+EY+    A++A EKLNDERNWRKGLRV
Sbjct: 260 GNVKAIRICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRKGLRV 319

Query: 325 RLLLRRTPKSVLKTRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVDCNSEENSTSSK 384
           RLLLR +PKSVLK R++ F+ IL +D+ P   S E +S   ++TE  +D + ++N+    
Sbjct: 320 RLLLRCSPKSVLKNRRN-FDGILIDDELPSYESGE-DSPRLHLTESQLDNDGDDNNVGGL 379

Query: 385 KGWGRGRGKGRGRIHTQL-----DRSYSFPVSAMQSSSQVLCEASS--KLTSKSPRMPDG 406
             WG+GRGKGRGR           RS+   +        +    SS  K  +K PRMPDG
Sbjct: 380 --WGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLGSHESSSPKTATKGPRMPDG 439

[Close]

BLAST of Sed0023862 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 210.7 bits (535), Expect = 2.2e-54
Identity = 143/370 (38.65%), Postives = 196/370 (52.97%), Query Frame = 0


Query: 87  AAISLPNFSNNVRSDDIQHKIVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISST 146
           A++S+ +    +  D IQ KIV QVEY FSD++L   + L +   KDP+GYVPI V++S 
Sbjct: 179 ASVSIDS-KTGLPEDSIQ-KIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASF 238

Query: 147 KKIKSLSTNNNLIVQALRSSSKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNH 206
           KKIK++  NN+ +   L++S+KL VS DGKKVRR  P TE   EEL SR +V ENLP++H
Sbjct: 239 KKIKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDH 298

Query: 207 SHHNLEKIFSVIGSVKTIRICH--------PPESNPCCSKGELFISNKLHALVEYETVDF 266
            + NL KIFS +GSVK IR C         PP +           SNK+HA VEYE V+ 
Sbjct: 299 CYQNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVEL 358

Query: 267 AERAAEKLNDERNWRKGLRVRLLLRRTPKSVL----KTRKSEFESILDEDDSPPSVSIEP 326
           AERA  +L++  NWR GL+VRL+L+   K       + RK     +  E+D   +   +P
Sbjct: 359 AERAVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQP 418

Query: 327 ESSLSNITEQIVDCNSE----------------ENSTSSKKGWGRGRGKGRGRIHTQLDR 386
                 I +Q  DC+ E                E +   +KG  RGRGKGRGR     ++
Sbjct: 419 ------IEKQSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQ 478

Query: 387 SYSFPVSAMQSSS-------------QVLCEASS------------KLTSKSPRMPDGTK 404
           + +   S  Q+ +             QV  + S+            K     PRMPDGT+
Sbjct: 479 NQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTR 538

[Close]

BLAST of Sed0023862 vs. TAIR 10
Match: AT2G43970.2 (RNA-binding protein )

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-44
Identity = 132/370 (35.68%), Postives = 184/370 (49.73%), Query Frame = 0


Query: 87  AAISLPNFSNNVRSDDIQHKIVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISST 146
           A++S+ +    +  D IQ KIV QVEY FSD++L   + L +   KDP+GYVPI V++S 
Sbjct: 179 ASVSIDS-KTGLPEDSIQ-KIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASF 238

Query: 147 KKIKSLSTNNNLIVQALRSSSKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNH 206
           KKIK++  NN+ +   L++S+KL VS DGKKVRR  P TE   EEL SR +V ENLP++H
Sbjct: 239 KKIKAVINNNSQLAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDH 298

Query: 207 SHHNLEKIFSVIGSVKTIRICH--------PPESNPCCSKGELFISNKLHALVEYETVDF 266
            + NL KIFS +GSVK IR C         PP +           SNK+           
Sbjct: 299 CYQNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKV----------- 358

Query: 267 AERAAEKLNDERNWRKGLRVRLLLRRTPKSVL----KTRKSEFESILDEDDSPPSVSIEP 326
                 +L++  NWR GL+VRL+L+   K       + RK     +  E+D   +   +P
Sbjct: 359 -----TELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGHDADVEHEEDDATTSEQQP 418

Query: 327 ESSLSNITEQIVDCNSE----------------ENSTSSKKGWGRGRGKGRGRIHTQLDR 386
                 I +Q  DC+ E                E +   +KG  RGRGKGRGR     ++
Sbjct: 419 ------IEKQSDDCSGEWDTHMQEQPIGEDQGNEKAAGQRKGRNRGRGKGRGRGQPHQNQ 478

Query: 387 SYSFPVSAMQSSS-------------QVLCEASS------------KLTSKSPRMPDGTK 404
           + +   S  Q+ +             QV  + S+            K     PRMPDGT+
Sbjct: 479 NQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPGPRMPDGTR 524

[Close]

BLAST of Sed0023862 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 168.7 bits (426), Expect = 9.7e-42
Identity = 117/314 (37.26%), Postives = 171/314 (54.46%), Query Frame = 0


Query: 101 DDIQHKIVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIV 160
           D++  KI++QVEY FSD +L  ++ L     ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 161 QALRSSSKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGS 220
            AL+ SS LVVSAD KKV+R  P  E    ++   TV+VENLP++HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 221 VKTIRICHP--PESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRV 280
           +K++ IC P   E +    K E FI  +LHA VEYETV+ AE+AA  LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 281 RLLLRRTPKSVLKTRKSEFESILDEDDSPPSVSIEPESSLSNITEQIVD---------CN 340
           +LL +   K     R+     +  E D+   V  +     +  T +  +          +
Sbjct: 281 KLLEQAAGK--FAQRRPARREVDKEKDTTGRVHDQTGGEKNKKTREHQNHRLHHSDNPAD 340

Query: 341 SEENSTSSKKGWGRGRGKGRGRIHTQLDRSYSFPVSAMQSSSQVLCEASSKLTSKSPRMP 400
            +  +    K   +GR  G+GR       +     +A  SS               PRMP
Sbjct: 341 DDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPPGPRMP 400

Query: 401 DGTKGFTMGRGKPL 404
           DGT+GFTMGRGK +
Sbjct: 401 DGTRGFTMGRGKAI 410

[Close]

BLAST of Sed0023862 vs. TAIR 10
Match: AT5G46250.2 (RNA-binding protein )

HSP 1 Score: 156.0 bits (393), Expect = 6.5e-38
Identity = 87/183 (47.54%), Postives = 124/183 (67.76%), Query Frame = 0


Query: 101 DDIQHKIVKQVEYQFSDMSLLANESLAKHNSKDPDGYVPISVISSTKKIKSLSTNNNLIV 160
           D++  KI++QVEY FSD +L  ++ L     ++  G+VPIS I++  K+K L+ ++ LIV
Sbjct: 101 DELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIV 160

Query: 161 QALRSSSKLVVSADGKKVRRKHPFTEKDKEELMSRTVVVENLPDNHSHHNLEKIFSVIGS 220
            AL+ SS LVVSAD KKV+R  P  E    ++   TV+VENLP++HS+ N+ +IF   GS
Sbjct: 161 SALKESSFLVVSADEKKVKRLSPLPEIRDPKIF--TVLVENLPEDHSNENIREIFGKAGS 220

Query: 221 VKTIRICHP--PESNPCCSKGELFISNKLHALVEYETVDFAERAAEKLNDERNWRKGLRV 280
           +K++ IC P   E +    K E FI  +LHA VEYETV+ AE+AA  LN+E++WR GLRV
Sbjct: 221 IKSVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRV 280

Query: 281 RLL 282
           +LL
Sbjct: 281 KLL 281

The following BLAST results are available for this feature:

BLAST of Sed0023862 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148536.1	1.0e-186	83.77	la-related protein 6C [Momordica charantia]	[more]
XP_023007490.1	1.8e-186	83.45	la-related protein 6C [Cucurbita maxima]	[more]
XP_023533918.1	3.0e-186	83.45	la-related protein 6C [Cucurbita pepo subsp. pepo]	[more]
KAG6605122.1	3.9e-186	83.86	La-related protein 6C, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022948148.1	6.7e-186	83.21	la-related protein 6C [Cucurbita moschata]	[more]

BLAST of Sed0023862 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHL3	5.3e-101	50.23	La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1	[more]
O80567	3.1e-53	38.65	La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2	[more]
Q94A38	1.4e-40	37.26	La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1	[more]
Q05CL8	1.9e-18	38.27	La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2	[more]
Q4G0J3	3.3e-18	38.27	La-related protein 7 OS=Homo sapiens OX=9606 GN=LARP7 PE=1 SV=1	[more]

BLAST of Sed0023862 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5P1	5.0e-187	83.77	la-related protein 6C OS=Momordica charantia OX=3673 GN=LOC111017163 PE=4 SV=1	[more]
A0A6J1L340	8.5e-187	83.45	la-related protein 6C OS=Cucurbita maxima OX=3661 GN=LOC111499965 PE=4 SV=1	[more]
A0A6J1G8K6	3.2e-186	83.21	la-related protein 6C OS=Cucurbita moschata OX=3662 GN=LOC111451813 PE=4 SV=1	[more]
A0A6J1L529	4.8e-182	81.10	la-related protein 6C-like OS=Cucurbita maxima OX=3661 GN=LOC111499964 PE=4 SV=1	[more]
A0A6J1G8M9	6.3e-182	81.34	la-related protein 6C-like OS=Cucurbita moschata OX=3662 GN=LOC111451873 PE=4 SV...	[more]

BLAST of Sed0023862 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19090.1	3.8e-102	50.23	RNA-binding protein	[more]
AT2G43970.1	2.2e-54	38.65	RNA-binding protein	[more]
AT2G43970.2	1.2e-44	35.68	RNA-binding protein	[more]
AT5G46250.1	9.7e-42	37.26	RNA-binding protein	[more]
AT5G46250.2	6.5e-38	47.54	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 189..205 score: 24.6 coord: 136..151 score: 28.41 coord: 110..127 score: 38.89 coord: 167..180 score: 40.91
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 196..279 e-value: 0.0031 score: 26.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 197..268 e-value: 4.4E-7 score: 29.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 195..285 score: 10.326077
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 101..181 e-value: 7.4E-36 score: 135.1
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 107..164 e-value: 1.1E-15 score: 57.4
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 97..188 score: 23.702072
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 186..288 e-value: 4.3E-12 score: 48.1
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 99..185 e-value: 1.7E-24 score: 87.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 328..353
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 375..409
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR22792:SF62	LA-RELATED PROTEIN 6C	coord: 28..404
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 28..404
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 181..288
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 99..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023862.1	Sed0023862.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding