Sed0023810 (gene) Chayote v1

Overview


Name	Sed0023810
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ethylene-responsive transcription factor RAP2-11-like
Location	LG03: 19545696 .. 19546313 (+)
RNA-Seq Expression	Sed0023810
Synteny	Sed0023810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATAAACTTCCAGTCGCCGGAGAGCAACGGCGGAGGCGCCGCACGCAAGGGGAAGACAGTCAAATCAAAAGGCAAAAGCAGAGGAAGAAACAGCAAGAAGTTGGTCGGAATCCGGCAACGACCGTCGGGAAGATGGGTGGCGGAAATCAAAGACACGACAAAGAAAATCCGAATGTGGTTGGGGACATTCGAGACGGCCGAGGAAGCCGCTCGGGCGTACGATGAAGCCGCTTGTCTTCTCCGCGGTTCCAACACCAGAACCAATTTCATCCCACAATTCCCCACAAATTCCCCAATCGCCTCAAGAATTCGCACCCTCTTAAACAACAAGAACAAAACCCCGATTTCAAAACCCATGGCCGCGGATCCGACACTTGAGGACGTGTATAAACCCGACATGTCGAATTGCTTGGAAGAAACAGAGATGGGCGTTTGGGATTGCTGTTCTGGAAATGGGTTTTCCATTTTGGAGGATTTTGAGATGATGAAAGTTGAGAGGCAAATTTCGGCTTCTTTGTATGCGATCAATGGAGTTCATGAATACATGGAGGCTGTTCATCAGGACCCTCCATCCGTTTGGGATCTCACACCAATCTCTTCTTTCTTCCCTTGA

mRNA sequence

ATGGAAATAAACTTCCAGTCGCCGGAGAGCAACGGCGGAGGCGCCGCACGCAAGGGGAAGACAGTCAAATCAAAAGGCAAAAGCAGAGGAAGAAACAGCAAGAAGTTGGTCGGAATCCGGCAACGACCGTCGGGAAGATGGGTGGCGGAAATCAAAGACACGACAAAGAAAATCCGAATGTGGTTGGGGACATTCGAGACGGCCGAGGAAGCCGCTCGGGCGTACGATGAAGCCGCTTGTCTTCTCCGCGGTTCCAACACCAGAACCAATTTCATCCCACAATTCCCCACAAATTCCCCAATCGCCTCAAGAATTCGCACCCTCTTAAACAACAAGAACAAAACCCCGATTTCAAAACCCATGGCCGCGGATCCGACACTTGAGGACGTGTATAAACCCGACATGTCGAATTGCTTGGAAGAAACAGAGATGGGCGTTTGGGATTGCTGTTCTGGAAATGGGTTTTCCATTTTGGAGGATTTTGAGATGATGAAAGTTGAGAGGCAAATTTCGGCTTCTTTGTATGCGATCAATGGAGTTCATGAATACATGGAGGCTGTTCATCAGGACCCTCCATCCGTTTGGGATCTCACACCAATCTCTTCTTTCTTCCCTTGA

Coding sequence (CDS)

ATGGAAATAAACTTCCAGTCGCCGGAGAGCAACGGCGGAGGCGCCGCACGCAAGGGGAAGACAGTCAAATCAAAAGGCAAAAGCAGAGGAAGAAACAGCAAGAAGTTGGTCGGAATCCGGCAACGACCGTCGGGAAGATGGGTGGCGGAAATCAAAGACACGACAAAGAAAATCCGAATGTGGTTGGGGACATTCGAGACGGCCGAGGAAGCCGCTCGGGCGTACGATGAAGCCGCTTGTCTTCTCCGCGGTTCCAACACCAGAACCAATTTCATCCCACAATTCCCCACAAATTCCCCAATCGCCTCAAGAATTCGCACCCTCTTAAACAACAAGAACAAAACCCCGATTTCAAAACCCATGGCCGCGGATCCGACACTTGAGGACGTGTATAAACCCGACATGTCGAATTGCTTGGAAGAAACAGAGATGGGCGTTTGGGATTGCTGTTCTGGAAATGGGTTTTCCATTTTGGAGGATTTTGAGATGATGAAAGTTGAGAGGCAAATTTCGGCTTCTTTGTATGCGATCAATGGAGTTCATGAATACATGGAGGCTGTTCATCAGGACCCTCCATCCGTTTGGGATCTCACACCAATCTCTTCTTTCTTCCCTTGA

Protein sequence

MEINFQSPESNGGGAARKGKTVKSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQFPTNSPIASRIRTLLNNKNKTPISKPMAADPTLEDVYKPDMSNCLEETEMGVWDCCSGNGFSILEDFEMMKVERQISASLYAINGVHEYMEAVHQDPPSVWDLTPISSFFP

Homology

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BLAST of Sed0023810 vs. NCBI nr
Match: KAG6603485.1 (Ethylene-responsive transcription factor ERN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-67
Identity = 148/229 (64.63%), Postives = 165/229 (72.05%), Query Frame = 0


Query: 1   MEINFQSPESNGGGAARKGKTVKSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRM 60
           MEINFQSPE++GG A    KT K KGK+ G N  K VG+RQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTGGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTN-FIPQFPTNSPIASRIRTLLNNKNKTPISK 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTN FIPQ PTNSPIASRIRTLLN+K   P+  
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKK--PLEN 120

Query: 121 PMAA-------DPTLED------VYKPDMSNCLEETEMGVWDCCSGNGFSILE------- 180
           P AA        PT++D       YKPDM+NC E+TEMG   CCS +    ++       
Sbjct: 121 PAAAAASAAVPAPTIQDGRMYDADYKPDMTNCSEKTEMG--SCCSSDSCRFVDGFWNSED 180

Query: 181 ----DFEMMKVERQISASLYAINGVHEYMEAVHQDPPSVWDLTPISSFF 205
               DFE MKVERQIS  LYA+NGVHEYMEAVH+   S+WDL P+ S F
Sbjct: 181 LELCDFERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPLCSLF 225

[Close]

BLAST of Sed0023810 vs. NCBI nr
Match: XP_022950635.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita moschata])

HSP 1 Score: 264.6 bits (675), Expect = 7.0e-67
Identity = 144/222 (64.86%), Postives = 162/222 (72.97%), Query Frame = 0


Query: 1   MEINFQSPESNGGGAARKGKTVKSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRM 60
           MEINFQSPE++GG A    KT K KGK+RG N  K VG+RQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTN-FIPQFPTNSPIASRIRTLLNNK----NKT 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTN FIPQ PTNSPIASRIRTLLN+K    N +
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGNSS 120

Query: 121 PISKPMAADPTLED------VYKPDMSNCLEETEMGVWDCCSGNGFSILE---------- 180
             +      PT++D       YKPDM+NC E+TEMG   CCS +    ++          
Sbjct: 121 AAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMG--SCCSSDSCRFVDGFWNSEDLEL 180

Query: 181 -DFEMMKVERQISASLYAINGVHEYMEAVHQDPPSVWDLTPI 201
            DFE MKVERQIS  LYA+NGVHEYMEAVH+   S+WDL P+
Sbjct: 181 CDFERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 220

[Close]

BLAST of Sed0023810 vs. NCBI nr
Match: XP_022978278.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita maxima])

HSP 1 Score: 263.5 bits (672), Expect = 1.6e-66
Identity = 145/226 (64.16%), Postives = 162/226 (71.68%), Query Frame = 0


Query: 1   MEINFQSPESNGGGAARKGKTVKSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRM 60
           MEI+FQSPE++GG A    KT K KGK+RG N  K VG+RQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTN-FIPQFPTNSPIASRIRTLLNNK----NKT 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTN FIPQ  TNSPIASRIRTLLN+K    N  
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQISTNSPIASRIRTLLNSKKSLENPA 120

Query: 121 PISKPMAADPTLED------VYKPDMSNCLEETEMGVWDCCSGNGFSILE---------- 180
             S      PT++D       YKPDM+NC E+TEMG   CCS +    ++          
Sbjct: 121 AASAAAVPAPTIQDGRMLDGDYKPDMTNCSEKTEMG--SCCSSDSCRFVDGFWNSDDLEF 180

Query: 181 -DFEMMKVERQISASLYAINGVHEYMEAVHQDPPSVWDLTPISSFF 205
            DFE MKVERQIS  LYA+NGVHEYMEAVH+   S+WDL P+ S F
Sbjct: 181 CDFERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPLGSLF 224

[Close]

BLAST of Sed0023810 vs. NCBI nr
Match: XP_023545037.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.3 bits (669), Expect = 3.5e-66
Identity = 145/229 (63.32%), Postives = 164/229 (71.62%), Query Frame = 0


Query: 1   MEINFQSPESNGGGAARKGKTVKSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRM 60
           MEINFQSPE++GG A    KT K KGK+RG N  K VG+RQRPSGRWVAEIKDTT+KIRM
Sbjct: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTRKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTN-FIPQFPTNSPIASRIRTLLNNKNKTPISK 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTN FIPQ  TNSPIASRIRTLLN+K   P+  
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQISTNSPIASRIRTLLNSKK--PLEN 120

Query: 121 PMAA-------DPTLED------VYKPDMSNCLEETEMGVWDCCSGNGFSILE------- 180
           P AA        PT++D       YKPDM+NC E+TEMG   CCS +    ++       
Sbjct: 121 PPAAAASAAVPAPTIQDGRMFDGDYKPDMTNCSEKTEMG--SCCSSDSCRFVDGFWNSED 180

Query: 181 ----DFEMMKVERQISASLYAINGVHEYMEAVHQDPPSVWDLTPISSFF 205
               DFE MK ERQIS  LYA+NGVHEYMEAVH+   S+WD+ P+ S F
Sbjct: 181 LELCDFERMKFERQISGCLYAMNGVHEYMEAVHEASESIWDIPPLCSLF 225

[Close]

BLAST of Sed0023810 vs. NCBI nr
Match: XP_038883288.1 (ethylene-responsive transcription factor ERN1-like [Benincasa hispida])

HSP 1 Score: 255.4 bits (651), Expect = 4.3e-64
Identity = 148/241 (61.41%), Postives = 167/241 (69.29%), Query Frame = 0


Query: 1   MEINFQSPESNGGGAARKGKTVKSKGKSRGRNS-KKLVGIRQRPSGRWVAEIKDTTKKIR 60
           MEI+FQSPE++GG A    KT K KG+SRG N+  K VG+RQRPSGRWVAEIKDTTKKIR
Sbjct: 1   MEIDFQSPETHGGAAVSVIKTSKFKGRSRGNNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQFPTNSPIASRIRTLLNNK---NKTP 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQ  TNSPIASRIR+LLN K   N+  
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRKS 120

Query: 121 ISKP-----------MAADPTLED------VYKPDMSNCLEETEMGVWD-CCS---GNGF 180
           +  P             ADP+++D       YKPDM+NCLEE E+G  D  CS   G G 
Sbjct: 121 LENPTTTSAAAAATSAVADPSIQDDGLFDGAYKPDMTNCLEEREVGYCDSSCSVSCGLGV 180

Query: 181 SILED------------FEMMKVERQISASLYAINGVHEYMEAVHQDPPSVWDLTPISSF 205
            + E+            FE MKVERQISASLYAINGV EYMEAVH+    +WDL P+ S 
Sbjct: 181 PLPENVTANSEELELCAFERMKVERQISASLYAINGVQEYMEAVHEASEPIWDLPPLCSL 240

[Close]

BLAST of Sed0023810 vs. ExPASy Swiss-Prot
Match: A2Q5W1 (Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-51
Identity = 132/267 (49.44%), Postives = 151/267 (56.55%), Query Frame = 0


Query: 1   MEINFQSP--ESNGGGAARKGKTVKSKGKSR-GRNSKKLVGIRQRPSGRWVAEIKDTTKK 60
           MEI FQ P  ++   G +   K  K KG++R   N+ K VG+RQRPSGRWVAEIKDTT+K
Sbjct: 1   MEIQFQQPNMQNQKAGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQK 60

Query: 61  IRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQFPTNSPIASRIRTLLNNK----- 120
           IRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFI     +SP+ASRIR LLNN+     
Sbjct: 61  IRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGDKK 120

Query: 121 ------------NKTPISKPMA-------ADPTL-----------EDVYKPDMSNCLEET 180
                       +KT IS            + TL           ED YKPD+SNC E  
Sbjct: 121 QEDGAVASAPSNSKTTISNTSTITSNDDNKESTLSTCATRNTELFEDAYKPDLSNCKEVF 180

Query: 181 EMGVW---DCCSGNGFS----------------------ILEDFEMMKVERQISASLYAI 205
           E G      C  G  F                        L +FE MKVERQISASLYAI
Sbjct: 181 ESGSQSNISCGFGPFFDHFSFTQLLDMAKNDDITDASSLELSEFERMKVERQISASLYAI 240

[Close]

BLAST of Sed0023810 vs. ExPASy Swiss-Prot
Match: A0A1X9PY88 (Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.2e-50
Identity = 129/274 (47.08%), Postives = 148/274 (54.01%), Query Frame = 0


Query: 1   MEINFQSPE-SNGGGAARKGKTVKSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIR 60
           MEI FQ P       A  KG   K KG++R  N+ K VG+RQRPSGRWVAEIKDTT+KIR
Sbjct: 1   MEIQFQQPNLQQHQKAGTKGG--KFKGRNRNSNTNKFVGVRQRPSGRWVAEIKDTTQKIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQFPTNSPIASRIRTLLNNK--NK--- 120
           MWLGTFETAEEAARAYDEAACLLRGSNTRTNFI     +SP+ASRIR LLNNK  NK   
Sbjct: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGNKKQE 120

Query: 121 --------TPISKPMAADPT--------------------------LEDVYKPDMSNCLE 180
                     +  P A+  +                           +D YKPD+SNC E
Sbjct: 121 GVVDVGVDVDVPAPSASTTSTSSNTSNSDKNDHNSLSSGKVQNTMLFDDAYKPDLSNCKE 180

Query: 181 ETEMGVWDCCSGNGFS------------------------------ILEDFEMMKVERQI 205
           + +     C   + FS                               L +FE MKVERQI
Sbjct: 181 DFQ----SCPPQSNFSWGFGPVFDRFPIAQILDMPKTDGMIDAASLELSEFERMKVERQI 240

[Close]

BLAST of Sed0023810 vs. ExPASy Swiss-Prot
Match: Q6J9S1 (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.8e-37
Identity = 99/242 (40.91%), Postives = 125/242 (51.65%), Query Frame = 0


Query: 23  KSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLL 82
           K+K KS+G N  K VG+RQRPSG+WVAEIKDTT+KIRMWLGTFETAEEAARAYDEAACLL
Sbjct: 10  KTKEKSKG-NKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLL 69

Query: 83  RGSNTRTNFIPQFPTNSPIASRIRTLLNNKNKTPISKPMAADPT---------------- 142
           RGSNTRTNF   FP NS ++ +IR LL+ K      +     P                 
Sbjct: 70  RGSNTRTNFANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKPVSSLTDCNINYISTATS 129

Query: 143 --------------LEDVYKPDMSNCLEETEMGV-----WDCCSG--------------- 202
                         L +VY+PD S   +    G+     W   SG               
Sbjct: 130 LTTTTTTTTTTAIPLNNVYRPDSSVIGQPETEGLQLPYSWPLVSGFNHQIPLAQAGGETH 189

Query: 203 ----NGFSILEDFEMMKVERQISASLYAINGVHEYME------AVHQDPPSVWDLTPISS 205
               + +S  +   + ++ERQISASLYA+NG + Y +      A+      +WDL  +S 
Sbjct: 190 GHLNDHYSTDQHLGLAEIERQISASLYAMNGANSYYDNMNAEYAIFDPTDPIWDLPSLSQ 249

[Close]

BLAST of Sed0023810 vs. ExPASy Swiss-Prot
Match: A9Y0K8 (Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=ERN2 PE=1 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-35
Identity = 114/316 (36.08%), Postives = 140/316 (44.30%), Query Frame = 0


Query: 1   MEINFQSPESNGGGAARKGKTVKSKGKSRGRNSK-KLVGIRQRPSGRWVAEIKDTTKKIR 60
           MEI F  P+     + R  K  K KG+++   ++ K VG+RQRPSGR+VAEIKDTT+ IR
Sbjct: 1   MEIQFDEPKK----SLRPKKVNKFKGRNKKSETRDKFVGVRQRPSGRYVAEIKDTTQNIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQFPTNSPIASRIRTLLNNKNKTPISK 120
           MWLGTFETAEEAARAYDEAA LLRGS TRTNF+     +SP+ASRIR LLNN+ K    +
Sbjct: 61  MWLGTFETAEEAARAYDEAATLLRGSKTRTNFVTHVSYDSPLASRIRHLLNNRKKGTKQQ 120

Query: 121 PM--------AADPT--------------------------------------------- 180
            M         AD T                                             
Sbjct: 121 DMNGISSTTSHADTTNDTTSDGSTSSTTNCIGTASGAINSTSASGVTSTSTNISTSASGV 180

Query: 181 -----------------------------------LEDVYKPDMSNCLEETEMGVW---- 201
                                               ED Y+PDMSN   E E   +    
Sbjct: 181 ASTSTDISTNSSNTNVNDKSESLLSSSTTMQKPNLFEDAYRPDMSNLTNEYESSSYKSNV 240

[Close]

BLAST of Sed0023810 vs. ExPASy Swiss-Prot
Match: A9Y0K9 (Ethylene-responsive transcription factor ERN3 OS=Medicago truncatula OX=3880 GN=ERN3 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.8e-24
Identity = 60/105 (57.14%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 17  RKGKTVKSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYD 76
           +K    K   K   +N  K VG+RQR SG+W AEIKDT+K IRMWLGT++TAEEAARAYD
Sbjct: 6   QKSNENKHGEKLMMKNRSKFVGVRQRASGKWAAEIKDTSKNIRMWLGTYKTAEEAARAYD 65

Query: 77  EAACLLRGSNTRTNF--IPQFPTNSPIASRIRTLLNNKNKTPISK 120
           EAA LLRG+NTRTNF      PTNSPI+ +++ LL+ K+ + +S+
Sbjct: 66  EAAFLLRGTNTRTNFSTTHSIPTNSPISLKLKNLLHRKSISNLSQ 110

[Close]

BLAST of Sed0023810 vs. ExPASy TrEMBL
Match: A0A6J1GGA9 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3662 GN=LOC111453675 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.4e-67
Identity = 144/222 (64.86%), Postives = 162/222 (72.97%), Query Frame = 0


Query: 1   MEINFQSPESNGGGAARKGKTVKSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRM 60
           MEINFQSPE++GG A    KT K KGK+RG N  K VG+RQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTN-FIPQFPTNSPIASRIRTLLNNK----NKT 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTN FIPQ PTNSPIASRIRTLLN+K    N +
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGNSS 120

Query: 121 PISKPMAADPTLED------VYKPDMSNCLEETEMGVWDCCSGNGFSILE---------- 180
             +      PT++D       YKPDM+NC E+TEMG   CCS +    ++          
Sbjct: 121 AAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMG--SCCSSDSCRFVDGFWNSEDLEL 180

Query: 181 -DFEMMKVERQISASLYAINGVHEYMEAVHQDPPSVWDLTPI 201
            DFE MKVERQIS  LYA+NGVHEYMEAVH+   S+WDL P+
Sbjct: 181 CDFERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 220

[Close]

BLAST of Sed0023810 vs. ExPASy TrEMBL
Match: A0A6J1ISK7 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=3661 GN=LOC111478312 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 7.6e-67
Identity = 145/226 (64.16%), Postives = 162/226 (71.68%), Query Frame = 0


Query: 1   MEINFQSPESNGGGAARKGKTVKSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRM 60
           MEI+FQSPE++GG A    KT K KGK+RG N  K VG+RQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTN-FIPQFPTNSPIASRIRTLLNNK----NKT 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTN FIPQ  TNSPIASRIRTLLN+K    N  
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQISTNSPIASRIRTLLNSKKSLENPA 120

Query: 121 PISKPMAADPTLED------VYKPDMSNCLEETEMGVWDCCSGNGFSILE---------- 180
             S      PT++D       YKPDM+NC E+TEMG   CCS +    ++          
Sbjct: 121 AASAAAVPAPTIQDGRMLDGDYKPDMTNCSEKTEMG--SCCSSDSCRFVDGFWNSDDLEF 180

Query: 181 -DFEMMKVERQISASLYAINGVHEYMEAVHQDPPSVWDLTPISSFF 205
            DFE MKVERQIS  LYA+NGVHEYMEAVH+   S+WDL P+ S F
Sbjct: 181 CDFERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPLGSLF 224

[Close]

BLAST of Sed0023810 vs. ExPASy TrEMBL
Match: A0A6J1EE15 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3662 GN=LOC111432381 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.9e-63
Identity = 146/260 (56.15%), Postives = 170/260 (65.38%), Query Frame = 0


Query: 1   MEINFQSPESNGGGAARKGKTVKSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRM 60
           MEI+FQSP ++GG  A  GK+ K KG++RG N+ K VG+RQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPGTHGGATASLGKSSKFKGRTRGNNANKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQFPTNSPIASRIRTLLNNKNKTPISKP 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQ  TNSPIASRIR+LLN++ K  I  P
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNSR-KNQILNP 120

Query: 121 M-------AADPTLED------VYKPDMSNCLEETEMGVWDC--------------CSGN 180
           +        A P ++D       YKPDM+NCLEETEMG   C               SG 
Sbjct: 121 LKNHPAAAVAAPIIQDGRLFDGAYKPDMTNCLEETEMGSDFCSDSSCSSDSSRLGASSGG 180

Query: 181 GF----SILED-------------------------FEMMKVERQISASLYAINGVHEYM 205
           GF    S++++                         FE MKVERQISASLYA+NGV EYM
Sbjct: 181 GFVDGLSMVQESMKFPVNAAALQAESEHSEDLELLAFERMKVERQISASLYAMNGVQEYM 240

[Close]

BLAST of Sed0023810 vs. ExPASy TrEMBL
Match: A0A6J1HMY7 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=3661 GN=LOC111466085 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 8.6e-63
Identity = 146/266 (54.89%), Postives = 170/266 (63.91%), Query Frame = 0


Query: 1   MEINFQSPESNGGGAARKGKTVKSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRM 60
           MEI+FQSP  +GG  A  GK+ K KG++RG N+ K +G+RQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPGIHGGATASLGKSSKFKGRTRGSNANKFLGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQFPTNSPIASRIRTLLNNKNKTPISKP 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQ  TNSPIASRIR+LLN + K PI  P
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNGR-KNPILSP 120

Query: 121 M-------------AADPTLED------VYKPDMSNCLEETEMGVWDC----CSG----- 180
           +             AA P ++D       YKPDM+NCLEETEMG   C    CS      
Sbjct: 121 LRNHPPAAAAAAAAAAAPIIQDGRLFDGAYKPDMTNCLEETEMGSDFCSDSSCSSDSSRL 180

Query: 181 ---------NGFSILED-------------------------FEMMKVERQISASLYAIN 205
                    +G S++++                         FE MKVERQISASLYA+N
Sbjct: 181 GASSGAGFVDGLSMVQESMKFPVNAAALQAESEHSEDLELLAFERMKVERQISASLYAMN 240

[Close]

BLAST of Sed0023810 vs. ExPASy TrEMBL
Match: A0A5A7UZM7 (Ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00240 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.6e-61
Identity = 143/241 (59.34%), Postives = 162/241 (67.22%), Query Frame = 0


Query: 1   MEINFQSPESNGGGAARK-GKTVKSKGKSRGRNS-KKLVGIRQRPSGRWVAEIKDTTKKI 60
           MEI+FQS E +GG  A    K+ K KG++R  N+  K VG+RQRPSGRWVAEIKDTTKKI
Sbjct: 1   MEIDFQSSEIHGGATASSIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60

Query: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQFPTNSPIASRIRTLLNNK---NKT 120
           RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQ  TNSPIASRIR+LLN K   N+ 
Sbjct: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFIPQISTNSPIASRIRSLLNTKKTVNRK 120

Query: 121 PISKPMAA----------------DPTLEDVYKPDMSNCLEETEMGVWD-CCSGN---GF 180
           P+  P  +                D   E  YKPDM+NCLEE E+   D CCS +   G 
Sbjct: 121 PLETPTTSVAASAGSAVVGPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELGV 180

Query: 181 SILED------------FEMMKVERQISASLYAINGVHEYMEAVHQDPPSVWDLTPISSF 205
           S+ E+            FE MKVERQISASLYAINGV EYMEAVH+    +WDL P+ S 
Sbjct: 181 SLAENGTVSSEELELCAFERMKVERQISASLYAINGVQEYMEAVHEANEPIWDLPPLCSL 240

[Close]

BLAST of Sed0023810 vs. TAIR 10
Match: AT5G19790.1 (related to AP2 11 )

HSP 1 Score: 155.2 bits (391), Expect = 5.6e-38
Identity = 99/242 (40.91%), Postives = 125/242 (51.65%), Query Frame = 0


Query: 23  KSKGKSRGRNSKKLVGIRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLL 82
           K+K KS+G N  K VG+RQRPSG+WVAEIKDTT+KIRMWLGTFETAEEAARAYDEAACLL
Sbjct: 10  KTKEKSKG-NKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLL 69

Query: 83  RGSNTRTNFIPQFPTNSPIASRIRTLLNNKNKTPISKPMAADPT---------------- 142
           RGSNTRTNF   FP NS ++ +IR LL+ K      +     P                 
Sbjct: 70  RGSNTRTNFANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKPVSSLTDCNINYISTATS 129

Query: 143 --------------LEDVYKPDMSNCLEETEMGV-----WDCCSG--------------- 202
                         L +VY+PD S   +    G+     W   SG               
Sbjct: 130 LTTTTTTTTTTAIPLNNVYRPDSSVIGQPETEGLQLPYSWPLVSGFNHQIPLAQAGGETH 189

Query: 203 ----NGFSILEDFEMMKVERQISASLYAINGVHEYME------AVHQDPPSVWDLTPISS 205
               + +S  +   + ++ERQISASLYA+NG + Y +      A+      +WDL  +S 
Sbjct: 190 GHLNDHYSTDQHLGLAEIERQISASLYAMNGANSYYDNMNAEYAIFDPTDPIWDLPSLSQ 249

[Close]

BLAST of Sed0023810 vs. TAIR 10
Match: AT1G80580.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-16
Identity = 58/161 (36.02%), Postives = 80/161 (49.69%), Query Frame = 0


Query: 23  KSKGKSRGRNSKK----LVGIRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEA 82
           K  G  RGR   +     +G+R+RP GRW AEI+D   + R WLGTF+TAEEAARAYD A
Sbjct: 99  KEGGVKRGRKMPQKTGGFMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAA 158

Query: 83  ACLLRGSNTRTNFI--PQFPTNSPIA---SRIRTLLNNKNKTPISKPMAADPTLEDVYKP 142
           A  LRG+  +TNF+  P FP     A   +R+R     K K  +S       T       
Sbjct: 159 ARRLRGTKAKTNFVIPPLFPKEIAQAQEDNRMRQKQKKKKKKKVSVRKCVKVT------- 218

Query: 143 DMSNCLEETEMGVWDCCSGNGFSILEDFEMMKVERQISASL 175
            ++   ++          GN  S +++ E M +E  +S  L
Sbjct: 219 SVAQLFDDANFINSSSIKGNVISSIDNLEKMGLELDLSLGL 252

[Close]

BLAST of Sed0023810 vs. TAIR 10
Match: AT5G18560.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-15
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 21  TVKSKGKSRGRNSK-----KLVGIRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAY 80
           T  + G+ RGR SK     + +G+R+RP GR+ AEI+D T K R WLGTF+TA EAA AY
Sbjct: 35  TTTTTGERRGRRSKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAHEAALAY 94

Query: 81  DEAACLLRGSNTRTNFIPQFPTNSPIASRIRTLLNNKN 114
           D AA  +RG+  RTNF+   PT+      + T+L N N
Sbjct: 95  DRAALSMRGTQARTNFV-YTPTD------VHTILTNPN 125

[Close]

BLAST of Sed0023810 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-15
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 33 SKKLVGIRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNF 92
          +KK  G+RQR  G WVAEI+    K R+WLGTFETAEEAARAYDEAA L+ G N +TNF
Sbjct: 4  TKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNF 62

[Close]

BLAST of Sed0023810 vs. TAIR 10
Match: AT4G23750.1 (cytokinin response factor 2 )

HSP 1 Score: 79.3 bits (194), Expect = 3.9e-15
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 34  KKLVGIRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFI- 93
           KK  G+RQRP G+W AEI+D  K++R+WLGT+ TAEEAA  YD AA  LRG +  TNF  
Sbjct: 120 KKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSV 179

Query: 94  -------PQFPTNSPIASRIRTLLNNKNKTPIS 119
                   + P  SP+  + +   NNK+K  ++
Sbjct: 180 TPTTATEKKAPPPSPVKKKKKK--NNKSKKSVT 210

The following BLAST results are available for this feature:

BLAST of Sed0023810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603485.1	1.4e-67	64.63	Ethylene-responsive transcription factor ERN1, partial [Cucurbita argyrosperma s...	[more]
XP_022950635.1	7.0e-67	64.86	ethylene-responsive transcription factor RAP2-11-like [Cucurbita moschata]	[more]
XP_022978278.1	1.6e-66	64.16	ethylene-responsive transcription factor RAP2-11-like [Cucurbita maxima]	[more]
XP_023545037.1	3.5e-66	63.32	ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pep...	[more]
XP_038883288.1	4.3e-64	61.41	ethylene-responsive transcription factor ERN1-like [Benincasa hispida]	[more]

BLAST of Sed0023810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2Q5W1	1.1e-51	49.44	Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=...	[more]
A0A1X9PY88	6.2e-50	47.08	Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN...	[more]
Q6J9S1	7.8e-37	40.91	Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702...	[more]
A9Y0K8	4.3e-35	36.08	Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=...	[more]
A9Y0K9	5.8e-24	57.14	Ethylene-responsive transcription factor ERN3 OS=Medicago truncatula OX=3880 GN=...	[more]

BLAST of Sed0023810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGA9	3.4e-67	64.86	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1ISK7	7.6e-67	64.16	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1EE15	3.9e-63	56.15	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1HMY7	8.6e-63	54.89	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=366...	[more]
A0A5A7UZM7	3.6e-61	59.34	Ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo var. makuw...	[more]

BLAST of Sed0023810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19790.1	5.6e-38	40.91	related to AP2 11	[more]
AT1G80580.1	3.5e-16	36.02	Integrase-type DNA-binding superfamily protein	[more]
AT5G18560.1	1.0e-15	47.96	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	2.3e-15	66.10	Integrase-type DNA-binding superfamily protein	[more]
AT4G23750.1	3.9e-15	45.16	cytokinin response factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 58..74 score: 70.05 coord: 36..47 score: 44.85
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 35..98 e-value: 2.4E-34 score: 130.1
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 35..84 e-value: 4.7E-13 score: 49.2
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 35..92 score: 19.256021
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 34..91 e-value: 4.58408E-32 score: 108.898
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 35..93 e-value: 6.9E-22 score: 79.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..36
None	No IPR available	PANTHER	PTHR31194:SF1	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2	coord: 18..121 coord: 150..191
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 18..121 coord: 150..191
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 36..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023810.1	Sed0023810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity