Sed0023753 (gene) Chayote v1

Overview


Name	Sed0023753
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Histone H2A
Location	LG05: 40270379 .. 40271232 (-)
RNA-Seq Expression	Sed0023753
Synteny	Sed0023753

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACTTCAAATTCGTTCATCGCTTCACCACCGCCAATAAGATCCTCCGATAACTTTCCGGCGAGAAGAAGCCTTCATTTCTTGATCAATGGAGACCGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGTCGGTCTCTCGCTCCGTCAAGGCCGGGCTACAGTTCCCCGTCGGCCGTGTCGCTCGTTATCTGAAGAAAGGAAGATACGCACAGCGCGTCGGTACCGGCGCTCCGGTCTATTTGGCCGCCGTTATGGAGTATCTAGCCGCCGAGGTAACGAATCGTCATTTTCCTCTTCTAATTTCGTCATTCTCTTTCGAATCGGTACTGATCTGATCTTGCGTTTCTGGGATTTGTAGGTTTTGGAATTGGCCGGAAACGCTGCGAGAGACAACAAGAAGAACAGAATCATTCCAAGGCACGTGCTGTTGGCGATTAGGAATGACGAGGAGCTCGGAAAGTTGCTTGCCGGCGTAACGATTGCCAACGGCGGTGTTCTTCCGAACATCAACCCAGTTCTGTTGCCGAAGAAGACGGATAAGGCCGTGAAGGAAGCTCCGGCGAAGGCCGGCAAGTCGCCGAGCAAGGCTTAAATGGTAGATTACAGAGTTAGGGTTTGGTGAATCTGTAATTTATGATCCTGTTTTGGATTTGATGTTTTGTTTGTGTAAGTTAGATGAATTAGGGATTTGGAATGTGATACTGTTTTTGTTATGTCCGATTTATCAATTTACTGGCATGAATCAACCTGATGACTACATGCTAAAAACTTTACGGTTCAAACTAATTTTTTAACATCTATCAATTGAATGTTCTTATAAGCTAGCATGAGG

mRNA sequence

AGACTTCAAATTCGTTCATCGCTTCACCACCGCCAATAAGATCCTCCGATAACTTTCCGGCGAGAAGAAGCCTTCATTTCTTGATCAATGGAGACCGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGTCGGTCTCTCGCTCCGTCAAGGCCGGGCTACAGTTCCCCGTCGGCCGTGTCGCTCGTTATCTGAAGAAAGGAAGATACGCACAGCGCGTCGGTACCGGCGCTCCGGTCTATTTGGCCGCCGTTATGGAGTATCTAGCCGCCGAGGTTTTGGAATTGGCCGGAAACGCTGCGAGAGACAACAAGAAGAACAGAATCATTCCAAGGCACGTGCTGTTGGCGATTAGGAATGACGAGGAGCTCGGAAAGTTGCTTGCCGGCGTAACGATTGCCAACGGCGGTGTTCTTCCGAACATCAACCCAGTTCTGTTGCCGAAGAAGACGGATAAGGCCGTGAAGGAAGCTCCGGCGAAGGCCGGCAAGTCGCCGAGCAAGGCTTAAATGGTAGATTACAGAGTTAGGGTTTGGTGAATCTGTAATTTATGATCCTGTTTTGGATTTGATGTTTTGTTTGTGTAAGTTAGATGAATTAGGGATTTGGAATGTGATACTGTTTTTGTTATGTCCGATTTATCAATTTACTGGCATGAATCAACCTGATGACTACATGCTAAAAACTTTACGGTTCAAACTAATTTTTTAACATCTATCAATTGAATGTTCTTATAAGCTAGCATGAGG

Coding sequence (CDS)

ATGGAGACCGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGTCGGTCTCTCGCTCCGTCAAGGCCGGGCTACAGTTCCCCGTCGGCCGTGTCGCTCGTTATCTGAAGAAAGGAAGATACGCACAGCGCGTCGGTACCGGCGCTCCGGTCTATTTGGCCGCCGTTATGGAGTATCTAGCCGCCGAGGTTTTGGAATTGGCCGGAAACGCTGCGAGAGACAACAAGAAGAACAGAATCATTCCAAGGCACGTGCTGTTGGCGATTAGGAATGACGAGGAGCTCGGAAAGTTGCTTGCCGGCGTAACGATTGCCAACGGCGGTGTTCTTCCGAACATCAACCCAGTTCTGTTGCCGAAGAAGACGGATAAGGCCGTGAAGGAAGCTCCGGCGAAGGCCGGCAAGTCGCCGAGCAAGGCTTAA

Protein sequence

METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNINPVLLPKKTDKAVKEAPAKAGKSPSKA

Homology

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BLAST of Sed0023753 vs. NCBI nr
Match: XP_008448380.1 (PREDICTED: histone H2A [Cucumis melo])

HSP 1 Score: 259.2 bits (661), Expect = 2.1e-65
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           METGGKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGR+ARYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA+GGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKE--APAKAGKSPSKA 147
           PVLLPKKTDK  KE  +P+KAGKSPSKA
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSKA 148

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BLAST of Sed0023753 vs. NCBI nr
Match: XP_022943937.1 (histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.9 bits (655), Expect = 1.0e-64
Identity = 138/148 (93.24%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGR+ARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA+GGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKE--APAKAGKSPSKA 147
           PVLLPKKTDKA+KE  +P+KAGKSPSKA
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 148

[Close]

BLAST of Sed0023753 vs. NCBI nr
Match: XP_022986957.1 (histone H2A [Cucurbita maxima])

HSP 1 Score: 255.8 bits (652), Expect = 2.3e-64
Identity = 137/147 (93.20%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGR+ARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA+GGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKE--APAKAGKSPSK 146
           PVLLPKKTDKA+KE  +P+KAGKSPSK
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSK 147

[Close]

BLAST of Sed0023753 vs. NCBI nr
Match: XP_023532320.1 (histone H2A-like [Cucurbita pepo subsp. pepo] >XP_023532321.1 histone H2A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 135/148 (91.22%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGR+ARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA+GGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKE--APAKAGKSPSKA 147
           P+LLPKKTDKAVKE  +P+K GKSPSK+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 148

[Close]

BLAST of Sed0023753 vs. NCBI nr
Match: XP_023006960.1 (histone H2A-like [Cucurbita maxima])

HSP 1 Score: 252.7 bits (644), Expect = 2.0e-63
Identity = 135/148 (91.22%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGR+ARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA+GGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKE--APAKAGKSPSKA 147
           P+LLPKKTDKAVKE  +P+K GKSPSK+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 148

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BLAST of Sed0023753 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.3e-61
Identity = 127/149 (85.23%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           MET GKAKKG GGR+GG +KKSV+RSVKAGLQFPVGR+ RYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METAGKAKKGFGGRKGGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKK RIIPRH+LLA+RNDEELGKLLAGVT A+GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNIN 120

Query: 121 PVLLPKKT-DKAVKE--APAKAGKSPSKA 147
           PVLLPKKT +KA KE  +P+KAGKSP KA
Sbjct: 121 PVLLPKKTAEKAAKEPKSPSKAGKSPKKA 149

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BLAST of Sed0023753 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.8e-59
Identity = 120/148 (81.08%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           M+   K KKGAGGR+GG +KKSV+RS +AGLQFPVGR+ RYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   MDASTKTKKGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA+GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNIN 120

Query: 121 PVLLPKKTDKA--VKEAPAKAGKSPSKA 147
           P+LLPKK +KA    ++P+KA KSP KA
Sbjct: 121 PILLPKKNEKAATTTKSPSKATKSPKKA 148

[Close]

BLAST of Sed0023753 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.4e-58
Identity = 125/153 (81.70%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR-GGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYL 60
           M+TG K KKGAG R+ GG KKK VSRSVKAGLQFPVGR+ R+LKKGRYAQRVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA+GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTDKAVKEA------PAKAGKSPSKA 147
           NPVLLPKK +KA   A      PAKA KSP KA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

[Close]

BLAST of Sed0023753 vs. ExPASy Swiss-Prot
Match: P25469 (Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.2e-57
Identity = 117/142 (82.39%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 6   KAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLAAVMEY 65
           K  KGAGGR+GG +KKSV++S+KAGLQFPVGR+ RYLKKGRYAQRVG+GAP+YLAAV+EY
Sbjct: 5   KTTKGAGGRKGGPRKKSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEY 64

Query: 66  LAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNINPVLLP 125
           LAAEVLELAGNAARDNKK+RIIPRHVLLA+RNDEELGKLLAGVTIA+GGVLPNINPVLLP
Sbjct: 65  LAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLP 124

Query: 126 KKTDKAVKEAP-AKAGKSPSKA 147
           KK+  A +++P AKAGKSP KA
Sbjct: 125 KKSAVAEEKSPKAKAGKSPKKA 146

[Close]

BLAST of Sed0023753 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.2e-57
Identity = 122/153 (79.74%), Postives = 133/153 (86.93%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR-GGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYL 60
           M+   K KKGAGGR+ GG +KKSV+RS++AGLQFPVGR+ RYLKKGRYAQRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA+GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTD------KAVKEAPAKAGKSPSKA 147
           NPVLLPKKT+      K  K    KAGKSP KA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]

BLAST of Sed0023753 vs. ExPASy TrEMBL
Match: A0A1S3BK65 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.0e-65
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           METGGKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGR+ARYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA+GGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKE--APAKAGKSPSKA 147
           PVLLPKKTDK  KE  +P+KAGKSPSKA
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSKA 148

[Close]

BLAST of Sed0023753 vs. ExPASy TrEMBL
Match: A0A6J1FUE6 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.0e-65
Identity = 138/148 (93.24%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGR+ARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA+GGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKE--APAKAGKSPSKA 147
           PVLLPKKTDKA+KE  +P+KAGKSPSKA
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 148

[Close]

BLAST of Sed0023753 vs. ExPASy TrEMBL
Match: A0A6J1J904 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 137/147 (93.20%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGR+ARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA+GGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKE--APAKAGKSPSK 146
           PVLLPKKTDKA+KE  +P+KAGKSPSK
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSK 147

[Close]

BLAST of Sed0023753 vs. ExPASy TrEMBL
Match: A0A6J1L1N2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.5e-64
Identity = 135/148 (91.22%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGR+ARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA+GGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKE--APAKAGKSPSKA 147
           P+LLPKKTDKAVKE  +P+K GKSPSK+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 148

[Close]

BLAST of Sed0023753 vs. ExPASy TrEMBL
Match: A0A6J1G6M6 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111451351 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.5e-64
Identity = 135/148 (91.22%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGR+ARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA+GGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKE--APAKAGKSPSKA 147
           P+LLPKKTDKAVKE  +P+K GKSPSK+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 148

[Close]

BLAST of Sed0023753 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 218.0 bits (554), Expect = 5.0e-57
Identity = 118/153 (77.12%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVY 60
           M++G K KKGA GRR  GG KKK VSRSVK+GLQFPVGR+ RYLKKGRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPN 120
           LAAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIA+GGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKTDKAVK-----EAPAKAGKSPSKA 147
           INP+LLPKK++KA       ++P+KA KSP K+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of Sed0023753 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 207.2 bits (526), Expect = 8.8e-54
Identity = 112/142 (78.87%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 6   KAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLAAVMEY 65
           K  +GAGGR+GG++KKSVS+SVKAGLQFPVGR+ARYLKKGRYA R G+GAPVYLAAV+EY
Sbjct: 9   KPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEY 68

Query: 66  LAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNINPVLLP 125
           LAAEVLELAGNAARDNKKNRI PRH+ LAIRNDEELG+LL GVTIA+GGVLPNINPVLLP
Sbjct: 69  LAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLP 128

Query: 126 KKTDKAVKEA-PAKAGKSPSKA 147
           KK+  +  +A  A A KSP KA
Sbjct: 129 KKSTASSSQAEKASATKSPKKA 150

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BLAST of Sed0023753 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 204.5 bits (519), Expect = 5.7e-53
Identity = 118/177 (66.67%), Postives = 134/177 (75.71%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVY 60
           M++G K KKGA GRR  GG KKK VSRSVK+GLQFPVGR+ RYLKKGRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAV+EYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 IRNDEELGKLLAGVTIANGGVLPNINPVLLPKKTDKAVK-----EAPAKAGKSPSKA 147
           +RNDEELG LL GVTIA+GGVLPNINP+LLPKK++KA       ++P+KA KSP K+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of Sed0023753 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 202.2 bits (513), Expect = 2.8e-52
Identity = 113/148 (76.35%), Postives = 128/148 (86.49%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVY 60
           ME+ GK KK  GGR+  G  K KSVS+S+KAGLQFPVGR+ R+LKKGRYAQR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPN 120
           +AAV+EYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIA+GGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKTDKAVKEAPAKAGKSPSKA 147
           IN VLLPKK+  A K A  KA KSP K+
Sbjct: 121 INSVLLPKKS--ATKPAEEKATKSPVKS 146

[Close]

BLAST of Sed0023753 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 177.9 bits (450), Expect = 5.7e-45
Identity = 88/112 (78.57%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 17  GEKKKSVSRSVKAGLQFPVGRVARYLKKGRYAQRVGTGAPVYLAAVMEYLAAEVLELAGN 76
           G  KK+ +RS KAGLQFPVGR+AR+LKKG+YA+RVG GAPVYLAAV+EYLAAEVLELAGN
Sbjct: 11  GSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 77  AARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIANGGVLPNINPVLLPKKT 129
           AARDNKK RI+PRH+ LA+RNDEEL KLL  VTIANGGV+PNI+ +LLPKKT
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:

BLAST of Sed0023753 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448380.1	2.1e-65	93.92	PREDICTED: histone H2A [Cucumis melo]	[more]
XP_022943937.1	1.0e-64	93.24	histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo sub...	[more]
XP_022986957.1	2.3e-64	93.20	histone H2A [Cucurbita maxima]	[more]
XP_023532320.1	2.0e-63	91.22	histone H2A-like [Cucurbita pepo subsp. pepo] >XP_023532321.1 histone H2A-like [...	[more]
XP_023006960.1	2.0e-63	91.22	histone H2A-like [Cucurbita maxima]	[more]

BLAST of Sed0023753 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19177	3.3e-61	85.23	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]
Q2HU68	6.8e-59	81.08	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
Q9M531	4.4e-58	81.70	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P25469	2.2e-57	82.39	Histone H2A.1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
Q2HU65	2.2e-57	79.74	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]

BLAST of Sed0023753 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK65	1.0e-65	93.92	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1	[more]
A0A6J1FUE6	5.0e-65	93.24	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1	[more]
A0A6J1J904	1.1e-64	93.20	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1	[more]
A0A6J1L1N2	9.5e-64	91.22	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1	[more]
A0A6J1G6M6	9.5e-64	91.22	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111451351 PE=3 SV=1	[more]

BLAST of Sed0023753 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	5.0e-57	77.12	histone H2A 12	[more]
AT5G27670.1	8.8e-54	78.87	histone H2A 7	[more]
AT5G02560.2	5.7e-53	66.67	histone H2A 12	[more]
AT5G59870.1	2.8e-52	76.35	histone H2A 6	[more]
AT1G51060.1	5.7e-45	78.57	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 50..65 score: 81.37 coord: 65..78 score: 89.46 coord: 107..125 score: 75.54 coord: 21..43 score: 70.02 coord: 79..93 score: 73.78
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 10..130 e-value: 5.1E-79 score: 278.5
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 19..127 e-value: 2.78168E-66 score: 195.246
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 16..96 e-value: 2.3E-14 score: 53.9
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 99..132 e-value: 1.6E-18 score: 66.1
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 6..137 e-value: 2.6E-64 score: 216.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR23430:SF234	HISTONE H2A	coord: 9..145
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 9..145
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 29..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023753.1	Sed0023753.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity