Sed0023730 (gene) Chayote v1

Overview
NameSed0023730
Typegene
OrganismSechium edule (Chayote v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
LocationLG05: 33884561 .. 33889013 (+)
RNA-Seq ExpressionSed0023730
SyntenySed0023730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGGAAATAAAAACAGAAAAGAAAAGAAAAGAAAACCACCAATTTTGTCGAGCTGCGGCGGCTGGGTTTAGCATTTGAATGCCCTAAATCTGGAAACTGAACTCTGTTCATTGTGGCTGGTTCTATACAATTTGTTGTCAAATTCTCCGATTTTCCTATGGCTTCCTTCGCCGCCAGGTCCATTTTCCGATCATCTTCCGGCAGGGCTGCAACTCTTCTGAGCGCCGGAGCCAAAGCAGCTCCGGCTCGTTCACCATTTCGCAATGCTTCTAAACGACCTTTCTCTCAGTGTGCCATAAGGTAATTTCCTCAATAGCATTCGATTTCTACTAATTGTGCTCAAACTAAATTCACCGTGAAAATTGCGAGTTGATTTGAGTACATATAAGCGTGATGATTGGAATGAATGCTGAAATGAGTAGAGAAATTAAGCTGAATTTTCTCGTTTGTGATTCGTTTTCATGTGAAGGATTCCAGCTGAAATGAGCTTCTGTGTGGAGTCTATGCTTCCGTTTCATTCTGCTACTTCCTCAGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGCTGGCTTTCAGAAGGTACTTTCAGCCTCTTTCTTTTCTTTTTGCAGTTTATTGGAATAGGACTAAGTTATGAACTATATTTTGCGTGCTCTGCAATTTTACTATGTTACATTTTACTCTTTTTATTGTTATGCTGTCAGTTTAATCCTTCGGTTTCTGGTTTTTTGTGGCAAAAATTTTGATCTTCTGTGTTGATTGAATAGCTTTATTAGTTACTTGGATTGCCCATGTGGTGTGGTGTACATGTTAGGCACATAATTGATCCTATACATTTGGACATTAGAATGAGAAAGAGGAGGAGAAGATAATGAAGGGAGGGTTTTTTTATAACAAGAAATACAAACTTTTCGTTGATATTATAAAAGTTACTAGAAACCAAAATCCAGTAAGAAGCCTAACTAGGTGGATTTATAAAGGAAGAACAAAGAGATTAGCTTTTGTAATTCATTCAATCACAATTTTCACCAACAGTTTCAAAAGAAGAGTAAAAACTATTTAGAGAATAGTTGTCCAAATATGACTAATTCATAAGAAACGAGAACAATTTTGTTGTCATCAAAAGTATATTCTATCAAGAATAGTTACAAAAATAAATCTCCCATTAGATAAGAGGATCAATAAACCAGAATTACAATCTCCCATTAGAGGCAGAGAAGCTTGTTGTTAGGTCTTTTGTTTTTCTGTAAAGATCTAGATTCTAGAGTTTCTTTCCAGCCAAAGGTTCCATAAAAAGGAGTATATAAAGTTGATCTAGAGAGTCTTCTTTCATTCTTGAAAGATGCCCCAAAAAAGAGGTATTGGGGAGAGAGAAGATGACCCCTAGCCAAACAAAGATCCATCCAAAAGCTTGCTAGATGAACTATGAAGGACCAGAAAGCAGAAGCATATGTGCAGTTGTCTGCTGAAGAGGTGAGTTAGGGATTGGTTATTCTTCAAGCAAGGGTGGCAGAAACTAGGGGAGATAAGAATTTAAGGAGGCTGTTGTTGTACATTGTCATATGTGTTAACACTGGTGTGACTAGGCTCCACACGATAACCTTCTCGGGAATTGCCTATTCTCAAATTTTCTCTTGCACGCCAACAAACTTAGAAAAGGTGCCCTCTTTTTTCAAAAGTGCATCCACTAATTTTCTTGGTTAGTAATTGTCATTGCCAAGGATTATAAGATATGTGAAAGAGAGGGCCATTCTTGAATTTCTGCGTTGCCTTTATTTAGGTTTCTTCTCAAGTATAAATTCAAGAATCATTTCCCTCATTCCATAGCTCTTTGATAAAAGGGTTTTTTTTAATTAATATTTTCTGGCAAAGCTGATATAAGGCCAAAAAAATAGATTGCGGACTTTAGTTTTCTTATTTTTCTAATCAAAACAATGTCTCATCACCTCAGCCAATGTTGTTAGAGATGTTATTGTCAACCCAATTTTGTAGATTGTGAATGGATTTCCATGGCTCCTATATTCAACGAATTCTTGCCCAACTTCAATCAATGTGGCTGGAGCCAAGTTTTCAACAATCACTACGCCCAAAAACAATTTTTTCATTATGGTACCTCCATATCCATTTTTCTATGGAAGAAATATTACACGTGTATATCAAATATATCCAAGCCCCCTTCCTAGTCCCTTAATAGGGGATTTAACTATAGGCCATCTATGTTTCAAAAAAGAAAAACCTATAGGTCATCTCAATTCTGAAAAGATGATAACCTTTTCTCCATGCCCTCCACGCCAAAGAATTTTTTTGAATAATTTCTCATTGATTTCTGTGACTCTAGAAGGAGCAATAAATATGAAGAAATAATAAATCGAGAGGTTAGATAATGTAGTTGGGATGAGTGTGAGTCTACCTCCTTTTGAGATCTTCGTGGTTTCCCAAGTGTGGAGCATTTTCTCATTTTTTTCGATAACAAGGGTCCATATGCTTATAGTATCAAGGTCACCATTCACAAGGGAGGCCAAGATATGTAGAATGCCAGCTGCCTTATGTATCCAACAAATGACGCAAGAGATTGAGCCTCGAACATTATATCCTGAATGCTCTGTTACATCCTTACACGAACATGGTCTATTCTGTAGATTGTACAATTGTTTCCTTGAGTTCTATTCTAAATGCTCTTTTGGCTTGATTATTAGGTAAAAATGTCCTATCTGACCTCTTCTTGTTTTCTACCCTTTTCATATAATGAGTTGAGAATTTTAGTTTAGTGACTAAAGATCAAAATTAAATGTTGCATCCTAGATTTTTTTTTTCAAGACTGTTCGGGCCAACTTCTAGATTAATTAGGGGCAAAGTTCTTTAAAGCTAAACATACAGTTGGTTGTTTGCAATGAATGTCTTCCTCTCGCTATAACTTATGATTTAGCTGCATATACGTTGTGTTTGTATGCATTTAGTCACAACTATTTCATCCACGTACTTGATATCAAACGCAAGGATACTAATTGTAATGTTTAATCAGTGTTCAATGATGATGTGTGATGAATGGTCAAAGGGATTCGAGAGAAGTTTTGTATTCAGAGTTCCACATTATGACAGTGGCTGCTGCTAAAACTTAGATGAGCTGATGCACAATGATTTAGTTTTCCATGTCTTGAATTTTTAGTGTGTAACCATGGACCACTAGAATGTATAGGAAGAATGTCAGTAGACAGACATTTTCCTTTTCTTTGAAAAGGAGGCTTCAAAATAAAAATTGGGCTTGTGTCGTCATTATGTTGGATTCCCTTATAGAAATGTCTTGCAATCATGAAATAAAAATTCTTATGGAGATGAGACTTGGAGATTTTTCTCTAGCATTCATTATTTTATCTTGTATGTTACTCTATGCTTGCTTCTTCTTTGTAGATGCTTTCATATTTCTGATGGATGTTGGTACGGTTCTAGGATGTGTTTGGATAGATGGTTTATGAGAATGCATTCTGGGGTTGACCTAATTCCACGTTTGAATGAAGCCGCTCCTAAAAGCTCCCAAAAACTCCTCATTAAAATCTCAATAAACCCCTTCATAACCTTATAAACCCTCTAGATACAATATCACTTCTACTTCAATTATTTATAACCCTTCAATCCAGACGATAGTTTTCTACCACAGCCATTCATAATTCTTAATCCAAAAGAGAGTTTTCTGTTACAACCACTTATAACCCCTCTATTCAAATTAGAGTTTTTGCCGTTACCACTCATAACTCATGTATCCAAATAAGAGTTTCTCCTACCATCACTCACAACCCATCAATCCAAACATGATTTTATCTACACCAAATCCCTCCTAACCTCAACACCCCTCCTAACTACTACCTTTCATTTCCCAAACACTCTATCCAAACACACCCCAAAAAGTTGTTATATACTAAATATTAAATATTAACTGGAAATTATTTATCAAATTCATAGCTGCTAGGTGAATCCCAATCAAATTTTCTGGTGTCGTGTATAGCCATTGATACTAATTGGTGAATAGCTGTACTCTACTTGGTTTTTTGTTCATTTATATGCCTAAAGATATATATTAAAGAGTTAGGAATATAATCCTGTCACATGTTTAACGCCATTTAAAATCTATGTGGCAGTGACTGGTTTGGAAACTTCATGATGTTGGTTGGATATTCTTCAATCTCCTGGACAACACACATTCACCCAAGTAATTTCATTTCAACAAGGAGTTAAAAGCTTCACCTGGCAGCCCCCTTCATTTCTAGTTAATTTTTTATTTTTGGGGTTGATATTTGTAGTCCGGGAACTTTAGTTTATTTAAACTTCGTGACAATTTAGTCCATTTTGAGAAAAATATTATTAAGATTTCATGGAATTTGTTACATATGCTGATCCATAAAATGAAAAAGGCTATATTATCTTGTATTTATAAACTACAAAGAC

mRNA sequence

GAAGGAAATAAAAACAGAAAAGAAAAGAAAAGAAAACCACCAATTTTGTCGAGCTGCGGCGGCTGGGTTTAGCATTTGAATGCCCTAAATCTGGAAACTGAACTCTGTTCATTGTGGCTGGTTCTATACAATTTGTTGTCAAATTCTCCGATTTTCCTATGGCTTCCTTCGCCGCCAGGTCCATTTTCCGATCATCTTCCGGCAGGGCTGCAACTCTTCTGAGCGCCGGAGCCAAAGCAGCTCCGGCTCGTTCACCATTTCGCAATGCTTCTAAACGACCTTTCTCTCAGTGTGCCATAAGGATTCCAGCTGAAATGAGCTTCTGTGTGGAGTCTATGCTTCCGTTTCATTCTGCTACTTCCTCAGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGCTGGCTTTCAGAAGTGACTGGTTTGGAAACTTCATGATGTTGGTTGGATATTCTTCAATCTCCTGGACAACACACATTCACCCAAGTAATTTCATTTCAACAAGGAGTTAAAAGCTTCACCTGGCAGCCCCCTTCATTTCTAGTTAATTTTTTATTTTTGGGGTTGATATTTGTAGTCCGGGAACTTTAGTTTATTTAAACTTCGTGACAATTTAGTCCATTTTGAGAAAAATATTATTAAGATTTCATGGAATTTGTTACATATGCTGATCCATAAAATGAAAAAGGCTATATTATCTTGTATTTATAAACTACAAAGAC

Coding sequence (CDS)

ATGGCTTCCTTCGCCGCCAGGTCCATTTTCCGATCATCTTCCGGCAGGGCTGCAACTCTTCTGAGCGCCGGAGCCAAAGCAGCTCCGGCTCGTTCACCATTTCGCAATGCTTCTAAACGACCTTTCTCTCAGTGTGCCATAAGGATTCCAGCTGAAATGAGCTTCTGTGTGGAGTCTATGCTTCCGTTTCATTCTGCTACTTCCTCAGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGCTGGCTTTCAGAAGTGACTGGTTTGGAAACTTCATGA

Protein sequence

MASFAARSIFRSSSGRAATLLSAGAKAAPARSPFRNASKRPFSQCAIRIPAEMSFCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLETS
Homology
[Close]
BLAST of Sed0023730 vs. NCBI nr
Match: XP_038887455.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida])

HSP 1 Score: 157.9 bits (398), Expect = 4.3e-35
Identity = 83/95 (87.37%), Postives = 90/95 (94.74%), Query Frame = 0 

Query: 1  MASFAARSIFRSSSGRAATLLSAGAKAAPARSPFRNASKRPFSQCAIRIPAEMSFCVESM 60
          MASFA R+IFRSSSG+AATLLS GA+AAPARSPFR ASKRPFSQC++RIP EMSFCVESM
Sbjct: 1  MASFAGRAIFRSSSGKAATLLSVGARAAPARSPFRIASKRPFSQCSVRIPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLETS 96
          LPFHSATSSALM SMLSVSRH+YGWLSEVTGL+TS
Sbjct: 61 LPFHSATSSALMISMLSVSRHNYGWLSEVTGLQTS 95

[Close]
BLAST of Sed0023730 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.6 bits (392), Expect = 2.1e-34
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 1  MASFAARSIFRSSSGRAATLLSAGAKAAPARSPFRNASKRPFSQCAIRIPAEMSFCVESM 60
          MASFAAR+I RSS G+AATLLS GA+AAPARSPFR ASKRP SQCA+R+P EMSFCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLETS 96
          LPFHSATSSALMTSMLSVSRHSYGWLSEVTGL+TS
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Sed0023730 vs. NCBI nr
Match: XP_022969309.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 3.6e-34
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 1  MASFAARSIFRSSSGRAATLLSAGAKAAPARSPFRNASKRPFSQCAIRIPAEMSFCVESM 60
          MASFAAR+I RSS GRAATLLS G++AAPARS FR ASKRPFSQCA+R+P EMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLETS 96
          LPFHSATSSALMTSMLSVSRHSYGWLSEVTGL+TS
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Sed0023730 vs. NCBI nr
Match: XP_008459321.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 82/95 (86.32%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1  MASFAARSIFRSSSGRAATLLSAGAKAAPARSPFRNASKRPFSQCAIRIPAEMSFCVESM 60
          MASFAAR+IFRSSSG+ ATLLSAGA+AAPARSPFR ASKRPFS  + RIP EMSFCVESM
Sbjct: 1  MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLETS 96
          LPFHSATSSALMTSMLSVS HSYGWLSEV+GL+TS
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEVSGLQTS 95

[Close]
BLAST of Sed0023730 vs. NCBI nr
Match: XP_004148697.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1  MASFAARSIFRSSSGRAATLLSAGAKAAPARSPFRNASKRPFSQCAIRIPAEMSFCVESM 60
          MASFAARSIFRSSS +AATLLSAGA+AAPA SPFR ASKRPFS C+ R+P E+SFCVESM
Sbjct: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLETS 96
          LPFHSATSSALMTSMLSVS HS+GWLSEV+GL+TS
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEVSGLQTS 95

[Close]
BLAST of Sed0023730 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-11
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 6  ARSIFRSSSGRAATLLSAGAKAAPARSP---FRNASKRPFSQCAIRIPAEMSFCVESMLP 65
          ARS+ R++S R+A   S G  A+ A+S    FR  ++R      +R P E+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSE 89
          +HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of Sed0023730 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.8e-34
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 1  MASFAARSIFRSSSGRAATLLSAGAKAAPARSPFRNASKRPFSQCAIRIPAEMSFCVESM 60
          MASFAAR+I RSS GRAATLLS G++AAPARS FR ASKRPFSQCA+R+P EMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLETS 96
          LPFHSATSSALMTSMLSVSRHSYGWLSEVTGL+TS
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Sed0023730 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 82/95 (86.32%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1  MASFAARSIFRSSSGRAATLLSAGAKAAPARSPFRNASKRPFSQCAIRIPAEMSFCVESM 60
          MASFAAR+IFRSSSG+ ATLLSAGA+AAPARSPFR ASKRPFS  + RIP EMSFCVESM
Sbjct: 1  MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLETS 96
          LPFHSATSSALMTSMLSVS HSYGWLSEV+GL+TS
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEVSGLQTS 95

[Close]
BLAST of Sed0023730 vs. ExPASy TrEMBL
Match: A0A6J1GM36 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.4e-33
Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1  MASFAARSIFRSSSGRAATLLSAGAKAAPARSPFRNASKRPFSQCAIRIPAEMSFCVESM 60
          MASFAAR+I RSS G+AATLLS G++AAPARS FR A+KRPFSQCA+R+P EMS CVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLETS 96
          LPFHSATSSALMTSMLSVSRHSYGWLSEVTGL+TS
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Sed0023730 vs. ExPASy TrEMBL
Match: A0A6J1HZK6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 0 

Query: 1  MASFAARSIFRSSSGRAATLLSAGAKAAPARSPFRNASKRPFSQCAIRIPAEMSFCVESM 60
          MASFAAR+I RSS GRAATLLS G++AAPARS FR ASKRPFSQCA+R+P EMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 90
          LPFHSATSSALMTSMLSVSRHSYGWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEV 89

[Close]
BLAST of Sed0023730 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.3e-31
Identity = 79/92 (85.87%), Postives = 83/92 (90.22%), Query Frame = 0 

Query: 1  MASFAARSIFRSSSGRAATLLSAGAKAAPARSPFRNASKRPFSQCAIRIPAEMSFCVESM 60
          MASFAAR+IFRSSSG+AATLLSAGA+AAPARSPFR ASKRPFS  + RIP EMSFCVESM
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEVTGL 93
          LPFHSATSSALMTSMLSVS HSYGWLSE   L
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEAAFL 92

[Close]
BLAST of Sed0023730 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 70.5 bits (171), Expect = 8.4e-13
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 6  ARSIFRSSSGRAATLLSAGAKAAPARSP---FRNASKRPFSQCAIRIPAEMSFCVESMLP 65
          ARS+ R++S R+A   S G  A+ A+S    FR  ++R      +R P E+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSE 89
          +HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of Sed0023730 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 )

HSP 1 Score: 70.5 bits (171), Expect = 8.4e-13
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 6  ARSIFRSSSGRAATLLSAGAKAAPARSP---FRNASKRPFSQCAIRIPAEMSFCVESMLP 65
          ARS+ R++S R+A   S G  A+ A+S    FR  ++R      +R P E+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSE 89
          +HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of Sed0023730 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 )

HSP 1 Score: 70.5 bits (171), Expect = 8.4e-13
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 6  ARSIFRSSSGRAATLLSAGAKAAPARSP---FRNASKRPFSQCAIRIPAEMSFCVESMLP 65
          ARS+ R++S R+A   S G  A+ A+S    FR  ++R      +R P E+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSE 89
          +HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of Sed0023730 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 0 

Query: 5  AARSIFRSSSGRAATL---LSAGAKAAP--ARSPFRNASKRPFSQCAIRIPAEMSFCVES 64
          AARS+FRS++ RA++     SAG K  P  AR+ FR   + P +    R P E+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLE 94
          MLP+H+AT+SAL+ SMLSVSR   GW+  V GL+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI--VDGLD 92

[Close]
BLAST of Sed0023730 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 0 

Query: 5  AARSIFRSSSGRAATL---LSAGAKAAP--ARSPFRNASKRPFSQCAIRIPAEMSFCVES 64
          AARS+FRS++ RA++     SAG K  P  AR+ FR   + P +    R P E+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLE 94
          MLP+H+AT+SAL+ SMLSVSR   GW+  V GL+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI--VDGLD 92

The following BLAST results are available for this feature:
BLAST of Sed0023730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887455.14.3e-3587.37protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa his... [more]
XP_023554650.12.1e-3487.37protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022969309.13.6e-3487.37protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_008459321.14.0e-3386.32PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ... [more]
XP_004148697.11.2e-3284.21protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucu... [more]
BLAST of Sed0023730 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZJ31.2e-1151.16Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of Sed0023730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I2781.8e-3487.37protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A1S3CB401.9e-3386.32protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1GM367.4e-3384.21protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1HZK61.4e-3187.64protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A5A7TDD15.3e-3185.87Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
BLAST of Sed0023730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20585.18.4e-1351.16nuclear fusion defective 6 [more]
AT2G20585.28.4e-1351.16nuclear fusion defective 6 [more]
AT2G20585.38.4e-1351.16nuclear fusion defective 6 [more]
AT1G28395.21.1e-1250.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.11.1e-1250.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033251Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrialPANTHERPTHR33156:SF48PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIALcoord: 3..88
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 3..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023730.1Sed0023730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000741 karyogamy
cellular_component GO:0016021 integral component of membrane