Sed0023688 (gene) Chayote v1

Overview
NameSed0023688
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG05: 41971244 .. 41971858 (+)
RNA-Seq ExpressionSed0023688
SyntenySed0023688
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAACGCAAAAAAAAAAAAAAAAATCCATTTCTCAGCGGTATATATATTTTGGTGGCCACAAGAACTCTTCAATTCCACTCCCGAAAAATCAAACTCCCTCACAAACCCTAATCATGGCCGTTTCAATACGACTCGCCCTTCTCTCCCTCGCCACGACAATCCTAATCCTCTGCTTCTTCTTCACCAGAACCGCCGCCGTCGCCTCCGCCGTCCCCGACGGCGACTCCAACGCCGTCGAAAACGCCTGCCACGGCGAGAGCTCCGACAAAGGCGACCAGTGCACGGAACAACCCTCCGGCGCTGACGACGACGAAGACGACGATTTCGATGACACCTACAAGTTCGTCGACAACGTCGCCGTGAAGCTGTCGGCGTCCGGCAGCATTTACCATTGGGTGGAGAAAGCGTGAGATTAACCGTCGTCGGAGGAAGAGCACGGCGGCGAAACCTGCCATGTTTTCTTTCTCCTTCTTCTTCGTTTGGTTAATTACTTTTATGCCCTTTTAGTTATTTCTTTCTATTTTAATTCCCTCATTTATTATCGTCTTTGGTTTTTTTTTTTTTTTTGCTTGCGGCATAAGACAATTGGTTGCTGGTGGATCTCATTGGTGT

mRNA sequence

AAGAAACGCAAAAAAAAAAAAAAAAATCCATTTCTCAGCGGTATATATATTTTGGTGGCCACAAGAACTCTTCAATTCCACTCCCGAAAAATCAAACTCCCTCACAAACCCTAATCATGGCCGTTTCAATACGACTCGCCCTTCTCTCCCTCGCCACGACAATCCTAATCCTCTGCTTCTTCTTCACCAGAACCGCCGCCGTCGCCTCCGCCGTCCCCGACGGCGACTCCAACGCCGTCGAAAACGCCTGCCACGGCGAGAGCTCCGACAAAGGCGACCAGTGCACGGAACAACCCTCCGGCGCTGACGACGACGAAGACGACGATTTCGATGACACCTACAAGTTCGTCGACAACGTCGCCGTGAAGCTGTCGGCGTCCGGCAGCATTTACCATTGGGTGGAGAAAGCGTGAGATTAACCGTCGTCGGAGGAAGAGCACGGCGGCGAAACCTGCCATGTTTTCTTTCTCCTTCTTCTTCGTTTGGTTAATTACTTTTATGCCCTTTTAGTTATTTCTTTCTATTTTAATTCCCTCATTTATTATCGTCTTTGGTTTTTTTTTTTTTTTTGCTTGCGGCATAAGACAATTGGTTGCTGGTGGATCTCATTGGTGT

Coding sequence (CDS)

ATGGCCGTTTCAATACGACTCGCCCTTCTCTCCCTCGCCACGACAATCCTAATCCTCTGCTTCTTCTTCACCAGAACCGCCGCCGTCGCCTCCGCCGTCCCCGACGGCGACTCCAACGCCGTCGAAAACGCCTGCCACGGCGAGAGCTCCGACAAAGGCGACCAGTGCACGGAACAACCCTCCGGCGCTGACGACGACGAAGACGACGATTTCGATGACACCTACAAGTTCGTCGACAACGTCGCCGTGAAGCTGTCGGCGTCCGGCAGCATTTACCATTGGGTGGAGAAAGCGTGA

Protein sequence

MAVSIRLALLSLATTILILCFFFTRTAAVASAVPDGDSNAVENACHGESSDKGDQCTEQPSGADDDEDDDFDDTYKFVDNVAVKLSASGSIYHWVEKA
Homology
BLAST of Sed0023688 vs. NCBI nr
Match: KAG6570557.1 (hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-08
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 0

Query: 1  MAVSIRLALLSLATTILILCFFFTRTAAVASAVPDGDSNAVENA-----CHGESSDKGDQ 60
          MAVS RLALLSL T  ++LC  FTR AA+A +    D + V ++     C+ E   KGDQ
Sbjct: 1  MAVSRRLALLSLGT--ILLCLLFTR-AAIAESDYGDDIHTVRHSSDSDNCNREQPYKGDQ 60

Query: 61 CTEQPSGADDDEDDDFDDTYKFVDNVAVKLSASGS 91
          C E+  G    ED+DFDDTYK V+NVA++LSASGS
Sbjct: 61 CREENDGV---EDEDFDDTYKIVNNVAIRLSASGS 89

BLAST of Sed0023688 vs. NCBI nr
Match: KAA0054503.1 (hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK14536.1 hypothetical protein E5676_scaffold552G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 8.1e-05
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 0

Query: 1  MAVSIRLAL-LSLATTILILCFFFTRTAAVASAVPDGDSNAVENA-----CHGESSDKGD 60
          MA+S RLAL LSL T  ++  F FTR +A  S     D + V +      C  E  DKGD
Sbjct: 1  MAISRRLALILSLGT--ILFSFLFTRVSAAGSDY-GNDIHTVRHPSDTADCKREHLDKGD 60

Query: 61 QCTEQPSGADDD--EDDDFDDTYKFVDNVAVKLSASGSI 92
          QC E     D+D  EDDDFDDTYK V+N+A+ LSASGSI
Sbjct: 61 QCRE-----DNDLFEDDDFDDTYKIVNNIAITLSASGSI 91

BLAST of Sed0023688 vs. NCBI nr
Match: KAG6604744.1 (hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 8.1e-05
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 0

Query: 1  MAVSIRLALLSLATTILILCFFFTRTAAVASAVPDGDSNAVE-NACHGESSDKGDQCTEQ 60
          MAVS RLAL SL T  ++LCF  TR AAVA +    + + V  ++   + S+K  QC ++
Sbjct: 1  MAVSRRLALFSLGT--ILLCFLITR-AAVADSDHGHNVHVVRYSSAATDESEKAHQCRQE 60

Query: 61 PSGADDDEDDDFDDTYKFVDNVAVKLSASGSI 92
              +DD DDDFDDTYK V+N+A+ LSASG I
Sbjct: 61 ----NDDVDDDFDDTYKIVNNIAITLSASGRI 85

BLAST of Sed0023688 vs. NCBI nr
Match: KAE8646929.1 (hypothetical protein Csa_021071 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 46/96 (47.92%), Postives = 55/96 (57.29%), Query Frame = 0

Query: 1  MAVSIRLALLSLATTILILCFFFTRTAAVASAVPDGDSNAVEN-----ACHGESSDKGDQ 60
          MA+S RL L+    TIL  CF F   +A A      D + V++      C  E  DKGDQ
Sbjct: 1  MAISRRLPLILTLGTIL-FCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQ 60

Query: 61 CTEQPSGADDDEDDDFDDTYKFVDNVAVKLSASGSI 92
          C E+    D  EDDDFDDTYK V+N+AV LSASG I
Sbjct: 61 CREE---NDLFEDDDFDDTYKIVNNIAVTLSASGRI 92

BLAST of Sed0023688 vs. ExPASy TrEMBL
Match: A0A5D3CVV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00150 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.9e-05
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 0

Query: 1  MAVSIRLAL-LSLATTILILCFFFTRTAAVASAVPDGDSNAVENA-----CHGESSDKGD 60
          MA+S RLAL LSL T  ++  F FTR +A  S     D + V +      C  E  DKGD
Sbjct: 1  MAISRRLALILSLGT--ILFSFLFTRVSAAGSDY-GNDIHTVRHPSDTADCKREHLDKGD 60

Query: 61 QCTEQPSGADDD--EDDDFDDTYKFVDNVAVKLSASGSI 92
          QC E     D+D  EDDDFDDTYK V+N+A+ LSASGSI
Sbjct: 61 QCRE-----DNDLFEDDDFDDTYKIVNNIAITLSASGSI 91

BLAST of Sed0023688 vs. ExPASy TrEMBL
Match: A0A0A0KGZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.7e-05
Identity = 46/96 (47.92%), Postives = 55/96 (57.29%), Query Frame = 0

Query: 1  MAVSIRLALLSLATTILILCFFFTRTAAVASAVPDGDSNAVEN-----ACHGESSDKGDQ 60
          MA+S RL L+    TIL  CF F   +A A      D + V++      C  E  DKGDQ
Sbjct: 1  MAISRRLPLILTLGTIL-FCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQ 60

Query: 61 CTEQPSGADDDEDDDFDDTYKFVDNVAVKLSASGSI 92
          C E+    D  EDDDFDDTYK V+N+AV LSASG I
Sbjct: 61 CREE---NDLFEDDDFDDTYKIVNNIAVTLSASGRI 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6570557.12.7e-0852.63hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0054503.18.1e-0550.51hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK1453... [more]
KAG6604744.18.1e-0548.91hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646929.11.4e-0447.92hypothetical protein Csa_021071 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CVV23.9e-0550.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KGZ46.7e-0547.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023688.1Sed0023688.1mRNA