Sed0023649 (gene) Chayote v1

Overview


Name	Sed0023649
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S15a-5-like
Location	LG07: 734902 .. 737776 (-)
RNA-Seq Expression	Sed0023649
Synteny	Sed0023649

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGATTATCTCGTTTCCCTGTAGAAAAAGAAGAAACGAGTAAATATTTTATTTATTTATTTTTCCCTCTCTATAGTTAGCATTTATGAAAAGTAGCCCTAAAAGATGAAAATTAACCCTTAAAAAACTGTCCCCTAAAGTAGTGAGCTCTGAAATTTGGGTCTAACTTCCGGCCCTCACTCTCTCTCCCGCCGATCAGTAAGGTCTCCCTCGAGCTAGGGCTCCGCCGTCATTCGCCGCTTTCTCTTCTGCTTCGCCGGCGTTCAAGGCGGCCTCCGGTAAAATCACTATCAATTTCCATTTCTAAATTGATTTTCCCACGATTCTTGCGTTAGAATTTTCTCGGTAATCGTAGGAAAGCTTCACGATACACGAAATTTGATCTCAGGTTTTGTTAATTTTCGATATGGGGAGGAGGATATTGAACGATGCATTAAGAGCTATTGTCAACGCTGAGAAAAGGGGAAATTCTATGGTGGAACTGAAACCCATTTCCACTGTCATGTCTTCTTTCCTTAAAGTCATGAAATATCATGGTAATCATTACCATTCTCTAGCTCTCTGGATGGGGGACTGACTTGGATTTTACAGTATCATCAAGTCCTCTTTATTACTTGGGATTTCTGCTCCGGTCTTTACTTCCATGTCTGCAAGTGATACATGTAGAGTTTTGTTCCTAATCATTTGGTATCTTTTGTCTGTGTTGTTGATCTGTTTTCCCCCCTGGTTTTTGTTGCATTGGACTTTGGAATATGGTGATTGTATAGTCGGTGAATGAACATTTAAATGCAAAATGATTTCCATTTCTTGTTTTGATATTCAAAAGGAGGAAAAAATGCATTCCCTGTTTTTTTGTTTTTTTTTAGTTCAATAACAATTAGGGTGGGGGATCCGCTCATCACTTTTTGGTCTTGGGGGTTTCAAACCCATGTAGTCCTTGTTTGCCATTTGATTGTTGGTTTTTTTTGCAATTGATCTGTTATTTATTTATTTTTACCTTGAGGTTGATGTTATTCTTAATAATTTTGTATTAATGATCCTACCCCATTAGTTAGTCTCATCTATGGAGTCATCATGTTTTATTTGTAGGATATATCAAGGACTATCAAGTTTTCGATCCACAACGAGTTGGAAGGATAACAGTTGAGCTGCAAGGTAGGATCAAGGATTGCAAGGCTATCATGCACAGGCAGGACATCAAGGCTAAGGATATTGAAGCTTACAGATTGCGAACACTTCCAACTCATCAGGTGTTTTAACTAATATATTTTGCATTCCAATTTCAGTGGACTCACTATTCAATCTTTCACACTTATAGTGATATAGTTGCTAATATTTTCTTGGTTAAATTATCAACTTTCTTTCATTATAGGAAACGAAAACTTTCATTCATAAATGAATAATTACAAAAGAGGTCGGTCCTATCAATTATTACAAAAAACTTCTCCAATGCGTAAAAAGTATAGAAAAGCTATAATCCTTAAATAGTGTAATAGAGTGTGCCCAAGTCATAGCATGAAATAAATGTCGTCCAACAGAGAGTTCTTAGCCTGTTTATCATCTGCGAAAATATTTTCATTTCTAGCCTTTAAAATTGTACACCAAAATCCGTTGAGAAGTAAGCACCACAAAACCTTTTCTTCTTTAAATAGGTGCCCGAAGTAAGATTGGTAAATCAAATCTTGTATGTTGCCTGGTCTCACCATACACCAACTTAAACCTTAATTTTTAATGTTTACCGCTATTTTGTATATTTATTAGACTAATGTTAGCTAATTTGATACAACGTTGCAAACTGATGTTCTAAAACCAGTAGACAAAATCAAGCAAGATGTCTCTACAAAGAATTTGTTATTGGTGGCCATCTACTTAGTAACTAATTTTCTATGGGTTTTCATGACGACAACCAAATATTGTAGTTGTAGATCAGACGTTTTGTATCGTGAGAATAGTCAAGGTGTGCATAAATTAACCCAAACACTCTTGGATAAAAAAAAATTGATACATTATTTTAAAAGACAACATTTTGCATCTTTCACTTTATTATTTAGTTGTCCATTTTATTTGGTCATTTGTTTACTCATGTTGCATCAAATCAACCAACATTGGGTAAATATGCATGACATACTATTTAGTTAACATTGTTATTGACAAAGGCTACGTGGAATCATAATTCAAAGTTTAGAGATGCAAATGATTAATTCTTCTCTTCTTTTGAAATTCAAAGACTTGAATAAACACAACCATCATAATTCATGTCAACATTTTCTATTCAAGCTAAATAGATTCTCAACATTCTTATTCTATCTATAGATAGAACCTTGACCAAGTAGGCAGGTCTTGTTCATTGAACCAAAATGTTCACTCTCCCCTTTTTTGCAGCGTGCCGATGTTGTGAATTGTGATTAAGTTGCCTATTCCAACTGCATATACACTTGGCCAAGTAGTTCTTGTTTATACTAACCAAATATTTTCTTCTCGCTCCTGTCTCTACAGTGGGGTTATGTTGTGATTACTACTCCAGAAGGCATCCTGGATCATGAAGAGGCAATGAAAAGGAATGTCGGTGGTCAGGTTCTTGGATATTTTCATTAGAGAGCCTCCTTGTTTGCCTGTTCCTTGTGGATTTTTCAGATGTTTCCCATTTTGCATTGGGATCTTATGGCTTAGTTTTCTCATTTGTGGCATTTTGGTGTAGTTGTATGCTTTAGTCATATAAGGGAGGCACTTGTCCAGTTTTCAGTCTTATAATTATGCTCTCACCACTAGTAATGTAAGCATAATATGTCTGAAGTTCTGAACTTCCAGAAAAGGAAAAAAAACATCAATTAACATTGATATCATTTGTTGGCTTAAATTTATTTTCCTGATTGTG

mRNA sequence

ATCGATTATCTCGTTTCCCTGTAGAAAAAGAAGAAACGAGTAAATATTTTATTTATTTATTTTTCCCTCTCTATAGTTAGCATTTATGAAAAGTAGCCCTAAAAGATGAAAATTAACCCTTAAAAAACTGTCCCCTAAAGTAGTGAGCTCTGAAATTTGGGTCTAACTTCCGGCCCTCACTCTCTCTCCCGCCGATCAGTAAGGTCTCCCTCGAGCTAGGGCTCCGCCGTCATTCGCCGCTTTCTCTTCTGCTTCGCCGGCGTTCAAGGCGGCCTCCGGTTTTGTTAATTTTCGATATGGGGAGGAGGATATTGAACGATGCATTAAGAGCTATTGTCAACGCTGAGAAAAGGGGAAATTCTATGGTGGAACTGAAACCCATTTCCACTGTCATGTCTTCTTTCCTTAAAGTCATGAAATATCATGGATATATCAAGGACTATCAAGTTTTCGATCCACAACGAGTTGGAAGGATAACAGTTGAGCTGCAAGGTAGGATCAAGGATTGCAAGGCTATCATGCACAGGCAGGACATCAAGGCTAAGGATATTGAAGCTTACAGATTGCGAACACTTCCAACTCATCAGTGGGGTTATGTTGTGATTACTACTCCAGAAGGCATCCTGGATCATGAAGAGGCAATGAAAAGGAATGTCGGTGGTCAGGTTCTTGGATATTTTCATTAGAGAGCCTCCTTGTTTGCCTGTTCCTTGTGGATTTTTCAGATGTTTCCCATTTTGCATTGGGATCTTATGGCTTAGTTTTCTCATTTGTGGCATTTTGGTGTAGTTGTATGCTTTAGTCATATAAGGGAGGCACTTGTCCAGTTTTCAGTCTTATAATTATGCTCTCACCACTAGTAATGTAAGCATAATATGTCTGAAGTTCTGAACTTCCAGAAAAGGAAAAAAAACATCAATTAACATTGATATCATTTGTTGGCTTAAATTTATTTTCCTGATTGTG

Coding sequence (CDS)

ATGGGGAGGAGGATATTGAACGATGCATTAAGAGCTATTGTCAACGCTGAGAAAAGGGGAAATTCTATGGTGGAACTGAAACCCATTTCCACTGTCATGTCTTCTTTCCTTAAAGTCATGAAATATCATGGATATATCAAGGACTATCAAGTTTTCGATCCACAACGAGTTGGAAGGATAACAGTTGAGCTGCAAGGTAGGATCAAGGATTGCAAGGCTATCATGCACAGGCAGGACATCAAGGCTAAGGATATTGAAGCTTACAGATTGCGAACACTTCCAACTCATCAGTGGGGTTATGTTGTGATTACTACTCCAGAAGGCATCCTGGATCATGAAGAGGCAATGAAAAGGAATGTCGGTGGTCAGGTTCTTGGATATTTTCATTAG

Protein sequence

MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRITVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNVGGQVLGYFH

Homology

[Close]

BLAST of Sed0023649 vs. NCBI nr
Match: XP_022150338.1 (40S ribosomal protein S15a-5-like isoform X2 [Momordica charantia])

HSP 1 Score: 251.1 bits (640), Expect = 5.0e-63
Identity = 121/129 (93.80%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALR+IVNAE+RG SMVELKPISTVMSSFLKVMK HGYIKDYQV+DP RVGRI
Sbjct: 1   MGRRILNDALRSIVNAERRGKSMVELKPISTVMSSFLKVMKDHGYIKDYQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKAI HRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAM+RNV
Sbjct: 61  TVELQGRIKDCKAITHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMRRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of Sed0023649 vs. NCBI nr
Match: XP_038884441.1 (40S ribosomal protein S15a-5-like [Benincasa hispida])

HSP 1 Score: 250.8 bits (639), Expect = 6.6e-63
Identity = 122/129 (94.57%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALRAIVNAE+RG SMVELKPISTVMSSFLKVMK HGYIKD+QV DPQRVGRI
Sbjct: 1   MGRRILNDALRAIVNAERRGKSMVELKPISTVMSSFLKVMKDHGYIKDFQVHDPQRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKAI HRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVELQGRIKDCKAITHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Sed0023649 vs. NCBI nr
Match: XP_004140873.1 (40S ribosomal protein S15a-2 [Cucumis sativus] >KGN45986.1 hypothetical protein Csa_004829 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60
Identity = 118/129 (91.47%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALR+IVNAE+RGNSMVELKPISTVM+SFLKVMK HGYIKDYQV +PQRVGRI
Sbjct: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKAI +RQDIKAKDIEAY LRTLPT QWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Sed0023649 vs. NCBI nr
Match: XP_008445702.1 (PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis melo] >KAA0033107.1 40S ribosomal protein S15a-2-like [Cucumis melo var. makuwa] >TYK17126.1 40S ribosomal protein S15a-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 6.8e-60
Identity = 117/129 (90.70%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALRAIVNAE+RG SMVELKPISTVM+SFLKVMK HGYIKDYQV +PQRVGRI
Sbjct: 1   MGRRILNDALRAIVNAERRGKSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGRIKDCKA+ +RQDIKAKDIEAYRLRTLPT QWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVDLQGRIKDCKALTYRQDIKAKDIEAYRLRTLPTLQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Sed0023649 vs. NCBI nr
Match: NP_001237612.1 (40S ribosomal protein S15a-5-like [Glycine max] >XP_006584494.1 uncharacterized protein LOC100306361 isoform X1 [Glycine max] >XP_014633812.1 uncharacterized protein LOC100306361 isoform X1 [Glycine max] >XP_028242727.1 40S ribosomal protein S15a-5-like [Glycine soja] >XP_028242728.1 40S ribosomal protein S15a-5-like [Glycine soja] >XP_028242730.1 40S ribosomal protein S15a-5-like [Glycine soja] >XP_028242731.1 40S ribosomal protein S15a-5-like [Glycine soja] >XP_040873514.1 uncharacterized protein LOC100306361 isoform X1 [Glycine max] >ACU14495.1 unknown [Glycine max] >KAG4999139.1 hypothetical protein JHK87_020211 [Glycine soja] >KAG5014633.1 hypothetical protein JHK85_020769 [Glycine max] >KAG5024417.1 hypothetical protein JHK86_020331 [Glycine max] >KAG5135586.1 hypothetical protein JHK82_020317 [Glycine max])

HSP 1 Score: 237.7 bits (605), Expect = 5.8e-59
Identity = 108/129 (83.72%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALR++VNAE+RG SMVELKPISTVMSSFL++MK+HGYIKD+QV+DP RVGRI
Sbjct: 1   MGRRILNDALRSMVNAERRGKSMVELKPISTVMSSFLQIMKHHGYIKDFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           +VELQGRI DCKA+MHR+D+KA+DIEAYRL+TLPTHQWGYVVITTP+GILDHEEA+++NV
Sbjct: 61  SVELQGRINDCKALMHRKDLKARDIEAYRLQTLPTHQWGYVVITTPDGILDHEEAIRKNV 120

Query: 121 GGQVLGYFH 130
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of Sed0023649 vs. ExPASy Swiss-Prot
Match: Q9M0E0 (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana OX=3702 GN=RPS15AE PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 9.0e-55
Identity = 99/129 (76.74%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALR IVNAE+RG + VELKPISTVMSSFL++MK  GYIK++QV+DP RVGRI
Sbjct: 1   MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+ +RQD++AK+IE Y  RTLPT QWGYVVITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLG+F+
Sbjct: 121 GGQVLGFFY 129

[Close]

BLAST of Sed0023649 vs. ExPASy Swiss-Prot
Match: O82205 (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.0e-54
Identity = 99/129 (76.74%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALR IVNAEKRG + VELKP+STVMSSFLK+MK  GYIK++QV DP RVGRI
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+ +RQD+KA +I  Y  RTLPT QWGY+VITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Sed0023649 vs. ExPASy Swiss-Prot
Match: Q9AT34 (40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-32
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 5   ILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRITVEL 64
           +LNDAL+++ NAEKRG   V ++P S V+  FL VM+ HGYI +++  D  R G+I VEL
Sbjct: 6   VLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I  R D+  K+IE +  R LP+ Q+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 130
           LG+F+
Sbjct: 126 LGFFY 130

[Close]

BLAST of Sed0023649 vs. ExPASy Swiss-Prot
Match: P42798 (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 3.7e-32
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 5   ILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRITVEL 64
           +LNDAL+++ NAEKRG   V ++P S V+  FL VM+ HGYI +++  D  R G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I  R D+  K+IE +  R LP+ Q+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 130
           LG+F+
Sbjct: 126 LGFFY 130

[Close]

BLAST of Sed0023649 vs. ExPASy Swiss-Prot
Match: Q00332 (40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 3.7e-32
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 5   ILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRITVEL 64
           +LNDAL+++ NAEKRG   V ++P S V+  FL VM+ HGYI +++  D  R G+I VEL
Sbjct: 6   VLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I  R D+  K+IE +  R LP+ Q+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 130
           LG+F+
Sbjct: 126 LGFFY 130

[Close]

BLAST of Sed0023649 vs. ExPASy TrEMBL
Match: A0A6J1D967 (40S ribosomal protein S15a-5-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018536 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63
Identity = 121/129 (93.80%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALR+IVNAE+RG SMVELKPISTVMSSFLKVMK HGYIKDYQV+DP RVGRI
Sbjct: 1   MGRRILNDALRSIVNAERRGKSMVELKPISTVMSSFLKVMKDHGYIKDYQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKAI HRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAM+RNV
Sbjct: 61  TVELQGRIKDCKAITHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMRRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of Sed0023649 vs. ExPASy TrEMBL
Match: A0A0A0KDZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G041710 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.7e-61
Identity = 118/129 (91.47%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALR+IVNAE+RGNSMVELKPISTVM+SFLKVMK HGYIKDYQV +PQRVGRI
Sbjct: 1   MGRRILNDALRSIVNAERRGNSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKAI +RQDIKAKDIEAY LRTLPT QWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVELQGRIKDCKAITYRQDIKAKDIEAYSLRTLPTRQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Sed0023649 vs. ExPASy TrEMBL
Match: A0A5D3D2U5 (40S ribosomal protein S15a-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00640 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.3e-60
Identity = 117/129 (90.70%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALRAIVNAE+RG SMVELKPISTVM+SFLKVMK HGYIKDYQV +PQRVGRI
Sbjct: 1   MGRRILNDALRAIVNAERRGKSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGRIKDCKA+ +RQDIKAKDIEAYRLRTLPT QWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVDLQGRIKDCKALTYRQDIKAKDIEAYRLRTLPTLQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Sed0023649 vs. ExPASy TrEMBL
Match: A0A1S3BDC0 (40S ribosomal protein S15a-2-like OS=Cucumis melo OX=3656 GN=LOC103488655 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.3e-60
Identity = 117/129 (90.70%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALRAIVNAE+RG SMVELKPISTVM+SFLKVMK HGYIKDYQV +PQRVGRI
Sbjct: 1   MGRRILNDALRAIVNAERRGKSMVELKPISTVMASFLKVMKDHGYIKDYQVHNPQRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGRIKDCKA+ +RQDIKAKDIEAYRLRTLPT QWGYVVITTPEGILDHEEAMKRNV
Sbjct: 61  TVDLQGRIKDCKALTYRQDIKAKDIEAYRLRTLPTLQWGYVVITTPEGILDHEEAMKRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Sed0023649 vs. ExPASy TrEMBL
Match: A0A6J1KS88 (40S ribosomal protein S15a-5-like OS=Cucurbita maxima OX=3661 GN=LOC111498187 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.8e-59
Identity = 113/129 (87.60%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALRAIVNAE+RG + VELKPISTVMSSFLKVMK HGYI D+QV DPQRVGRI
Sbjct: 1   MGRRILNDALRAIVNAERRGKATVELKPISTVMSSFLKVMKDHGYINDFQVHDPQRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TVELQGRIKDCKA+ HRQDIKAK++EAYR+RTLPT QWGYVVITTPEGI+DHEEA+KRNV
Sbjct: 61  TVELQGRIKDCKALTHRQDIKAKELEAYRIRTLPTRQWGYVVITTPEGIMDHEEAIKRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129

[Close]

BLAST of Sed0023649 vs. TAIR 10
Match: AT4G29430.1 (ribosomal protein S15A E )

HSP 1 Score: 214.2 bits (544), Expect = 6.4e-56
Identity = 99/129 (76.74%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALR IVNAE+RG + VELKPISTVMSSFL++MK  GYIK++QV+DP RVGRI
Sbjct: 1   MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+ +RQD++AK+IE Y  RTLPT QWGYVVITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLG+F+
Sbjct: 121 GGQVLGFFY 129

[Close]

BLAST of Sed0023649 vs. TAIR 10
Match: AT2G19720.1 (ribosomal protein S15A B )

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-55
Identity = 99/129 (76.74%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 1   MGRRILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRI 60
           MGRRILNDALR IVNAEKRG + VELKP+STVMSSFLK+MK  GYIK++QV DP RVGRI
Sbjct: 1   MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRI 60

Query: 61  TVELQGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNV 120
           TV+LQGR+ DCKA+ +RQD+KA +I  Y  RTLPT QWGY+VITTP+GILDHEEA+KRNV
Sbjct: 61  TVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNV 120

Query: 121 GGQVLGYFH 130
           GGQVLG+FH
Sbjct: 121 GGQVLGFFH 129

[Close]

BLAST of Sed0023649 vs. TAIR 10
Match: AT1G07770.1 (ribosomal protein S15A )

HSP 1 Score: 139.0 bits (349), Expect = 2.6e-33
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 5   ILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRITVEL 64
           +LNDAL+++ NAEKRG   V ++P S V+  FL VM+ HGYI +++  D  R G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I  R D+  K+IE +  R LP+ Q+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 130
           LG+F+
Sbjct: 126 LGFFY 130

[Close]

BLAST of Sed0023649 vs. TAIR 10
Match: AT1G07770.2 (ribosomal protein S15A )

HSP 1 Score: 139.0 bits (349), Expect = 2.6e-33
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 5   ILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRITVEL 64
           +LNDAL+++ NAEKRG   V ++P S V+  FL VM+ HGYI +++  D  R G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I  R D+  K+IE +  R LP+ Q+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 130
           LG+F+
Sbjct: 126 LGFFY 130

[Close]

BLAST of Sed0023649 vs. TAIR 10
Match: AT5G59850.1 (Ribosomal protein S8 family protein )

HSP 1 Score: 139.0 bits (349), Expect = 2.6e-33
Identity = 63/125 (50.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 5   ILNDALRAIVNAEKRGNSMVELKPISTVMSSFLKVMKYHGYIKDYQVFDPQRVGRITVEL 64
           +LNDAL+++ NAEKRG   V ++P S V+  FL VM+ HGYI +++  D  R G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRIKDCKAIMHRQDIKAKDIEAYRLRTLPTHQWGYVVITTPEGILDHEEAMKRNVGGQV 124
            GR+  C  I  R D+  K+IE +  R LP+ Q+GY+V+TT  GI+DHEEA ++NVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 130
           LG+F+
Sbjct: 126 LGFFY 130

The following BLAST results are available for this feature:

BLAST of Sed0023649 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150338.1	5.0e-63	93.80	40S ribosomal protein S15a-5-like isoform X2 [Momordica charantia]	[more]
XP_038884441.1	6.6e-63	94.57	40S ribosomal protein S15a-5-like [Benincasa hispida]	[more]
XP_004140873.1	1.8e-60	91.47	40S ribosomal protein S15a-2 [Cucumis sativus] >KGN45986.1 hypothetical protein ...	[more]
XP_008445702.1	6.8e-60	90.70	PREDICTED: 40S ribosomal protein S15a-2-like [Cucumis melo] >KAA0033107.1 40S ri...	[more]
NP_001237612.1	5.8e-59	83.72	40S ribosomal protein S15a-5-like [Glycine max] >XP_006584494.1 uncharacterized ...	[more]

BLAST of Sed0023649 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E0	9.0e-55	76.74	40S ribosomal protein S15a-5 OS=Arabidopsis thaliana OX=3702 GN=RPS15AE PE=1 SV=...	[more]
O82205	2.0e-54	76.74	40S ribosomal protein S15a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS15AB PE=2 SV=...	[more]
Q9AT34	2.8e-32	50.40	40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3	[more]
P42798	3.7e-32	50.40	40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=...	[more]
Q00332	3.7e-32	50.40	40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3	[more]

BLAST of Sed0023649 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D967	2.4e-63	93.80	40S ribosomal protein S15a-5-like isoform X2 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A0A0KDZ7	8.7e-61	91.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G041710 PE=3 SV=1	[more]
A0A5D3D2U5	3.3e-60	90.70	40S ribosomal protein S15a-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BDC0	3.3e-60	90.70	40S ribosomal protein S15a-2-like OS=Cucumis melo OX=3656 GN=LOC103488655 PE=3 S...	[more]
A0A6J1KS88	2.8e-59	87.60	40S ribosomal protein S15a-5-like OS=Cucurbita maxima OX=3661 GN=LOC111498187 PE...	[more]

BLAST of Sed0023649 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29430.1	6.4e-56	76.74	ribosomal protein S15A E	[more]
AT2G19720.1	1.4e-55	76.74	ribosomal protein S15A B	[more]
AT1G07770.1	2.6e-33	50.40	ribosomal protein S15A	[more]
AT1G07770.2	2.6e-33	50.40	ribosomal protein S15A	[more]
AT5G59850.1	2.6e-33	50.40	Ribosomal protein S8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 6..127 e-value: 5.0E-21 score: 74.9
IPR000630	Ribosomal protein S8	PANTHER	PTHR11758	40S RIBOSOMAL PROTEIN S15A	coord: 1..129
None	No IPR available	GENE3D	3.30.1490.10		coord: 69..129 e-value: 7.2E-25 score: 88.5
None	No IPR available	GENE3D	3.30.1370.30		coord: 2..68 e-value: 4.2E-30 score: 105.4
None	No IPR available	PANTHER	PTHR11758:SF28	40S RIBOSOMAL PROTEIN S15A-2	coord: 1..129
IPR035987	Ribosomal protein S8 superfamily	SUPERFAMILY	56047	Ribosomal protein S8	coord: 3..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023649.1	Sed0023649.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome