Sed0023642 (gene) Chayote v1

Overview
NameSed0023642
Typegene
OrganismSechium edule (Chayote v1)
Descriptionhydroxyproline-rich glycoprotein family protein
LocationLG05: 29027435 .. 29028467 (-)
RNA-Seq ExpressionSed0023642
SyntenySed0023642
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGAAATGTAGAGAAGTTTGGTGAGAGAAAAGAAAAATGGAGTACGCAGAAGGCGAAGCACAGGATCCGGCCTCCCTGAGCTTCCCAGTTGGTTTGGTTCTTTTGTTGACATTTTTGTTTTGTATGTGTTGCTTTTTTTCTTGTTGCCTTCACTGGGAAAAGCTCCGATATCTGCTCGGCTGCTCCGATCATCCCGCCCACCGCAATTCTCCGCCGGTAACCGCCGCCTTCTCGCCGCCCCACAAAACTTTGCCACTCCATACGGTGTGTTTTCTTTTGTTATTTTTTATTAGAGATTTGTTTCAATCATGTGTCAAACTCGTTGTTTTATACATAAATCTCTTATATGTGTTAATTTTGTTGCCTCAACTTTTTCTTTTTGGCTATAATTTGATCTTTAAATTATTTCATAACAACATCGTGGTTTAAATTGCTCAAATTACAATTACCGATAATTTTTTTTTATATTATTGTCCAAATATTCATTATAAATTTTGAAATTTAACATTTAGGGGAGAATTTCGAATTCTAAGCGTTTTTTTTTTTCAATTTCTCAAGTTAAATGATCGATGTGAACAACGTAAACTAAATAACTTTTTTTCTTGCACTGCCTTTTTTCTTTTTTATTTATATGTTGTAAGGTGGTTTTTTATTTATTTATTTATTTATTATTATTTTTTTTAATAAGAAGATATGGAAGGAAAATCGGCCACAAAGTCTGTCAGTTTTGATGCCCGGCGACGAAGTTCCGAGGTTTATAGCAACCGCATGTCCACCGTGTGCGGCGGCGACGACGGCGGCGTTGGTGGAAGTTGTAATACAAAAACAGAGTATTCCGGACTCCTCTGGAGTTTTGTGATCTTTTCAATTAATCCCGTTTTTATGCGTAAATATATATATCTTTTTTTCTATTTATATTCAACTTAATTTTAATTCCATTTTTTTCTTTGGGATTTTCTAGCAATGTTCATGTTTTTGTCTCTATTTTGTCAGTTTAATTTTATTCTCTATAGATGACAAACAACAAGATTCC

mRNA sequence

ACGAAATGTAGAGAAGTTTGGTGAGAGAAAAGAAAAATGGAGTACGCAGAAGGCGAAGCACAGGATCCGGCCTCCCTGAGCTTCCCAGTTGGTTTGGTTCTTTTGTTGACATTTTTGTTTTGTATGTGTTGCTTTTTTTCTTGTTGCCTTCACTGGGAAAAGCTCCGATATCTGCTCGGCTGCTCCGATCATCCCGCCCACCGCAATTCTCCGCCGGTAACCGCCGCCTTCTCGCCGCCCCACAAAACTTTGCCACTCCATACGATATGGAAGGAAAATCGGCCACAAAGTCTGTCAGTTTTGATGCCCGGCGACGAAGTTCCGAGGTTTATAGCAACCGCATGTCCACCGTGTGCGGCGGCGACGACGGCGGCGTTGGTGGAAGTTGTAATACAAAAACAGAGTATTCCGGACTCCTCTGGAGTTTTGTGATCTTTTCAATTAATCCCGTTTTTATGCGTAAATATATATATCTTTTTTTCTATTTATATTCAACTTAATTTTAATTCCATTTTTTTCTTTGGGATTTTCTAGCAATGTTCATGTTTTTGTCTCTATTTTGTCAGTTTAATTTTATTCTCTATAGATGACAAACAACAAGATTCC

Coding sequence (CDS)

ATGGAGTACGCAGAAGGCGAAGCACAGGATCCGGCCTCCCTGAGCTTCCCAGTTGGTTTGGTTCTTTTGTTGACATTTTTGTTTTGTATGTGTTGCTTTTTTTCTTGTTGCCTTCACTGGGAAAAGCTCCGATATCTGCTCGGCTGCTCCGATCATCCCGCCCACCGCAATTCTCCGCCGGTAACCGCCGCCTTCTCGCCGCCCCACAAAACTTTGCCACTCCATACGATATGGAAGGAAAATCGGCCACAAAGTCTGTCAGTTTTGATGCCCGGCGACGAAGTTCCGAGGTTTATAGCAACCGCATGTCCACCGTGTGCGGCGGCGACGACGGCGGCGTTGGTGGAAGTTGTAATACAAAAACAGAGTATTCCGGACTCCTCTGGAGTTTTGTGA

Protein sequence

MEYAEGEAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNSPPVTAAFSPPHKTLPLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALVEVVIQKQSIPDSSGVL
Homology
BLAST of Sed0023642 vs. NCBI nr
Match: XP_038899315.1 (uncharacterized protein At5g65660-like [Benincasa hispida])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 104/133 (78.20%), Postives = 109/133 (81.95%), Query Frame = 0

Query: 1   MEYAEGEAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNS-- 60
           MEY   EAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLR  LGC DH  H +   
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 61  PPVTAAFSPPHKTLPLHT-IWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALVEV 120
           PP TAAFSPP K  P+HT IW+ENRPQSLSVLMPGDEVPRFIA ACPPCAA   AALVE+
Sbjct: 61  PPQTAAFSPPDKISPIHTKIWRENRPQSLSVLMPGDEVPRFIAMACPPCAA---AALVEI 120

Query: 121 VIQK--QSIPDSS 129
           V+QK  QS PDSS
Sbjct: 121 VVQKPSQSFPDSS 130

BLAST of Sed0023642 vs. NCBI nr
Match: XP_008466113.1 (PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo] >KAA0038642.1 uncharacterized protein E6C27_scaffold92G001760 [Cucumis melo var. makuwa] >TYK31243.1 uncharacterized protein E5676_scaffold455G005320 [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 5.7e-46
Identity = 101/135 (74.81%), Postives = 107/135 (79.26%), Query Frame = 0

Query: 1   MEYAEGEAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNSPP 60
           MEY   EAQDPASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLR  LGC DH  H + PP
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDH-LHHHHPP 60

Query: 61  V-----TAAFSPPHKTLPLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALV 120
           +      AA SPP K  P+HTIWKENRPQS+SVLMPGDEVPRFIA ACPPCA A  AALV
Sbjct: 61  IPPPHSPAALSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATA-AAALV 120

Query: 121 EVVIQK--QSIPDSS 129
           E+V+QK  QSI DSS
Sbjct: 121 EIVVQKPSQSISDSS 133

BLAST of Sed0023642 vs. NCBI nr
Match: KAG6591711.1 (hypothetical protein SDJN03_14057, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024594.1 hypothetical protein SDJN02_13412 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.1 bits (492), Expect = 7.4e-46
Identity = 96/125 (76.80%), Postives = 103/125 (82.40%), Query Frame = 0

Query: 1   MEYAEGEAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNS-- 60
           MEY + EAQD ASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLR +LGC DH  HR+   
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 61  PPVTAAFSPPHKTLPLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALVEVV 120
           PP T AFSPP K  P+HTIWKENRP+SL+VLMPGDEVPRFIA ACPPC A   A LVE+V
Sbjct: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGA---APLVEIV 120

Query: 121 IQKQS 124
           IQK S
Sbjct: 121 IQKPS 122

BLAST of Sed0023642 vs. NCBI nr
Match: XP_022936981.1 (uncharacterized protein At5g65660-like [Cucurbita moschata])

HSP 1 Score: 194.1 bits (492), Expect = 7.4e-46
Identity = 96/125 (76.80%), Postives = 103/125 (82.40%), Query Frame = 0

Query: 1   MEYAEGEAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNS-- 60
           MEY + EAQD ASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLR +LGC DH  HR+   
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 61  PPVTAAFSPPHKTLPLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALVEVV 120
           PP T AFSPP K  P+HTIWKENRP+SL+VLMPGDEVPRFIA ACPPC A   A LVE+V
Sbjct: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGA---APLVEIV 120

Query: 121 IQKQS 124
           IQK S
Sbjct: 121 IQKPS 122

BLAST of Sed0023642 vs. NCBI nr
Match: XP_023536259.1 (uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.0 bits (489), Expect = 1.7e-45
Identity = 96/125 (76.80%), Postives = 102/125 (81.60%), Query Frame = 0

Query: 1   MEYAEGEAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNS-- 60
           MEY + EAQD ASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLR +LGC DH  HR+   
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 61  PPVTAAFSPPHKTLPLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALVEVV 120
           PP T AFSPP K  P+HTIWKENRP SL+VLMPGDEVPRFIA ACPPC A   A LVE+V
Sbjct: 61  PPETPAFSPPDKFSPIHTIWKENRPASLTVLMPGDEVPRFIAMACPPCVA---APLVEIV 120

Query: 121 IQKQS 124
           IQK S
Sbjct: 121 IQKPS 122

BLAST of Sed0023642 vs. ExPASy Swiss-Prot
Match: Q9LSK9 (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-10
Identity = 43/113 (38.05%), Postives = 54/113 (47.79%), Query Frame = 0

Query: 13  SLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNSPPVTAAFSPPHKTL 72
           SL FP+G  LLL  +F +   FSCC HW+K R L       +  N  P     S P+K  
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSL-----RRSLANGRPSADIESNPYKPK 77

Query: 73  PLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALVEVVIQKQSIP 126
           P     K+ +  S+ VLMPGD  P+FIA  CP          V+V    QS P
Sbjct: 78  PPFPEMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQSPP 125

BLAST of Sed0023642 vs. ExPASy TrEMBL
Match: A0A5D3E545 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005320 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.8e-46
Identity = 101/135 (74.81%), Postives = 107/135 (79.26%), Query Frame = 0

Query: 1   MEYAEGEAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNSPP 60
           MEY   EAQDPASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLR  LGC DH  H + PP
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDH-LHHHHPP 60

Query: 61  V-----TAAFSPPHKTLPLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALV 120
           +      AA SPP K  P+HTIWKENRPQS+SVLMPGDEVPRFIA ACPPCA A  AALV
Sbjct: 61  IPPPHSPAALSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATA-AAALV 120

Query: 121 EVVIQK--QSIPDSS 129
           E+V+QK  QSI DSS
Sbjct: 121 EIVVQKPSQSISDSS 133

BLAST of Sed0023642 vs. ExPASy TrEMBL
Match: A0A1S3CQS4 (uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.8e-46
Identity = 101/135 (74.81%), Postives = 107/135 (79.26%), Query Frame = 0

Query: 1   MEYAEGEAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNSPP 60
           MEY   EAQDPASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLR  LGC DH  H + PP
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDH-LHHHHPP 60

Query: 61  V-----TAAFSPPHKTLPLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALV 120
           +      AA SPP K  P+HTIWKENRPQS+SVLMPGDEVPRFIA ACPPCA A  AALV
Sbjct: 61  IPPPHSPAALSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATA-AAALV 120

Query: 121 EVVIQK--QSIPDSS 129
           E+V+QK  QSI DSS
Sbjct: 121 EIVVQKPSQSISDSS 133

BLAST of Sed0023642 vs. ExPASy TrEMBL
Match: A0A6J1F906 (uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC111443410 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.6e-46
Identity = 96/125 (76.80%), Postives = 103/125 (82.40%), Query Frame = 0

Query: 1   MEYAEGEAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNS-- 60
           MEY + EAQD ASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLR +LGC DH  HR+   
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 61  PPVTAAFSPPHKTLPLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALVEVV 120
           PP T AFSPP K  P+HTIWKENRP+SL+VLMPGDEVPRFIA ACPPC A   A LVE+V
Sbjct: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGA---APLVEIV 120

Query: 121 IQKQS 124
           IQK S
Sbjct: 121 IQKPS 122

BLAST of Sed0023642 vs. ExPASy TrEMBL
Match: A0A6J1IEI5 (uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC111476516 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.3e-45
Identity = 95/125 (76.00%), Postives = 102/125 (81.60%), Query Frame = 0

Query: 1   MEYAEGEAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHP--AHRNS 60
           MEY + EAQD ASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLR +LGC DH    H + 
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHSDHLHPSI 60

Query: 61  PPVTAAFSPPHKTLPLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALVEVV 120
           PP T AFSPP K  P+HTIWKENRP+SL+VLMPGDEVPRFIA ACPPC A   A LVE+V
Sbjct: 61  PPETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGA---APLVEIV 120

Query: 121 IQKQS 124
           IQK S
Sbjct: 121 IQKPS 122

BLAST of Sed0023642 vs. ExPASy TrEMBL
Match: A0A6J1CGJ4 (uncharacterized protein At5g65660-like OS=Momordica charantia OX=3673 GN=LOC111011330 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.8e-41
Identity = 93/134 (69.40%), Postives = 101/134 (75.37%), Query Frame = 0

Query: 1   MEYAEGEAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNSPP 60
           M+Y + EAQDPASLSFPVGLVLLLTF FCMCCFFSCCLHW+KLR  LGC DH      PP
Sbjct: 1   MDYDDREAQDPASLSFPVGLVLLLTFFFCMCCFFSCCLHWDKLRSFLGCPDHRHPPPIPP 60

Query: 61  VTAAFSPPHKTLPLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAA-LVEVVI 120
             AA SPP K LPLHT    N+ QSL V+MPGDE PRFIA ACPPCAAA  AA  V+V++
Sbjct: 61  ENAASSPPDKILPLHT----NQSQSLPVVMPGDEFPRFIAMACPPCAAAVAAAPFVDVLV 120

Query: 121 QK--QSIPDSSGVL 132
           QK  QS PDSSG L
Sbjct: 121 QKPPQSTPDSSGAL 130

BLAST of Sed0023642 vs. TAIR 10
Match: AT5G65660.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-11
Identity = 43/113 (38.05%), Postives = 54/113 (47.79%), Query Frame = 0

Query: 13  SLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRYLLGCSDHPAHRNSPPVTAAFSPPHKTL 72
           SL FP+G  LLL  +F +   FSCC HW+K R L       +  N  P     S P+K  
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSL-----RRSLANGRPSADIESNPYKPK 77

Query: 73  PLHTIWKENRPQSLSVLMPGDEVPRFIATACPPCAAATTAALVEVVIQKQSIP 126
           P     K+ +  S+ VLMPGD  P+FIA  CP          V+V    QS P
Sbjct: 78  PPFPEMKKPQNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQSPP 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038899315.11.4e-4778.20uncharacterized protein At5g65660-like [Benincasa hispida][more]
XP_008466113.15.7e-4674.81PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo] >KAA0038642.1 u... [more]
KAG6591711.17.4e-4676.80hypothetical protein SDJN03_14057, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022936981.17.4e-4676.80uncharacterized protein At5g65660-like [Cucurbita moschata][more]
XP_023536259.11.7e-4576.80uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q9LSK95.2e-1038.05Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 P... [more]
Match NameE-valueIdentityDescription
A0A5D3E5452.8e-4674.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CQS42.8e-4674.81uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 P... [more]
A0A6J1F9063.6e-4676.80uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A6J1IEI52.3e-4576.00uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC1114765... [more]
A0A6J1CGJ47.8e-4169.40uncharacterized protein At5g65660-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
Match NameE-valueIdentityDescription
AT5G65660.13.7e-1138.05hydroxyproline-rich glycoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34291:SF7PROTEIN, PUTATIVE-RELATEDcoord: 7..123
IPR037699Uncharacterized protein At5g65660-likePANTHERPTHR34291HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEINcoord: 7..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023642.1Sed0023642.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane