Sed0023638 (gene) Chayote v1

Overview


Name	Sed0023638
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type E3 ubiquitin transferase
Location	LG05: 1911640 .. 1913568 (+)
RNA-Seq Expression	Sed0023638
Synteny	Sed0023638

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGAAATGACTGAGAGCATTAACTTAGCCAAAACCTTAACATTAACAAATTTAAGTGCTTTTCTATGTCTACTATTTATGAATCAATTCCTCACTGAAACTTAGCTTCAACTACACCAAAAAGCATTGATTACTTCAATAAATTCCCCCACCAGCTTCATCATCTTTGTCAACAAAACTGTTTTAACAAAAAAAAAATAGATAAAGATCATCATTATTACATCCTTTTTTAGTCCCATATTTCTTCCTTCAAACATTTTTCATTGCAGGGTCTCTTGGTTGGTGTTTGTTAACTGCACAAATTTGGTCTTCTGGTTATCTGTTTTTGTGGGGTTTTCAATTGGGTGCAATCTTCAGGTACTGTTCTGTTTTTTGTTTCTGCCCATGAACTGTTTGATTAAATGCCTCACCCAACAATTTGTGGCTTCCATGGATGTGTGCTTGATCCATGTGTTGTATTATTGTTTAATTTGATAAATATTTGCATATTTCTTTGGGTTTTTTCATAAATCTTGCATTTGAAGAGACTTTTAGTGATGGGGTCTTATGGAAGCCCTAAGACTTGGATACCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGCAGTGTGTATTGTCCTCAATGGTGCTACATCATGTTTTCACCTCCACAACCTTTAGAGTTCACAGATGATGATTCAGGCCTTAATTTTTCACCTCTTGTGATTGCTATTATTGGAATTCTGGCTAGTGCTGTTCTTCTTTTAAGCTATTACACCTTCATTTCAAAGTATTGTGGCAACACCAATCGTTTGTCTAGGACTAGAGTTCATGACCCAAATGAGGAATTTGAAGATAATCACATCCCAACTCTTCATGAGCCATGGCATGTTGCTACTACTGGCTTGGATGAAGCACTGATCAAGTCCATTACTGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCACTGAGTTTCAAGAAGATGAGAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTCCATCTTCTATGCATTGATACTTGGCTTAAATCACACTCTAATTGCCCGTTGTGCCGTGCAAATATCGTCTCTGTCACCGCTTCTTCTCCGGTTCAACTGCCTGCAACAAGCACTGTTAATCCCATAACTAGTGAGGTCATGCCAGTGACGTCTCGGGAAAATGACCATGAGGATGTTTCACAAGAATCTGGAAGAAGTTTCGGCAATGAGGATGCGAAGAACTCTGTTCGCGCTTTCAGTGATCTCGGAAATCTGGACAAGAGAGATACTGTCATTGAGCTTAGAGATGGAATATTGCAGCAAATTAGAAGGTCTATTTCAATGGATCATTGCAGCCAAAGCCATATCATTATCGCTGATGTCTTACGTTTTAACGGAGATGAGTTCGGAGCTATCGATATAGCAGGAAGTTCAGGAGGTGTGGGATCATCCAAACATTCAATGAGAGAAGATATCAAGTCAAGTCATAGAAAAAGAATTTTACATTATGTAATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTTCTCACAAGGCATGAAAGAGAACACATAGGAATTGCCCCTGTCTAAAACTTACAACAAAGAGAAAATCACCAACAAGAGCAAAAATTCAACGGGACATGACCAAGAGAAACAAAATTACAACAGAGAGAGAGAATCAGAAAGATTTATAGTTTTGATGAGAAAACCACAACAGATTCATGAAATGAACATATACAATTGTGCTTTGTTGAGCCAATTTCAATCATTTCCTTTTATGGTTGGTTATTGTTGTAAAGAACATCCATGATTTTTGCTTTATCATTCAACTGTCACAATTATATATGAACATATACCATTGTGCTTTGTTTAGCTGCTTTCAATCATTTCCTTTTATGGT

mRNA sequence

GCAGAAATGACTGAGAGCATTAACTTAGCCAAAACCTTAACATTAACAAATTTAAGTGCTTTTCTATGTCTACTATTTATGAATCAATTCCTCACTGAAACTTAGCTTCAACTACACCAAAAAGCATTGATTACTTCAATAAATTCCCCCACCAGCTTCATCATCTTTGTCAACAAAACTGTTTTAACAAAAAAAAAATAGATAAAGATCATCATTATTACATCCTTTTTTAGTCCCATATTTCTTCCTTCAAACATTTTTCATTGCAGGGTCTCTTGGTTGGTGTTTGTTAACTGCACAAATTTGGTCTTCTGGTTATCTGTTTTTGTGGGGTTTTCAATTGGGTGCAATCTTCAGGTACTGTTCTGTTTTTTGTTTCTGCCCATGAACTGTTTGATTAAATGCCTCACCCAACAATTTGTGGCTTCCATGGATGTGTGCTTGATCCATGTGTTGTATTATTGTTTAATTTGATAAATATTTGCATATTTCTTTGGGTTTTTTCATAAATCTTGCATTTGAAGAGACTTTTAGTGATGGGGTCTTATGGAAGCCCTAAGACTTGGATACCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGCAGTGTGTATTGTCCTCAATGGTGCTACATCATGTTTTCACCTCCACAACCTTTAGAGTTCACAGATGATGATTCAGGCCTTAATTTTTCACCTCTTGTGATTGCTATTATTGGAATTCTGGCTAGTGCTGTTCTTCTTTTAAGCTATTACACCTTCATTTCAAAGTATTGTGGCAACACCAATCGTTTGTCTAGGACTAGAGTTCATGACCCAAATGAGGAATTTGAAGATAATCACATCCCAACTCTTCATGAGCCATGGCATGTTGCTACTACTGGCTTGGATGAAGCACTGATCAAGTCCATTACTGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCACTGAGTTTCAAGAAGATGAGAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTCCATCTTCTATGCATTGATACTTGGCTTAAATCACACTCTAATTGCCCGTTGTGCCGTGCAAATATCGTCTCTGTCACCGCTTCTTCTCCGGTTCAACTGCCTGCAACAAGCACTGTTAATCCCATAACTAGTGAGGTCATGCCAGTGACGTCTCGGGAAAATGACCATGAGGATGTTTCACAAGAATCTGGAAGAAGTTTCGGCAATGAGGATGCGAAGAACTCTGTTCGCGCTTTCAGTGATCTCGGAAATCTGGACAAGAGAGATACTGTCATTGAGCTTAGAGATGGAATATTGCAGCAAATTAGAAGGTCTATTTCAATGGATCATTGCAGCCAAAGCCATATCATTATCGCTGATGTCTTACGTTTTAACGGAGATGAGTTCGGAGCTATCGATATAGCAGGAAGTTCAGGAGGTGTGGGATCATCCAAACATTCAATGAGAGAAGATATCAAGTCAAGTCATAGAAAAAGAATTTTACATTATGTAATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTTCTCACAAGGCATGAAAGAGAACACATAGGAATTGCCCCTGTCTAAAACTTACAACAAAGAGAAAATCACCAACAAGAGCAAAAATTCAACGGGACATGACCAAGAGAAACAAAATTACAACAGAGAGAGAGAATCAGAAAGATTTATAGTTTTGATGAGAAAACCACAACAGATTCATGAAATGAACATATACAATTGTGCTTTGTTGAGCCAATTTCAATCATTTCCTTTTATGGTTGGTTATTGTTGTAAAGAACATCCATGATTTTTGCTTTATCATTCAACTGTCACAATTATATATGAACATATACCATTGTGCTTTGTTTAGCTGCTTTCAATCATTTCCTTTTATGGT

Coding sequence (CDS)

ATGGGGTCTTATGGAAGCCCTAAGACTTGGATACCATATATGAGCAACAAAGATTGCTCTCAAGGTTTCTGCAGTGTGTATTGTCCTCAATGGTGCTACATCATGTTTTCACCTCCACAACCTTTAGAGTTCACAGATGATGATTCAGGCCTTAATTTTTCACCTCTTGTGATTGCTATTATTGGAATTCTGGCTAGTGCTGTTCTTCTTTTAAGCTATTACACCTTCATTTCAAAGTATTGTGGCAACACCAATCGTTTGTCTAGGACTAGAGTTCATGACCCAAATGAGGAATTTGAAGATAATCACATCCCAACTCTTCATGAGCCATGGCATGTTGCTACTACTGGCTTGGATGAAGCACTGATCAAGTCCATTACTGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCACTGAGTTTCAAGAAGATGAGAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTCCATCTTCTATGCATTGATACTTGGCTTAAATCACACTCTAATTGCCCGTTGTGCCGTGCAAATATCGTCTCTGTCACCGCTTCTTCTCCGGTTCAACTGCCTGCAACAAGCACTGTTAATCCCATAACTAGTGAGGTCATGCCAGTGACGTCTCGGGAAAATGACCATGAGGATGTTTCACAAGAATCTGGAAGAAGTTTCGGCAATGAGGATGCGAAGAACTCTGTTCGCGCTTTCAGTGATCTCGGAAATCTGGACAAGAGAGATACTGTCATTGAGCTTAGAGATGGAATATTGCAGCAAATTAGAAGGTCTATTTCAATGGATCATTGCAGCCAAAGCCATATCATTATCGCTGATGTCTTACGTTTTAACGGAGATGAGTTCGGAGCTATCGATATAGCAGGAAGTTCAGGAGGTGTGGGATCATCCAAACATTCAATGAGAGAAGATATCAAGTCAAGTCATAGAAAAAGAATTTTACATTATGTAATGAGTCCTGTTTCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTTCTCACAAGGCATGAAAGAGAACACATAGGAATTGCCCCTGTCTAA

Protein sequence

MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAIIGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSNCPLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKNSVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGDEFGAIDIAGSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHEREHIGIAPV

Homology

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BLAST of Sed0023638 vs. NCBI nr
Match: KAA0038569.1 (E3 ubiquitin-protein ligase [Cucumis melo var. makuwa] >TYK31174.1 E3 ubiquitin-protein ligase [Cucumis melo var. makuwa])

HSP 1 Score: 612.8 bits (1579), Expect = 1.8e-171
Identity = 301/359 (83.84%), Postives = 326/359 (90.81%), Query Frame = 0


Query: 2   GSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAII 61
           GSYG+PKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPP PLEF DD+SG NFSPLVIAII
Sbjct: 4   GSYGNPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDNSGPNFSPLVIAII 63

Query: 62  GILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDEA 121
           GILASA+LL++YYT ISKYCGNTNRLS T  +DP+EE+EDNH PTLHEPWHVATTGLDEA
Sbjct: 64  GILASALLLVTYYTIISKYCGNTNRLSGTGNYDPSEEYEDNHNPTLHEPWHVATTGLDEA 123

Query: 122 LIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSNC 181
           LIKSITVCKYKRGDGLVEGSDCSVCL+EFQEDESLRLLPKCSHAFHL CIDTWLKSHSNC
Sbjct: 124 LIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNC 183

Query: 182 PLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKNS 241
           PLCRANI+S+ A SPVQLPA ST  PIT+E +P +S++NDHE VS +SG+SF NEDAKNS
Sbjct: 184 PLCRANIISINAGSPVQLPA-STAYPITNETVPESSQDNDHEAVSLDSGQSFSNEDAKNS 243

Query: 242 VRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGDEFGAIDIA 301
           VRAFSDLGNL+KRDT+IELRDG LQQIRRSISMDHCSQ+ +IIADVLR N DEFG ID A
Sbjct: 244 VRAFSDLGNLEKRDTIIELRDGRLQQIRRSISMDHCSQNRLIIADVLRLNEDEFGGIDEA 303

Query: 302 GSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHEREHIGIAPV 361
           GSSG VGSSKHS+ ED +SSHRKRILH VMSPVSMKRSFSSGR  LT+H REH GIAPV
Sbjct: 304 GSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVSMKRSFSSGRLSLTKHGREHRGIAPV 361

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BLAST of Sed0023638 vs. NCBI nr
Match: XP_016903486.1 (PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Cucumis melo])

HSP 1 Score: 611.7 bits (1576), Expect = 4.1e-171
Identity = 301/359 (83.84%), Postives = 325/359 (90.53%), Query Frame = 0


Query: 2   GSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAII 61
           GSYG+PKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPP PLEF DD+SG NFSPLVIAII
Sbjct: 4   GSYGNPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDNSGPNFSPLVIAII 63

Query: 62  GILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDEA 121
           GILASA+LL++YYT ISKYCGNTNRLS T  +DP+EE+EDNH PTLHEPWHVATTGLDEA
Sbjct: 64  GILASALLLVTYYTIISKYCGNTNRLSGTGNYDPSEEYEDNHNPTLHEPWHVATTGLDEA 123

Query: 122 LIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSNC 181
           LIKSITVCKYKRGDGLVEGSDCSVCL+EFQEDESLRLLPKCSHAFHL CIDTWLKSHSNC
Sbjct: 124 LIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNC 183

Query: 182 PLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKNS 241
           PLCRANI+S+ A SPVQLPA ST  PIT+E +P +S++NDHE VS +SG+SF NEDAKNS
Sbjct: 184 PLCRANIISINAGSPVQLPA-STAYPITNETVPESSQDNDHEAVSLDSGQSFSNEDAKNS 243

Query: 242 VRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGDEFGAIDIA 301
           VRAFSDLGNL+KRDT IELRDG LQQIRRSISMDHCSQ+ +IIADVLR N DEFG ID A
Sbjct: 244 VRAFSDLGNLEKRDTTIELRDGRLQQIRRSISMDHCSQNRLIIADVLRLNEDEFGGIDEA 303

Query: 302 GSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHEREHIGIAPV 361
           GSSG VGSSKHS+ ED +SSHRKRILH VMSPVSMKRSFSSGR  LT+H REH GIAPV
Sbjct: 304 GSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVSMKRSFSSGRLSLTKHGREHRGIAPV 361

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BLAST of Sed0023638 vs. NCBI nr
Match: XP_022159853.1 (RING-H2 finger protein ATL52-like isoform X1 [Momordica charantia])

HSP 1 Score: 609.4 bits (1570), Expect = 2.0e-170
Identity = 306/367 (83.38%), Postives = 320/367 (87.19%), Query Frame = 0


Query: 1   MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAI 60
           MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPP PLEF DDDSG NFSPLVIAI
Sbjct: 92  MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAI 151

Query: 61  IGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDE 120
           IGILASA LL+SYYT ISKYCGNTNRLSRT  HDPNEEFEDNH PTLHEPWH+ATTGLDE
Sbjct: 152 IGILASAFLLVSYYTIISKYCGNTNRLSRTGNHDPNEEFEDNHNPTLHEPWHIATTGLDE 211

Query: 121 ALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSN 180
           ALIKSITVCKYKRGDGLVEGSDC+VCL+EFQEDESLRLLPKCSHAFHL CIDTW KSHSN
Sbjct: 212 ALIKSITVCKYKRGDGLVEGSDCAVCLSEFQEDESLRLLPKCSHAFHLQCIDTWFKSHSN 271

Query: 181 CPLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNED--- 240
           CPLCRA IVS +ASSP QLP  ST  PITSE MP TS   DH+ VSQ+SGRSFGN+D   
Sbjct: 272 CPLCRAYIVSFSASSPFQLP-PSTAVPITSEAMPETSHTTDHDAVSQDSGRSFGNDDLMQ 331

Query: 241 ----AKNSVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGD 300
               AKNS RA SDLGNL+KRDTVIELRDG LQQIRRSISMDHC Q+H IIAD+L+ N D
Sbjct: 332 AHNCAKNSFRALSDLGNLEKRDTVIELRDGRLQQIRRSISMDHCCQNHTIIADILQLNED 391

Query: 301 EFGAIDIAGSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHERE 360
            FGAID +GSSG VGSSKHS+ ED KSSHRKRILH VMSPVSMKRSFSSGRF LTRH RE
Sbjct: 392 GFGAIDESGSSGDVGSSKHSVGEDSKSSHRKRILHCVMSPVSMKRSFSSGRFSLTRHGRE 451

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BLAST of Sed0023638 vs. NCBI nr
Match: KAG6606257.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036198.1 E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 609.0 bits (1569), Expect = 2.7e-170
Identity = 304/360 (84.44%), Postives = 323/360 (89.72%), Query Frame = 0


Query: 1   MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAI 60
           MGSYG+PKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPP PLEF DDDSG NFSPLVIAI
Sbjct: 1   MGSYGTPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAI 60

Query: 61  IGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDE 120
           IGILASA LL++YYT ISKY GNT+RLSRT+ HDPN+EFED H PTLHEPWHVATTGLDE
Sbjct: 61  IGILASAFLLITYYTIISKYYGNTSRLSRTQDHDPNQEFEDTHNPTLHEPWHVATTGLDE 120

Query: 121 ALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSN 180
           ALIK ITVCKYKRGDGLVEGSDCSVCL+EFQEDE+LRLLPKCSHAFHL CIDTWLKSHSN
Sbjct: 121 ALIKCITVCKYKRGDGLVEGSDCSVCLSEFQEDENLRLLPKCSHAFHLQCIDTWLKSHSN 180

Query: 181 CPLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKN 240
           CPLCRANIVSVTASSP+QLPAT T NP T+E +P TS+ NDHE +SQE GRSFGN++AKN
Sbjct: 181 CPLCRANIVSVTASSPLQLPAT-TGNPTTNEAIPETSQANDHEGISQEPGRSFGNDNAKN 240

Query: 241 SVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGDEFGAIDI 300
           SVRAFSDLGNL KRDTVIELRDG LQQIRRSISMDHCSQ+HIIIA       DEFG ID 
Sbjct: 241 SVRAFSDLGNLVKRDTVIELRDGRLQQIRRSISMDHCSQNHIIIA-------DEFGGIDE 300

Query: 301 AGSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHEREHIGIAPV 360
           AGSSG VGSSKHSM ED KS+HRKRILH VMSPVSMKRSFSSGRF LT+H REH G+APV
Sbjct: 301 AGSSGDVGSSKHSMGEDSKSNHRKRILHCVMSPVSMKRSFSSGRFSLTKHGREHRGLAPV 352

[Close]

BLAST of Sed0023638 vs. NCBI nr
Match: XP_022996182.1 (E3 ubiquitin-protein ligase Os04g0590900-like [Cucurbita maxima])

HSP 1 Score: 608.2 bits (1567), Expect = 4.5e-170
Identity = 304/360 (84.44%), Postives = 322/360 (89.44%), Query Frame = 0


Query: 1   MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAI 60
           MGSYG+PKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPP PLEF DDDSG NFSPLVIAI
Sbjct: 1   MGSYGTPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAI 60

Query: 61  IGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDE 120
           IGILASA LL++YYT ISKY GNT+RLSRT+ HDPN+EFED H PTLHEPWHVATTGLDE
Sbjct: 61  IGILASAFLLITYYTIISKYYGNTSRLSRTQDHDPNQEFEDTHNPTLHEPWHVATTGLDE 120

Query: 121 ALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSN 180
           ALIK ITVCKYKRGDGLVEGSDCSVCL+EFQEDESLRLLPKCSHAFHL CIDTWLKSHSN
Sbjct: 121 ALIKCITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSN 180

Query: 181 CPLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKN 240
           CPLCRANIVSVTASSP+QLPAT T NP T+E +P TS+ NDHE +SQE GRSFGN++AKN
Sbjct: 181 CPLCRANIVSVTASSPLQLPAT-TGNPTTNEAIPETSQANDHEGISQEPGRSFGNDNAKN 240

Query: 241 SVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGDEFGAIDI 300
           SVRAFSDLGNL KRD VIELRDG LQQIRRSISMDHCSQ+HIIIA       DEFG ID 
Sbjct: 241 SVRAFSDLGNLVKRDAVIELRDGRLQQIRRSISMDHCSQNHIIIA-------DEFGGIDE 300

Query: 301 AGSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHEREHIGIAPV 360
           AGSSG VGSSKHSM ED KS+HRKRILH VMSPVSMKRSFSSGRF LT+H REH G+APV
Sbjct: 301 AGSSGDVGSSKHSMGEDSKSNHRKRILHCVMSPVSMKRSFSSGRFSLTKHGREHRGLAPV 352

[Close]

BLAST of Sed0023638 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.2e-64
Identity = 162/374 (43.32%), Postives = 215/374 (57.49%), Query Frame = 0


Query: 6   SPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDD---SGLNFSPLVIAIIG 65
           +P  W PY S  DCSQG C++YCPQWCY++F PP P  F DDD   S  +FSPL+IA+IG
Sbjct: 4   NPNPWSPYDSYNDCSQGICNIYCPQWCYLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIG 63

Query: 66  ILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATT--GLDE 125
           IL SA++L+SYYT ISKYC   ++ S +   + N   E     T      ++T   GL+E
Sbjct: 64  ILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSST----QRISTNGDGLNE 123

Query: 126 ALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSN 185
           ++IKSITV KYK GDG V+GSDCSVCL+EF+E+ESLRLLPKC+HAFHL CIDTWLKSHSN
Sbjct: 124 SMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSN 183

Query: 186 CPLCRA--------------NIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVS 245
           CPLCRA              N+  V A+       T +V+ I   +    S+  D + V 
Sbjct: 184 CPLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVV 243

Query: 246 QESGRSFG--NEDAKNSVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIII 305
                  G  N DA++ ++        ++R+T    +D     IRRS+S++  S   + I
Sbjct: 244 VIEDLEIGSRNSDARSELQLPE-----ERRET----KDEDSLPIRRSVSLN--SGVVVSI 303

Query: 306 ADVLRFNGDEFGAIDIAGSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVS------MKR 353
           ADVLR   DE       G SGGVG+S+   RE+ +    K I     +  S        R
Sbjct: 304 ADVLREIEDE------EGESGGVGTSQR--REEGEDGDGKTIPPTEANQRSGGVSGFFVR 354

[Close]

BLAST of Sed0023638 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 241.9 bits (616), Expect = 1.1e-62
Identity = 158/366 (43.17%), Postives = 201/366 (54.92%), Query Frame = 0


Query: 6   SPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEF----TDDDSGLNFSPLVIAII 65
           S   W+PY   +DCSQG CS+YCPQWCY +F PP P +      DD SG  FSPLVIAII
Sbjct: 4   SAPAWVPYEPTRDCSQGLCSMYCPQWCYFIFPPPPPFDVAGTSADDSSGPVFSPLVIAII 63

Query: 66  GILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNE------------EFEDNHIPTLHE 125
           G+LASA LL+SYYTFISKYCG  + L R RV   +                 +     HE
Sbjct: 64  GVLASAFLLVSYYTFISKYCGTVSSL-RGRVFGSSSGGAAYGGGAGSGGRHGHGQSRSHE 123

Query: 126 PWHVA-TTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHL 185
            W+V+  +GLDE LI  ITVCKY+RGDG V  +DCSVCL EF + ESLRLLP+CSHAFH 
Sbjct: 124 SWNVSPPSGLDETLINKITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQ 183

Query: 186 LCIDTWLKSHSNCPLCRANIVSVT----ASSPVQLPATSTVNPITSEVMPVTSRENDHED 245
            CIDTWLKSHSNCPLCRANI  VT    +  P       T    T EV+ V     +  +
Sbjct: 184 QCIDTWLKSHSNCPLCRANITFVTVGLASPEPEGCAPGETGGDNTHEVVVVMDGLENLCE 243

Query: 246 VSQESGRSFGNEDAKNSVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIII 305
             QE+       D  +  +  ++   +++ +   E+R+      R + S D    + + I
Sbjct: 244 EQQEAVSRASTADDDHDAKDVAE--GMEEANGAAEIREEGSPPKRGASSFDLHRDNRMCI 303

Query: 306 ADVLRFN-GDEFGAIDIAG-SSGGVGSSKHSMREDIKS----SHRKRILHYVMSPVSMKR 345
           ADVL+ +  DE  A   +G  +GG G+S+    E+ K     S R   L   M  +  KR
Sbjct: 304 ADVLQESMEDELTAARESGLLAGGAGTSRRCHGENSKGRGGRSRRALQLQDAMEALPGKR 363

[Close]

BLAST of Sed0023638 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 226.5 bits (576), Expect = 4.9e-58
Identity = 146/327 (44.65%), Postives = 194/327 (59.33%), Query Frame = 0


Query: 1   MGSYGSPKTW-IPYMSNKDCSQGFCSVYCPQWCYIMFSPPQP--LEFTDDDSGLNFSPLV 60
           MGS G+P  W   Y S +DCSQG CSVYCPQWCY++F PP    L+  DD S  +FSPL+
Sbjct: 1   MGSTGNPNPWGTTYDSYRDCSQGVCSVYCPQWCYVIFPPPPSFYLDDEDDSSSSDFSPLL 60

Query: 61  IAIIGILASAVLLLSYYTFISKYC----GNTNRLSRTRVHDPNEEF-----EDNHIPTLH 120
           IA+IGILASA +L+SYYT ISKYC     N++  S   ++  + ++      +N+     
Sbjct: 61  IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGAT 120

Query: 121 EPWHV----ATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSH 180
            P          GLDE+LIKSITV KY++ DG VE SDCSVCL+EFQE+ESLRLLPKC+H
Sbjct: 121 NPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNH 180

Query: 181 AFHLLCIDTWLKSHSNCPLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHED 240
           AFH+ CIDTWLKSHSNCPLCRA IV+ +A   V L    T   I +E   +++ ++    
Sbjct: 181 AFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDL----TNQQIVTENNSISTGDDSVVV 240

Query: 241 VSQESGRSFGNEDAKNSVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIII 300
           V+ +   S    +  N        G+  K   + + RDG   + RRS S+ +     + I
Sbjct: 241 VNLDLENSRSRNETVNE-------GSTPKPPEMQDSRDG---EERRSASL-NSGGGVVSI 300

Query: 301 ADVLRFNGDEFGAIDIAGSSGGVGSSK 312
           AD+LR        I+    S GVG+S+
Sbjct: 301 ADILR-------EIEDDEESAGVGTSR 305

[Close]

BLAST of Sed0023638 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 189.5 bits (480), Expect = 6.6e-47
Identity = 105/225 (46.67%), Postives = 135/225 (60.00%), Query Frame = 0


Query: 1   MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWC-YIMFSPPQPL---EFTDDD--SGLNFS 60
           M S  +P  W  Y++ +DC+QG CS +CPQWC YI FSPP P+   +F +D   S  N S
Sbjct: 1   MESDPNPSAWNQYINPRDCTQGLCSTFCPQWCTYINFSPP-PISYEQFLNDGVASNPNLS 60

Query: 61  PLVIAIIGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIP---TLHEPW 120
           PLVIAI GI A+A LL +YYT +SKYC N            ++   D + P      +P+
Sbjct: 61  PLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPF 120

Query: 121 HV--ATTGLDEALIKSITVCKYKRGDG--LVEGSDCSVCLTEFQEDESLRLLPKCSHAFH 180
            +  +T GLD+ LIK I   K K+      + G+DCS+CL EF EDESLRLLPKC+H FH
Sbjct: 121 ALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFH 180

Query: 181 LLCIDTWLKSHSNCPLCRANIVSVTASSPVQLPATSTVNPITSEV 213
           ++CID WLKSHSNCPLCRA I+  T   P        ++  TS V
Sbjct: 181 VVCIDRWLKSHSNCPLCRAKIIVPTTQQPEHHVVVMNLDRFTSNV 224

[Close]

BLAST of Sed0023638 vs. ExPASy Swiss-Prot
Match: Q8LFY8 (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-36
Identity = 94/252 (37.30%), Postives = 124/252 (49.21%), Query Frame = 0


Query: 18  DCSQGFCSVYCPQWC-----YIMFSP--------PQP----------LEFTDDDSGLNFS 77
           DCS G C   CP  C     Y   SP        PQP          +     DS  +  
Sbjct: 22  DCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPCPSPSISAVYLPSQDSSSSLD 81

Query: 78  PLVIAIIGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPN--------EEFEDNHIPT 137
            + I  I     A+LL  ++     +  + NR+++      N        EEF+D     
Sbjct: 82  AISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVMEEEFQDRE-QV 141

Query: 138 LHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAF 197
            H  W + TTGL +++I SIT+C YKRGDGL+E +DC VCL EF+EDESLRLLPKC+HAF
Sbjct: 142 DHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAF 201

Query: 198 HLLCIDTWLKSHSNCPLCRANIVSVTASSP-VQLPATSTVNPITSEVMPVTSRENDHEDV 238
           H+ CIDTWL SH+NCPLCRA I  ++ ++P    P   T     S +      E DH ++
Sbjct: 202 HISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLENDGVDEEDHGEI 261

[Close]

BLAST of Sed0023638 vs. ExPASy TrEMBL
Match: A0A5D3E5F1 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004560 PE=3 SV=1)

HSP 1 Score: 612.8 bits (1579), Expect = 8.9e-172
Identity = 301/359 (83.84%), Postives = 326/359 (90.81%), Query Frame = 0


Query: 2   GSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAII 61
           GSYG+PKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPP PLEF DD+SG NFSPLVIAII
Sbjct: 4   GSYGNPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDNSGPNFSPLVIAII 63

Query: 62  GILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDEA 121
           GILASA+LL++YYT ISKYCGNTNRLS T  +DP+EE+EDNH PTLHEPWHVATTGLDEA
Sbjct: 64  GILASALLLVTYYTIISKYCGNTNRLSGTGNYDPSEEYEDNHNPTLHEPWHVATTGLDEA 123

Query: 122 LIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSNC 181
           LIKSITVCKYKRGDGLVEGSDCSVCL+EFQEDESLRLLPKCSHAFHL CIDTWLKSHSNC
Sbjct: 124 LIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNC 183

Query: 182 PLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKNS 241
           PLCRANI+S+ A SPVQLPA ST  PIT+E +P +S++NDHE VS +SG+SF NEDAKNS
Sbjct: 184 PLCRANIISINAGSPVQLPA-STAYPITNETVPESSQDNDHEAVSLDSGQSFSNEDAKNS 243

Query: 242 VRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGDEFGAIDIA 301
           VRAFSDLGNL+KRDT+IELRDG LQQIRRSISMDHCSQ+ +IIADVLR N DEFG ID A
Sbjct: 244 VRAFSDLGNLEKRDTIIELRDGRLQQIRRSISMDHCSQNRLIIADVLRLNEDEFGGIDEA 303

Query: 302 GSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHEREHIGIAPV 361
           GSSG VGSSKHS+ ED +SSHRKRILH VMSPVSMKRSFSSGR  LT+H REH GIAPV
Sbjct: 304 GSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVSMKRSFSSGRLSLTKHGREHRGIAPV 361

[Close]

BLAST of Sed0023638 vs. ExPASy TrEMBL
Match: A0A1S4E5H2 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103503554 PE=3 SV=1)

HSP 1 Score: 611.7 bits (1576), Expect = 2.0e-171
Identity = 301/359 (83.84%), Postives = 325/359 (90.53%), Query Frame = 0


Query: 2   GSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAII 61
           GSYG+PKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPP PLEF DD+SG NFSPLVIAII
Sbjct: 4   GSYGNPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDNSGPNFSPLVIAII 63

Query: 62  GILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDEA 121
           GILASA+LL++YYT ISKYCGNTNRLS T  +DP+EE+EDNH PTLHEPWHVATTGLDEA
Sbjct: 64  GILASALLLVTYYTIISKYCGNTNRLSGTGNYDPSEEYEDNHNPTLHEPWHVATTGLDEA 123

Query: 122 LIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSNC 181
           LIKSITVCKYKRGDGLVEGSDCSVCL+EFQEDESLRLLPKCSHAFHL CIDTWLKSHSNC
Sbjct: 124 LIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNC 183

Query: 182 PLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKNS 241
           PLCRANI+S+ A SPVQLPA ST  PIT+E +P +S++NDHE VS +SG+SF NEDAKNS
Sbjct: 184 PLCRANIISINAGSPVQLPA-STAYPITNETVPESSQDNDHEAVSLDSGQSFSNEDAKNS 243

Query: 242 VRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGDEFGAIDIA 301
           VRAFSDLGNL+KRDT IELRDG LQQIRRSISMDHCSQ+ +IIADVLR N DEFG ID A
Sbjct: 244 VRAFSDLGNLEKRDTTIELRDGRLQQIRRSISMDHCSQNRLIIADVLRLNEDEFGGIDEA 303

Query: 302 GSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHEREHIGIAPV 361
           GSSG VGSSKHS+ ED +SSHRKRILH VMSPVSMKRSFSSGR  LT+H REH GIAPV
Sbjct: 304 GSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVSMKRSFSSGRLSLTKHGREHRGIAPV 361

[Close]

BLAST of Sed0023638 vs. ExPASy TrEMBL
Match: A0A6J1E013 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111026146 PE=3 SV=1)

HSP 1 Score: 609.4 bits (1570), Expect = 9.9e-171
Identity = 306/367 (83.38%), Postives = 320/367 (87.19%), Query Frame = 0


Query: 1   MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAI 60
           MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPP PLEF DDDSG NFSPLVIAI
Sbjct: 92  MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAI 151

Query: 61  IGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDE 120
           IGILASA LL+SYYT ISKYCGNTNRLSRT  HDPNEEFEDNH PTLHEPWH+ATTGLDE
Sbjct: 152 IGILASAFLLVSYYTIISKYCGNTNRLSRTGNHDPNEEFEDNHNPTLHEPWHIATTGLDE 211

Query: 121 ALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSN 180
           ALIKSITVCKYKRGDGLVEGSDC+VCL+EFQEDESLRLLPKCSHAFHL CIDTW KSHSN
Sbjct: 212 ALIKSITVCKYKRGDGLVEGSDCAVCLSEFQEDESLRLLPKCSHAFHLQCIDTWFKSHSN 271

Query: 181 CPLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNED--- 240
           CPLCRA IVS +ASSP QLP  ST  PITSE MP TS   DH+ VSQ+SGRSFGN+D   
Sbjct: 272 CPLCRAYIVSFSASSPFQLP-PSTAVPITSEAMPETSHTTDHDAVSQDSGRSFGNDDLMQ 331

Query: 241 ----AKNSVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGD 300
               AKNS RA SDLGNL+KRDTVIELRDG LQQIRRSISMDHC Q+H IIAD+L+ N D
Sbjct: 332 AHNCAKNSFRALSDLGNLEKRDTVIELRDGRLQQIRRSISMDHCCQNHTIIADILQLNED 391

Query: 301 EFGAIDIAGSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHERE 360
            FGAID +GSSG VGSSKHS+ ED KSSHRKRILH VMSPVSMKRSFSSGRF LTRH RE
Sbjct: 392 GFGAIDESGSSGDVGSSKHSVGEDSKSSHRKRILHCVMSPVSMKRSFSSGRFSLTRHGRE 451

[Close]

BLAST of Sed0023638 vs. ExPASy TrEMBL
Match: A0A6J1K181 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111491489 PE=3 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 2.2e-170
Identity = 304/360 (84.44%), Postives = 322/360 (89.44%), Query Frame = 0


Query: 1   MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAI 60
           MGSYG+PKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPP PLEF DDDSG NFSPLVIAI
Sbjct: 1   MGSYGTPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAI 60

Query: 61  IGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDE 120
           IGILASA LL++YYT ISKY GNT+RLSRT+ HDPN+EFED H PTLHEPWHVATTGLDE
Sbjct: 61  IGILASAFLLITYYTIISKYYGNTSRLSRTQDHDPNQEFEDTHNPTLHEPWHVATTGLDE 120

Query: 121 ALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSN 180
           ALIK ITVCKYKRGDGLVEGSDCSVCL+EFQEDESLRLLPKCSHAFHL CIDTWLKSHSN
Sbjct: 121 ALIKCITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSN 180

Query: 181 CPLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKN 240
           CPLCRANIVSVTASSP+QLPAT T NP T+E +P TS+ NDHE +SQE GRSFGN++AKN
Sbjct: 181 CPLCRANIVSVTASSPLQLPAT-TGNPTTNEAIPETSQANDHEGISQEPGRSFGNDNAKN 240

Query: 241 SVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGDEFGAIDI 300
           SVRAFSDLGNL KRD VIELRDG LQQIRRSISMDHCSQ+HIIIA       DEFG ID 
Sbjct: 241 SVRAFSDLGNLVKRDAVIELRDGRLQQIRRSISMDHCSQNHIIIA-------DEFGGIDE 300

Query: 301 AGSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHEREHIGIAPV 360
           AGSSG VGSSKHSM ED KS+HRKRILH VMSPVSMKRSFSSGRF LT+H REH G+APV
Sbjct: 301 AGSSGDVGSSKHSMGEDSKSNHRKRILHCVMSPVSMKRSFSSGRFSLTKHGREHRGLAPV 352

[Close]

BLAST of Sed0023638 vs. ExPASy TrEMBL
Match: A0A6J1EXP0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111437432 PE=3 SV=1)

HSP 1 Score: 607.1 bits (1564), Expect = 4.9e-170
Identity = 303/360 (84.17%), Postives = 322/360 (89.44%), Query Frame = 0


Query: 1   MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDDSGLNFSPLVIAI 60
           MGSYG+PKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPP PLEF DDDSG NFSPLVIAI
Sbjct: 1   MGSYGTPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPDDDSGPNFSPLVIAI 60

Query: 61  IGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATTGLDE 120
           IGILASA LL++YYT ISKY GNT+RLSRT+ HDPN+EFED H PTLHEPWHVATTGLDE
Sbjct: 61  IGILASAFLLITYYTIISKYYGNTSRLSRTQDHDPNQEFEDTHNPTLHEPWHVATTGLDE 120

Query: 121 ALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSN 180
           ALIK ITVCKYKRGDGLVEGSDCSVCL+EFQEDE+LRLLPKCSHAFHL CIDTWLKSHSN
Sbjct: 121 ALIKCITVCKYKRGDGLVEGSDCSVCLSEFQEDENLRLLPKCSHAFHLQCIDTWLKSHSN 180

Query: 181 CPLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKN 240
           CPLCRANIVSVTASSP+QLPAT T NP T+E +P TS+ NDHE +SQE GRSFGN++AKN
Sbjct: 181 CPLCRANIVSVTASSPLQLPAT-TGNPTTNEAIPETSQANDHEGISQEPGRSFGNDNAKN 240

Query: 241 SVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIIIADVLRFNGDEFGAIDI 300
           SVRAFSDLGNL KRDT IELRDG LQQIRRSISMDHCSQ+HIIIA       DEFG ID 
Sbjct: 241 SVRAFSDLGNLVKRDTFIELRDGRLQQIRRSISMDHCSQNHIIIA-------DEFGGIDE 300

Query: 301 AGSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVSMKRSFSSGRFFLTRHEREHIGIAPV 360
           AGSSG VGSSKHSM ED KS+HRKRILH VMSPVSMKRSFSSGRF LT+H REH G+APV
Sbjct: 301 AGSSGDVGSSKHSMGEDSKSNHRKRILHCVMSPVSMKRSFSSGRFSLTKHGREHRGLAPV 352

[Close]

BLAST of Sed0023638 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 248.4 bits (633), Expect = 8.5e-66
Identity = 162/374 (43.32%), Postives = 215/374 (57.49%), Query Frame = 0


Query: 6   SPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPQPLEFTDDD---SGLNFSPLVIAIIG 65
           +P  W PY S  DCSQG C++YCPQWCY++F PP P  F DDD   S  +FSPL+IA+IG
Sbjct: 4   NPNPWSPYDSYNDCSQGICNIYCPQWCYLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIG 63

Query: 66  ILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIPTLHEPWHVATT--GLDE 125
           IL SA++L+SYYT ISKYC   ++ S +   + N   E     T      ++T   GL+E
Sbjct: 64  ILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSST----QRISTNGDGLNE 123

Query: 126 ALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSN 185
           ++IKSITV KYK GDG V+GSDCSVCL+EF+E+ESLRLLPKC+HAFHL CIDTWLKSHSN
Sbjct: 124 SMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSN 183

Query: 186 CPLCRA--------------NIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHEDVS 245
           CPLCRA              N+  V A+       T +V+ I   +    S+  D + V 
Sbjct: 184 CPLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVV 243

Query: 246 QESGRSFG--NEDAKNSVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIII 305
                  G  N DA++ ++        ++R+T    +D     IRRS+S++  S   + I
Sbjct: 244 VIEDLEIGSRNSDARSELQLPE-----ERRET----KDEDSLPIRRSVSLN--SGVVVSI 303

Query: 306 ADVLRFNGDEFGAIDIAGSSGGVGSSKHSMREDIKSSHRKRILHYVMSPVS------MKR 353
           ADVLR   DE       G SGGVG+S+   RE+ +    K I     +  S        R
Sbjct: 304 ADVLREIEDE------EGESGGVGTSQR--REEGEDGDGKTIPPTEANQRSGGVSGFFVR 354

[Close]

BLAST of Sed0023638 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 226.5 bits (576), Expect = 3.5e-59
Identity = 146/327 (44.65%), Postives = 194/327 (59.33%), Query Frame = 0


Query: 1   MGSYGSPKTW-IPYMSNKDCSQGFCSVYCPQWCYIMFSPPQP--LEFTDDDSGLNFSPLV 60
           MGS G+P  W   Y S +DCSQG CSVYCPQWCY++F PP    L+  DD S  +FSPL+
Sbjct: 1   MGSTGNPNPWGTTYDSYRDCSQGVCSVYCPQWCYVIFPPPPSFYLDDEDDSSSSDFSPLL 60

Query: 61  IAIIGILASAVLLLSYYTFISKYC----GNTNRLSRTRVHDPNEEF-----EDNHIPTLH 120
           IA+IGILASA +L+SYYT ISKYC     N++  S   ++  + ++      +N+     
Sbjct: 61  IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGAT 120

Query: 121 EPWHV----ATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSH 180
            P          GLDE+LIKSITV KY++ DG VE SDCSVCL+EFQE+ESLRLLPKC+H
Sbjct: 121 NPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNH 180

Query: 181 AFHLLCIDTWLKSHSNCPLCRANIVSVTASSPVQLPATSTVNPITSEVMPVTSRENDHED 240
           AFH+ CIDTWLKSHSNCPLCRA IV+ +A   V L    T   I +E   +++ ++    
Sbjct: 181 AFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDL----TNQQIVTENNSISTGDDSVVV 240

Query: 241 VSQESGRSFGNEDAKNSVRAFSDLGNLDKRDTVIELRDGILQQIRRSISMDHCSQSHIII 300
           V+ +   S    +  N        G+  K   + + RDG   + RRS S+ +     + I
Sbjct: 241 VNLDLENSRSRNETVNE-------GSTPKPPEMQDSRDG---EERRSASL-NSGGGVVSI 300

Query: 301 ADVLRFNGDEFGAIDIAGSSGGVGSSK 312
           AD+LR        I+    S GVG+S+
Sbjct: 301 ADILR-------EIEDDEESAGVGTSR 305

[Close]

BLAST of Sed0023638 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 189.5 bits (480), Expect = 4.7e-48
Identity = 105/225 (46.67%), Postives = 135/225 (60.00%), Query Frame = 0


Query: 1   MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWC-YIMFSPPQPL---EFTDDD--SGLNFS 60
           M S  +P  W  Y++ +DC+QG CS +CPQWC YI FSPP P+   +F +D   S  N S
Sbjct: 1   MESDPNPSAWNQYINPRDCTQGLCSTFCPQWCTYINFSPP-PISYEQFLNDGVASNPNLS 60

Query: 61  PLVIAIIGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPNEEFEDNHIP---TLHEPW 120
           PLVIAI GI A+A LL +YYT +SKYC N            ++   D + P      +P+
Sbjct: 61  PLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPF 120

Query: 121 HV--ATTGLDEALIKSITVCKYKRGDG--LVEGSDCSVCLTEFQEDESLRLLPKCSHAFH 180
            +  +T GLD+ LIK I   K K+      + G+DCS+CL EF EDESLRLLPKC+H FH
Sbjct: 121 ALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFH 180

Query: 181 LLCIDTWLKSHSNCPLCRANIVSVTASSPVQLPATSTVNPITSEV 213
           ++CID WLKSHSNCPLCRA I+  T   P        ++  TS V
Sbjct: 181 VVCIDRWLKSHSNCPLCRAKIIVPTTQQPEHHVVVMNLDRFTSNV 224

[Close]

BLAST of Sed0023638 vs. TAIR 10
Match: AT1G72220.1 (RING/U-box superfamily protein )

HSP 1 Score: 155.6 bits (392), Expect = 7.5e-38
Identity = 94/252 (37.30%), Postives = 124/252 (49.21%), Query Frame = 0


Query: 18  DCSQGFCSVYCPQWC-----YIMFSP--------PQP----------LEFTDDDSGLNFS 77
           DCS G C   CP  C     Y   SP        PQP          +     DS  +  
Sbjct: 22  DCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPCPSPSISAVYLPSQDSSSSLD 81

Query: 78  PLVIAIIGILASAVLLLSYYTFISKYCGNTNRLSRTRVHDPN--------EEFEDNHIPT 137
            + I  I     A+LL  ++     +  + NR+++      N        EEF+D     
Sbjct: 82  AISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVMEEEFQDRE-QV 141

Query: 138 LHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLTEFQEDESLRLLPKCSHAF 197
            H  W + TTGL +++I SIT+C YKRGDGL+E +DC VCL EF+EDESLRLLPKC+HAF
Sbjct: 142 DHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAF 201

Query: 198 HLLCIDTWLKSHSNCPLCRANIVSVTASSP-VQLPATSTVNPITSEVMPVTSRENDHEDV 238
           H+ CIDTWL SH+NCPLCRA I  ++ ++P    P   T     S +      E DH ++
Sbjct: 202 HISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLENDGVDEEDHGEI 261

[Close]

BLAST of Sed0023638 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 142.9 bits (359), Expect = 5.0e-34
Identity = 86/252 (34.13%), Postives = 125/252 (49.60%), Query Frame = 0


Query: 30  QWCYIMFSPPQPLEFTDDDSGLNFSPLVIAIIGILASAVLLLSYYTFISKYCGNTNRLSR 89
           ++C+  + PP P      +  L   P  I ++G   S +L L    F+  +     R+S 
Sbjct: 19  RFCFRQYPPPPPPPPPPRELSL-LLPTSICVVG---SIILFLFLVFFLYLHITQQRRISA 78

Query: 90  -------TRVHDPNEEFEDNHIPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSD 149
                  T   +  +E E+      H  W + T GL  + I SITV  +K+G+G+++G++
Sbjct: 79  ASVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTE 138

Query: 150 CSVCLTEFQEDESLRLLPKCSHAFHLLCIDTWLKSHSNCPLCRANIVSVTASSPVQLPAT 209
           CSVCL EF+EDESLRLLPKCSHAFHL CIDTWL SH NCPLCRA ++ +T          
Sbjct: 139 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEP-------- 198

Query: 210 STVNPITSEVMPVTSRENDHEDVSQESGRSFGNEDAKNSVRAFSDLGNLDKRDTVIELRD 269
                      P    E +H+  S+ S    G +D+  S R  +      + D       
Sbjct: 199 -----------PHQETETNHQPDSESSNDLRGRQDSSRSRRNHNIFLPRAQSDLANYCGS 247

Query: 270 GILQQIRRSISM 275
           G ++ +RRS S+
Sbjct: 259 GRVENVRRSFSI 247

The following BLAST results are available for this feature:

BLAST of Sed0023638 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038569.1	1.8e-171	83.84	E3 ubiquitin-protein ligase [Cucumis melo var. makuwa] >TYK31174.1 E3 ubiquitin-...	[more]
XP_016903486.1	4.1e-171	83.84	PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Cucumis melo]	[more]
XP_022159853.1	2.0e-170	83.38	RING-H2 finger protein ATL52-like isoform X1 [Momordica charantia]	[more]
KAG6606257.1	2.7e-170	84.44	E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]
XP_022996182.1	4.5e-170	84.44	E3 ubiquitin-protein ligase Os04g0590900-like [Cucurbita maxima]	[more]

BLAST of Sed0023638 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	1.2e-64	43.32	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q7XLY8	1.1e-62	43.17	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9SRQ8	4.9e-58	44.65	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
P0C041	6.6e-47	46.67	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q8LFY8	1.1e-36	37.30	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2	[more]

BLAST of Sed0023638 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E5F1	8.9e-172	83.84	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4E5H2	2.0e-171	83.84	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103503554 PE=3 ...	[more]
A0A6J1E013	9.9e-171	83.38	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11102614...	[more]
A0A6J1K181	2.2e-170	84.44	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111491489 P...	[more]
A0A6J1EXP0	4.9e-170	84.17	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111437432...	[more]

BLAST of Sed0023638 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	8.5e-66	43.32	RING/U-box superfamily protein	[more]
AT3G03550.1	3.5e-59	44.65	RING/U-box superfamily protein	[more]
AT4G17905.1	4.7e-48	46.67	RING/U-box superfamily protein	[more]
AT1G72220.1	7.5e-38	37.30	RING/U-box superfamily protein	[more]
AT5G10380.1	5.0e-34	34.13	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 143..184 e-value: 1.8E-7 score: 40.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 142..185 e-value: 7.7E-13 score: 48.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 143..185 score: 12.681067
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 118..193 e-value: 3.2E-21 score: 76.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..236
None	No IPR available	PANTHER	PTHR45676:SF108	E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE	coord: 6..224
None	No IPR available	PANTHER	PTHR45676:SF108	E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE	coord: 264..352
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 142..185 e-value: 4.66616E-16 score: 69.2611
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 131..193
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 6..224 coord: 264..352

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023638.1	Sed0023638.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane