Sed0023611 (gene) Chayote v1

Overview
NameSed0023611
Typegene
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S13
LocationLG09: 907256 .. 910912 (+)
RNA-Seq ExpressionSed0023611
SyntenySed0023611
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATATAACTAATTATGGTCCGGGTTGGGTAGAGGCCCAGCCCAAAGTGGACGGCAAATCCCCAAAAGCATAACCAAAACCCTAAAAGCCGCCATTGTTTTACAGTGTTCATCAAAAGAGCTTAGCAGAGTGTAAGGCGTCTTCTTCTCCACGCGCCGCCGCCGCCGCCGCCGCCATGGGTCGTATGCACAGTCGAGGGTTCGTCTTTACTTCCAAAATGAAACATTGCCTCTAAATCTTCATCCACAAATTGTTTTGTTATTTTGTTATTTTGATTTTTGTAGAAAGGGTATTTCAGCTTCAGCACTGCCTTACAAGAGGACTCCACCAAGTTGGTTGAAGATCTCTTCTCAGGATGTGAGAATTCTGAGCCTTACTTTTGTAATTTTTTTTTTTTTTTTTTTTTTTGGGATTGGGTATTGATTGTTTTATTTAGTTAGAAATGGAAATTTATGGAATAGGGGATGTTTGATTTAATGTAGATTATATTAGTTTTCATGGTGTTATAGAGTTGTTCCATCATGAGTTAATACTGAGAATATCATTGCCTATTGTATGTGAAAAAAAAGGTTTTTAATGTTTTTATGATGGTTCAGTCTTCTGATCCTTCAGTTCTTGAGCATGTATGTAGGTTATGTGATAAAAAATATAGTTCCTTCTTTTTAAAGATCATGAAATGTCCTAGTGGTCGAGAGGGCATAAGGGAAGATGATTGATAAGACTATATGTCCCATGAAAATAGTTGAGATACTTGTAAGCTAGGTCGTACACTCATAGTCATAGATATAATAGAAAAAAAAATATTTGTTAATTTTTGGTGATTTTTCATGAGTAGCAAAAAATAAAGGATTGATTCCAATATAACATGAATGATTCCATCACCTTAAATTAATAGCTTTGATAGGCTTCTACCAAGTGTGAATGTTCAATCAAGTGAAATCGATAGCCCTCAATTTGAAATGAAATTGTTTATAAGTCGCTATAATTAAAATAGTGATGTAAGAGTCCCCAAGAGGTGGTGCAATGATTGAAGACTTGGGCTTTGAGAGTATGCACCCTGCAAGGTTCTGGGTTCGAGACTCACCTATGACATTACTCCTTCGATGTCTTTGGTGTCTGGCCTAGGGATGGGCGTGGTTACCCTTGTTGCTATCTACAAAAAAATTCCTAGGACATTTCTTAAATTCTTATTGGAGGATGGTGACATTGCTTAAATTCTTAGTGTCATCTAAGTGCATTTGAATGTAATTTTAAATGTTAGTCATTCTAATTGAATGGAGGTTGATCTCTCTACTACCTGTAGAAATTGATGACTTTCGTTTAATGGCTCAGGTTGACGAGAACATTTGCAAATTTGCCAAGAAGGGTATGACACCATCTCAAATTGGCGTAATTCTTCGTGATTCTTATGGGATTGCTCAAGTCAAAAGTGTAACTGGGAGCAAGATTTTGCGCATATTGAAGGCTCATGGTATGCCCCATTCACCCTTCATCCACTGAATTTCTTTTCTTTTGTACTTGAATAAGTTTTTGTGCATATTGTCCCTGAGGGGTGGCACAGTGGTTGAAAATTTGGGATTGGAAGGTATGTTTCCTTCAAGGTCTCAGGTTTGAGACTTCCATACCTGTGACATTACTCCTTCGATATCTCCCGGTGCCTGACCTAGGGACAGGTGTGGTTACCTTGTTTCAAAATAAATAAATAAGTTTATGTGCATATTGAGACTCGTGGTGTGCACCATGGCCCTTGGTGTTCTCCAAAAATGGCATGATGATTTAAGGCTTGGGCTTTGAAGGTGTGCTCCCCTCAAGATCCCATGTTTGAGACTGCTTGTGACATTAATTTGTAGACACCTCTGTGTCTCCATTCCTTCGATGTCTCCCAATGCCTGACTTAGAGACGGGCAGGGTTGCCCTAGGTATAGAGGAGTGAAGCTCCGATTTCTCGATTTCCAAAAAACAAATGTGACTTTGATGTCCATTTGTTCTTCCTTTTGCTCAGGGCTAGCTCCTGAAATCCCTGAGGATCTTTATCATCTCATCAAGAAAGCTGTATCAATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAGGATTCCAAATTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAGTAAGTATTTTGACGCACAAAAGAACATAAATTATTTACTAATTTCACTTCTGCAGAAAATATTGCATGAGGTAGATTAAATTAGCCTTTTAAATTACTTTTCAAATTCAGAAAAAAAAATAGCAAATATCGTCCCCAAGGGGTGGCGCAGTGGTTGAAAACTTGGACTTTGAGGGGTATGCTTTTCTCAAGGTTCCGAGTTCGAGTCTTTCCTATAAGGGTACTCCTTCGATGTCTCCAGTGTCTGGCCTAAAGACGGGCATGGTTATCCTTGTTTCAGAAAAAAAATAATAATAATAATAATATCTGTTCGTTAGTATCAAAACAGCAACTAGATTTTTCGTTCTTTTTTAGGGAGGGTGGGGGGGTTGATCTAATCATAGGGGAGATATAGGTGCATGACAAGAACTAGATTTATGATTTATCTCATCAAACATGAAATAAAATGTAGCTTTGTTAAACCACCTTAGTGGTTATTGGTTAAGCGTCGTGTATATAAAGAAGGGCTAGGAAATATTTTACAACAATGTTAGTCACTTCCATCATGGAGTGGCCTATTGGTCAAGCGGGTCTTGGGAAACTAAGAGGTGTTGGGTTCAATCCATGGTGGCCACCTAACTAAGAATTAATTTCCTACGAGTTTTCTTGACAACTGAATGTAACAGGGTTAGACGGGTATAACTCGTGACAATAGTCGAGGTTCACGCAAGTTGGCTTGGACAATCACTAGCATAAAAGAAAATGTTAGACACTTTCATAGTATTTAATATCTTATAGGTCACCTCAACAATTTGTCTTAAAAGAATAGTCGAGATATATGCAAAATAGCTCTAACGCTCATAGATATTAGATTATAAGTTACAGTTTTAAGAAGTGTAAAGCCAAACTTCTCGAATTCTTATTTAACATTAGGATGAGGACACCATCTAAAGTTTGTTAATTAATGCTGAATTCTTTTATAGGTGCATTAGGATGAGGTGCTTTAAGAACTGTCAATTTTACTAATCCTTATGTAAAACTGTTGGTTTGAAAGATCTTTCAAATCACTTTAGCAGTTCCTTGATTTATAGCTTTTCATCTTTCGTTTAATCTTGGCTTTAAATTGTAGGTCTAGTTCAAGATACTCTATTGGGTTTATTGTTCTTTCTTTTTTATTTCGGGCATATTATTATATGCTTTGTTTCGTTTATTAATGAAGTGTTTTTATTTTTTTAAATATTTTACAGTGAATCTACCACGGCCAGCACCCTCGTGGCTTAGAAGCAAGTTTTTGGCGATCTAAGGATTTATTTTGGCGATGCAACTTTCCATCAAGGATTGTGTTTAATATGTTATCAATACACTCACATGCAATTGTTCATCTTGTGCCCTCACTATGAAATCATTCAAGTTTTGATACACTCTTAATGCAAATTTGATTTATGCAATTCTTTTAAACCATTCATGATGATGATCATTTATCTGAGAAA

mRNA sequence

GATATAACTAATTATGGTCCGGGTTGGGTAGAGGCCCAGCCCAAAGTGGACGGCAAATCCCCAAAAGCATAACCAAAACCCTAAAAGCCGCCATTGTTTTACAGTGTTCATCAAAAGAGCTTAGCAGAGTGTAAGGCGTCTTCTTCTCCACGCGCCGCCGCCGCCGCCGCCGCCATGGGTCGTATGCACAGTCGAGGAAAGGGTATTTCAGCTTCAGCACTGCCTTACAAGAGGACTCCACCAAGTTGGTTGAAGATCTCTTCTCAGGATGTTGACGAGAACATTTGCAAATTTGCCAAGAAGGGTATGACACCATCTCAAATTGGCGTAATTCTTCGTGATTCTTATGGGATTGCTCAAGTCAAAAGTGTAACTGGGAGCAAGATTTTGCGCATATTGAAGGCTCATGGGCTAGCTCCTGAAATCCCTGAGGATCTTTATCATCTCATCAAGAAAGCTGTATCAATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAGGATTCCAAATTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTATGAATCTACCACGGCCAGCACCCTCGTGGCTTAGAAGCAAGTTTTTGGCGATCTAAGGATTTATTTTGGCGATGCAACTTTCCATCAAGGATTGTGTTTAATATGTTATCAATACACTCACATGCAATTGTTCATCTTGTGCCCTCACTATGAAATCATTCAAGTTTTGATACACTCTTAATGCAAATTTGATTTATGCAATTCTTTTAAACCATTCATGATGATGATCATTTATCTGAGAAA

Coding sequence (CDS)

ATGGGTCGTATGCACAGTCGAGGAAAGGGTATTTCAGCTTCAGCACTGCCTTACAAGAGGACTCCACCAAGTTGGTTGAAGATCTCTTCTCAGGATGTTGACGAGAACATTTGCAAATTTGCCAAGAAGGGTATGACACCATCTCAAATTGGCGTAATTCTTCGTGATTCTTATGGGATTGCTCAAGTCAAAAGTGTAACTGGGAGCAAGATTTTGCGCATATTGAAGGCTCATGGGCTAGCTCCTGAAATCCCTGAGGATCTTTATCATCTCATCAAGAAAGCTGTATCAATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAGGATTCCAAATTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTATGAATCTACCACGGCCAGCACCCTCGTGGCTTAG

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Homology
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BLAST of Sed0023611 vs. NCBI nr
Match: XP_012829904.1 (PREDICTED: 40S ribosomal protein S13 [Erythranthe guttata] >XP_012829905.1 PREDICTED: 40S ribosomal protein S13 [Erythranthe guttata] >XP_012852014.1 PREDICTED: 40S ribosomal protein S13 [Erythranthe guttata] >PSS21582.1 40S ribosomal protein S13 [Actinidia chinensis var. chinensis] >EYU24992.1 hypothetical protein MIMGU_mgv1a015639mg [Erythranthe guttata] >EYU43531.1 hypothetical protein MIMGU_mgv1a015622mg [Erythranthe guttata] >EYU43532.1 hypothetical protein MIMGU_mgv1a015628mg [Erythranthe guttata] >PSS24155.1 40S ribosomal protein S13 [Actinidia chinensis var. chinensis])

HSP 1 Score: 297.4 bits (760), Expect = 7.2e-77
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

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BLAST of Sed0023611 vs. NCBI nr
Match: XP_010101741.2 (40S ribosomal protein S13 [Morus notabilis] >XP_022152725.1 40S ribosomal protein S13 [Momordica charantia])

HSP 1 Score: 297.4 bits (760), Expect = 7.2e-77
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. NCBI nr
Match: XP_017423846.1 (PREDICTED: 40S ribosomal protein S13-like [Vigna angularis] >KAG2408302.1 40S ribosomal protein [Vigna angularis])

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-76
Identity = 148/151 (98.01%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDVDENICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. NCBI nr
Match: XP_010053902.1 (40S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal protein S13 [Eucalyptus grandis] >XP_030468523.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030468524.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030529924.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030529925.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030544418.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_031376603.1 40S ribosomal protein S13 [Punica granatum] >XP_031381691.1 40S ribosomal protein S13 [Punica granatum] >KAF3439993.1 hypothetical protein FNV43_RR18271 [Rhamnella rubrinervis] >KAF8020424.1 hypothetical protein BT93_G0976 [Corymbia citriodora subsp. variegata] >PON34614.1 Ribosomal protein [Parasponia andersonii] >KAF3440239.1 hypothetical protein FNV43_RR18522 [Rhamnella rubrinervis] >KAF8020425.1 hypothetical protein BT93_G0977 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 295.8 bits (756), Expect = 2.1e-76
Identity = 148/151 (98.01%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. NCBI nr
Match: KAF3433118.1 (hypothetical protein FNV43_RR24220 [Rhamnella rubrinervis])

HSP 1 Score: 295.8 bits (756), Expect = 2.1e-76
Identity = 148/151 (98.01%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 106 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 165

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 166 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 225

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 226 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 256

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BLAST of Sed0023611 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.3e-78
Identity = 146/151 (96.69%), Postives = 150/151 (99.34%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDV+ENICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 6.3e-76
Identity = 142/151 (94.04%), Postives = 148/151 (98.01%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQDVDE+ICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-75
Identity = 142/151 (94.04%), Postives = 148/151 (98.01%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGR+HS+GKGIS+SALPY+RT PSWLKISSQDVDE ICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.4e-75
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDVDE+ICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.7e-69
Identity = 131/151 (86.75%), Postives = 139/151 (92.05%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK ++ DV+E I K AKKG  PSQIGV+LRD +GI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. ExPASy TrEMBL
Match: A0A022Q8L1 (Ribosomal_S13_N domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a015622mg PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.5e-77
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. ExPASy TrEMBL
Match: A0A2R6R6F9 (40S ribosomal protein S13 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09035 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.5e-77
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. ExPASy TrEMBL
Match: A0A6J1DES0 (40S ribosomal protein S13 OS=Momordica charantia OX=3673 GN=LOC111020380 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.5e-77
Identity = 149/151 (98.68%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. ExPASy TrEMBL
Match: A0A218X097 (40S ribosomal protein S13 OS=Punica granatum OX=22663 GN=LOC116196213 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.0e-76
Identity = 148/151 (98.01%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. ExPASy TrEMBL
Match: A0A2P5ADI8 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_342800 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.0e-76
Identity = 148/151 (98.01%), Postives = 151/151 (100.00%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDV+ENICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 284.6 bits (727), Expect = 4.5e-77
Identity = 142/151 (94.04%), Postives = 148/151 (98.01%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQDVDE+ICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]
BLAST of Sed0023611 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 282.7 bits (722), Expect = 1.7e-76
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0 

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGMTPSQIGVILRDSYGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDVDE+ICKFAKKG+TPSQIGVILRDS+GI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:
BLAST of Sed0023611 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_012829904.17.2e-7798.68PREDICTED: 40S ribosomal protein S13 [Erythranthe guttata] >XP_012829905.1 PREDI... [more]
XP_010101741.27.2e-7798.6840S ribosomal protein S13 [Morus notabilis] >XP_022152725.1 40S ribosomal protei... [more]
XP_017423846.11.6e-7698.01PREDICTED: 40S ribosomal protein S13-like [Vigna angularis] >KAG2408302.1 40S ri... [more]
XP_010053902.12.1e-7698.0140S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal pro... [more]
KAF3433118.12.1e-7698.01hypothetical protein FNV43_RR24220 [Rhamnella rubrinervis][more]
BLAST of Sed0023611 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623022.3e-7896.6940S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P592246.3e-7694.0440S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
P462981.1e-7594.0440S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1[more]
P592232.4e-7593.3840S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
Q69UI15.7e-6986.7540S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011... [more]
BLAST of Sed0023611 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A022Q8L13.5e-7798.68Ribosomal_S13_N domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMG... [more]
A0A2R6R6F93.5e-7798.6840S ribosomal protein S13 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE... [more]
A0A6J1DES03.5e-7798.6840S ribosomal protein S13 OS=Momordica charantia OX=3673 GN=LOC111020380 PE=3 SV... [more]
A0A218X0971.0e-7698.0140S ribosomal protein S13 OS=Punica granatum OX=22663 GN=LOC116196213 PE=3 SV=1[more]
A0A2P5ADI81.0e-7698.01Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_342800 PE=3 SV=... [more]
BLAST of Sed0023611 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G00100.14.5e-7794.04ribosomal protein S13A [more]
AT3G60770.11.7e-7693.38Ribosomal protein S13/S15 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 70..149
e-value: 2.9E-15
score: 66.7
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 74..145
e-value: 4.7E-15
score: 55.5
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 98..128
IPR000589Ribosomal protein S15CDDcd00353Ribosomal_S15p_S13ecoord: 70..143
e-value: 4.68544E-27
score: 94.8774
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..60
e-value: 3.0E-39
score: 146.4
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 1..60
e-value: 2.3E-31
score: 107.7
NoneNo IPR availableGENE3D1.10.287.10coord: 83..151
e-value: 8.8E-41
score: 140.1
NoneNo IPR availableGENE3D4.10.860.130coord: 35..82
e-value: 7.0E-29
score: 101.3
NoneNo IPR availablePANTHERPTHR11885:SF2240S RIBOSOMAL PROTEIN S13coord: 1..151
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 1..151
IPR023029Ribosomal protein S15PHAMAPMF_01343_ARibosomal_S15_Acoord: 3..149
score: 32.233356
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 66..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023611.1Sed0023611.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome