Sed0023596 (gene) Chayote v1

Overview


Name	Sed0023596
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Poly(A)-specific ribonuclease
Location	LG11: 922154 .. 923080 (+)
RNA-Seq Expression	Sed0023596
Synteny	Sed0023596

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTAATCAATCAATGTTGATGAATTCAAATTCAAGCAATCGAGAGGTTTGGTCTTACAACCTTTGTTACGAGTTAGAACTTATGAAGGAATATTTGATAGAGTTTCCTATAGTTGCCATAGATACTGAGTTCCCGGGTTTTCTCCGATACACTCCGAAAGGCGTTTCGGAAAAAGAGTTTTACGAGTGTCTTCGATTCAATGTCGACCGGCTGAGCATTCTTCAACTCGGTCTCACACTCACCGACCACCAAGGAAACATTGGCATGACTTGGGAGTTCAATTTCCAAGACTACGATATAATATCTGACATGGAAGGAGTAACGTCACTTGATTCGTTTCTCAAGAATAAGGGGTTTGACTTTGAAAAGTTAAGCATATATGGAATCGCACCCGAGGAGTTTGCAACCTTGTTTCTACCGATTTGTCAAAGTGGTCGAATCGACAAATGGATCACATTCCACGGATTTTACGACATTGCCTACGTAATGAAGCTTTTGAATGTCAACCCCATGCCGATCTCGATGGTGATATTCGCAATCACGGCTCAGCTATTATTGGGAACGATCATTGATCTTAAACACATGGCTAGTTATTGTCATGGTTTGTTTAATGGCGATTTAGGGCTAAAAAGGTTGGCGAAATTGCTCGGCGTTAGTCGAGTAGGTATTGCACATTTTGCTGGTTCGGATAGTTTGCTCACAGCTTCAGTTTATGCCAAGATGAAAATGATGTTCATGCTTCAACCAGAGCAATGTGACGGTTTCTTATACGGATTGCCTCATCGGATTTTTCGATCTTCTCGACCGGCTTTGAAGATTGTCAATCCATCTCCAGTGACTCTAAAGTGTTCTTTGTTGCCTTTTAGATCATCACAGAACGATTCTTTAATGGTCTCCAAAAATACAAACTTGGTTGTATAG

mRNA sequence

ATGGAAATTAATCAATCAATGTTGATGAATTCAAATTCAAGCAATCGAGAGGTTTGGTCTTACAACCTTTGTTACGAGTTAGAACTTATGAAGGAATATTTGATAGAGTTTCCTATAGTTGCCATAGATACTGAGTTCCCGGAGTTTTACGAGTGTCTTCGATTCAATGTCGACCGGCTGAGCATTCTTCAACTCGGTCTCACACTCACCGACCACCAAGGAAACATTGGCATGACTTGGGAGTTCAATTTCCAAGACTACGATATAATATCTGACATGGAAGGAGTAACGTCACTTGATTCGTTTCTCAAGAATAAGGGGTTTGACTTTGAAAAGTTAAGCATATATGGAATCGCACCCGAGGAGTTTGCAACCTTGTTTCTACCGATTTGTCAAAGTGGTCGAATCGACAAATGGATCACATTCCACGGATTTTACGACATTGCCTACGTAATGAAGCTTTTGAATGTCAACCCCATGCCGATCTCGATGGTGATATTCGCAATCACGGCTCAGCTATTATTGGGAACGATCATTGATCTTAAACACATGGCTAGTTATTGTCATGGTTTGTTTAATGGCGATTTAGGGCTAAAAAGGTTGGCGAAATTGCTCGGCGTTAGTCGAGTAGGTATTGCACATTTTGCTGGTTCGGATAGTTTGCTCACAGCTTCAGTTTATGCCAAGATGAAAATGATGTTCATGCTTCAACCAGAGCAATGTGACGGTTTCTTATACGGATTGCCTCATCGGATTTTTCGATCTTCTCGACCGGCTTTGAAGATTGTCAATCCATCTCCAGTGACTCTAAAGTGTTCTTTGTTGCCTTTTAGATCATCACAGAACGATTCTTTAATGGTCTCCAAAAATACAAACTTGGTTGTATAG

Coding sequence (CDS)

ATGGAAATTAATCAATCAATGTTGATGAATTCAAATTCAAGCAATCGAGAGGTTTGGTCTTACAACCTTTGTTACGAGTTAGAACTTATGAAGGAATATTTGATAGAGTTTCCTATAGTTGCCATAGATACTGAGTTCCCGGAGTTTTACGAGTGTCTTCGATTCAATGTCGACCGGCTGAGCATTCTTCAACTCGGTCTCACACTCACCGACCACCAAGGAAACATTGGCATGACTTGGGAGTTCAATTTCCAAGACTACGATATAATATCTGACATGGAAGGAGTAACGTCACTTGATTCGTTTCTCAAGAATAAGGGGTTTGACTTTGAAAAGTTAAGCATATATGGAATCGCACCCGAGGAGTTTGCAACCTTGTTTCTACCGATTTGTCAAAGTGGTCGAATCGACAAATGGATCACATTCCACGGATTTTACGACATTGCCTACGTAATGAAGCTTTTGAATGTCAACCCCATGCCGATCTCGATGGTGATATTCGCAATCACGGCTCAGCTATTATTGGGAACGATCATTGATCTTAAACACATGGCTAGTTATTGTCATGGTTTGTTTAATGGCGATTTAGGGCTAAAAAGGTTGGCGAAATTGCTCGGCGTTAGTCGAGTAGGTATTGCACATTTTGCTGGTTCGGATAGTTTGCTCACAGCTTCAGTTTATGCCAAGATGAAAATGATGTTCATGCTTCAACCAGAGCAATGTGACGGTTTCTTATACGGATTGCCTCATCGGATTTTTCGATCTTCTCGACCGGCTTTGAAGATTGTCAATCCATCTCCAGTGACTCTAAAGTGTTCTTTGTTGCCTTTTAGATCATCACAGAACGATTCTTTAATGGTCTCCAAAAATACAAACTTGGTTGTATAG

Protein sequence

MEINQSMLMNSNSSNREVWSYNLCYELELMKEYLIEFPIVAIDTEFPEFYECLRFNVDRLSILQLGLTLTDHQGNIGMTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKLSIYGIAPEEFATLFLPICQSGRIDKWITFHGFYDIAYVMKLLNVNPMPISMVIFAITAQLLLGTIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAKMKMMFMLQPEQCDGFLYGLPHRIFRSSRPALKIVNPSPVTLKCSLLPFRSSQNDSLMVSKNTNLVV

Homology

[Close]

BLAST of Sed0023596 vs. NCBI nr
Match: XP_022154798.1 (probable CCR4-associated factor 1 homolog 6 [Momordica charantia])

HSP 1 Score: 359.4 bits (921), Expect = 3.0e-95
Identity = 187/304 (61.51%), Postives = 218/304 (71.71%), Query Frame = 0


Query: 15  NREVWSYNLCYELELMKEYLIEFPIVAIDTEFP--------------------------- 74
           NREVWSYNL  ELE++ EYL EFPIVAIDTEFP                           
Sbjct: 18  NREVWSYNLHKELEILNEYLPEFPIVAIDTEFPGIGLLKDNRIYFLSLAGKYFYARKLDD 77

Query: 75  ---------------EFYECLRFNVDRLSILQLGLTLTDHQGNIGMTWEFNFQDYDIISD 134
                          EFY+CLRFNV+RL+ILQLGLTL +  GN+ MTWEFNF+D+D ISD
Sbjct: 78  EPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLANQNGNVAMTWEFNFRDFDHISD 137

Query: 135 MEGVTSLDSFLKNKGFDFEKLSIYGIAPEEFATLFLPICQSGRIDKWITFHGFYDIAYVM 194
           MEGV+SLDSFLKNKGFDF KL   GIA E+F TLFLPIC+SGRI++WITFHGFYDIAY++
Sbjct: 138 MEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLL 197

Query: 195 KLLNVNPMPISMVIFAITAQLLLGTIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSRVGI 254
           KLL +  +PISM  FA TAQ LLGT+ DLKHM  YC GL +GDLGLK+LAKLL V R+GI
Sbjct: 198 KLLKIKYIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGI 257

Query: 255 AHFAGSDSLLTASVYAKMKMMFMLQPEQCDGFLYGLPHRIFRSSRPALKIVNPSPVTLKC 277
           AHFAGSDSLLTA+VY KMK MF +  EQ +GFLYGLPHRI ++ +P +KIV+PS +T   
Sbjct: 258 AHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRI-QAFQPIVKIVDPSAMTPPP 317

[Close]

BLAST of Sed0023596 vs. NCBI nr
Match: XP_022146384.1 (putative CCR4-associated factor 1 homolog 8 [Momordica charantia])

HSP 1 Score: 348.2 bits (892), Expect = 6.9e-92
Identity = 179/285 (62.81%), Postives = 210/285 (73.68%), Query Frame = 0


Query: 15  NREVWSYNLCYELELMKEYLIEFPIVAIDTEFP-------------EFYECLRFNVDRLS 74
           NREVWS NL  ELEL+ EYL EFP+V ID EFP             EFY CLRFNV+RL+
Sbjct: 37  NREVWSLNLREELELLNEYLPEFPVVVIDMEFPGFLWCTPKGISEEEFYHCLRFNVNRLN 96

Query: 75  ILQLGLTLTDHQGNIGMTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKLSIYGIAPE 134
           ILQLGLTL D +GNI MTWEFNF+D+D +SDME V+SLDSFLKNKGFDF KL  YGIA E
Sbjct: 97  ILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFYKLKKYGIAQE 156

Query: 135 EFATLFLPICQSGRIDKWITFHGFYDIAYVMKLLNVNPMPISMVIFAITAQLLLGTIIDL 194
           +F TLFLPIC+SG+I +WITFHGFYDI Y++KLL +  +PISM  FA TAQ LLGT+ DL
Sbjct: 157 DFTTLFLPICRSGQIKRWITFHGFYDITYLLKLLKIKSIPISMATFATTAQHLLGTVSDL 216

Query: 195 KHMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAKMKMMFMLQPEQC 254
           KHMA YC GL +G+LGLK+LAKLL V R+  AHFA SD+L T SVY KMK +F L  EQC
Sbjct: 217 KHMARYCDGLLDGNLGLKKLAKLLDVKRIDNAHFACSDNLFTTSVYTKMKQIFKLPLEQC 276

Query: 255 DGFLYGLPHRIFRSSRPALKIVNPS------PVTLKCSLLPFRSS 281
           +GFLYGLP+ I    +   KI++PS      P+  K S+L F SS
Sbjct: 277 EGFLYGLPYPI-NGFQSVAKIIDPSTMTPPPPLPSKFSILSFCSS 320

[Close]

BLAST of Sed0023596 vs. NCBI nr
Match: XP_022928830.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 343.6 bits (880), Expect = 1.7e-90
Identity = 176/267 (65.92%), Postives = 208/267 (77.90%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFP-------------EFYECLRFNVDRLSI 75
           REVWS+NL  E+ELMK YL EFPIVAIDTEFP             EFY+CL+FNV+RLSI
Sbjct: 17  REVWSHNLLEEIELMKHYLSEFPIVAIDTEFPGFLRWTPKGVSDEEFYQCLQFNVNRLSI 76

Query: 76  LQLGLTLTDHQGNIGMTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKLSIYGIAPEE 135
           LQLGLTLTD  G IGMTWEFNFQD+D IS+MEGV SLDSFLKNKGF+F KL   GIAP+E
Sbjct: 77  LQLGLTLTDDNGKIGMTWEFNFQDFDQISNMEGVYSLDSFLKNKGFNFNKLRSCGIAPQE 136

Query: 136 FATLFLPICQSGRIDKWITFHGFYDIAYVMKLLNVNPMPISMVIFAITAQLLLGTIIDLK 195
           F+  F P+ +SGRI KWITFHG YDIAY+MK  N+  MP SM +FA+ A  LLGT+ DLK
Sbjct: 137 FSRQFKPVIRSGRIQKWITFHGLYDIAYLMKFNNIISMPTSMSMFAMIAAHLLGTVTDLK 196

Query: 196 HMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAKMKMMFMLQPEQCD 255
           HMA Y   LFNG+LGLK+LAKLL ++RVG AHFAGSDSLLTASVYAKMK++  ++P+  +
Sbjct: 197 HMARYSDYLFNGNLGLKKLAKLLQINRVGTAHFAGSDSLLTASVYAKMKVIMKVEPKIHE 256

Query: 256 GFLYGLPHRIFRSSRPALKIVNPSPVT 270
           GFLYGLP+ I +  RP + IV+PS +T
Sbjct: 257 GFLYGLPYPI-QGYRPPVVIVDPSKLT 282

[Close]

BLAST of Sed0023596 vs. NCBI nr
Match: XP_023550519.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.9 bits (860), Expect = 3.6e-88
Identity = 173/267 (64.79%), Postives = 204/267 (76.40%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFP-------------EFYECLRFNVDRLSI 75
           REVWSYNL  E+ELMK YL EFPIVA+DTEFP             EFY+CL+FNV+RLSI
Sbjct: 15  REVWSYNLLEEIELMKHYLSEFPIVAMDTEFPGFLRWTPKGVSDEEFYQCLQFNVNRLSI 74

Query: 76  LQLGLTLTDHQGNIGMTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKLSIYGIAPEE 135
           LQLGLTL D  G IGMTWEFNF+D+D IS+MEGV SLDSFLKNKGF+F KL   GIAPEE
Sbjct: 75  LQLGLTLIDENGKIGMTWEFNFKDFDKISNMEGVYSLDSFLKNKGFNFNKLRSCGIAPEE 134

Query: 136 FATLFLPICQSGRIDKWITFHGFYDIAYVMKLLNVNPMPISMVIFAITAQLLLGTIIDLK 195
           F+  F P+ +S RI +WITFHG YDIAY+MK  N+  MP SM +FAI A  LLGT+ DLK
Sbjct: 135 FSRQFNPVIRSRRIQRWITFHGLYDIAYLMKFNNIISMPTSMSMFAIIAAHLLGTVTDLK 194

Query: 196 HMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAKMKMMFMLQPEQCD 255
           HMA Y   LFNG+LGLK+LAKLL ++R+G AHFAGSDSLLTASVYAKMK +  ++P+  +
Sbjct: 195 HMARYSDYLFNGNLGLKKLAKLLQINRIGTAHFAGSDSLLTASVYAKMKAIMKVEPKIHE 254

Query: 256 GFLYGLPHRIFRSSRPALKIVNPSPVT 270
           GFLYGLP+ I    RP + IV+PS +T
Sbjct: 255 GFLYGLPYPIQGYRRPVV-IVDPSKLT 280

[Close]

BLAST of Sed0023596 vs. NCBI nr
Match: XP_022963785.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 332.4 bits (851), Expect = 3.9e-87
Identity = 173/267 (64.79%), Postives = 206/267 (77.15%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFP-------------EFYECLRFNVDRLSI 75
           R+VWS+NL  E+EL+++ L EFPIVA+DTEFP             EFYECL+FNV+RLSI
Sbjct: 14  RDVWSHNLLEEIELIQQCLSEFPIVAMDTEFPGFLRWTPKGVSDEEFYECLQFNVNRLSI 73

Query: 76  LQLGLTLTDHQGNIGMTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKLSIYGIAPEE 135
           LQLGLTLT+  G IGMTWEFNF+D+D IS+MEGV SLDSFLKNKGF+F  L  YGIAPEE
Sbjct: 74  LQLGLTLTNDNGKIGMTWEFNFKDFDKISNMEGVYSLDSFLKNKGFNFNTLRSYGIAPEE 133

Query: 136 FATLFLPICQSGRIDKWITFHGFYDIAYVMKLLNVNPMPISMVIFAITAQLLLGTIIDLK 195
           F   F PI +SGRI +WITFHG YDIAY+MKL N+  MP SM IFAITA  LLGT+ DLK
Sbjct: 134 FGRQFNPILRSGRIHRWITFHGLYDIAYLMKLTNITCMPTSMSIFAITAAHLLGTVTDLK 193

Query: 196 HMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAKMKMMFMLQPEQCD 255
           HMA   + LFNG+LGLK+LAKLL V+R G AHFAGSDSLLTASVYAKMK++  ++ +  +
Sbjct: 194 HMARCSNYLFNGNLGLKKLAKLLQVNRTGTAHFAGSDSLLTASVYAKMKIIMKVEQKIDE 253

Query: 256 GFLYGLPHRIFRSSRPALKIVNPSPVT 270
           GFLYGLP+ I    RP + IV+PS +T
Sbjct: 254 GFLYGLPYPIQGYRRPVV-IVDPSKLT 279

[Close]

BLAST of Sed0023596 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.9e-39
Identity = 99/260 (38.08%), Postives = 146/260 (56.15%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFPEF---------------YECLRFNVDRL 75
           REVW+ NL  E++L+++ + +FP VA+DTEFP                 YE L+ NV+ L
Sbjct: 13  REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNIL 72

Query: 76  SILQLGLTLTDHQGNIG-------MTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKL 135
            ++QLGLT ++ QGN+          W+FNF+++D+ SD+  + S++  LK  G D  K 
Sbjct: 73  KMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIE-LLKQSGIDLAKN 132

Query: 136 SIYGIAPEEFATLFLPICQSGRI----DKWITFHGFYDIAYVMKLLNVNPMPISMVIFAI 195
           ++ GI  + FA L +    SG +      W+TFH  YD  Y++KLL    +P S   F  
Sbjct: 133 TLDGIDSKRFAELLM---SSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFK 192

Query: 196 TAQLLLGTIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAK 249
              +   T+ D+KH+  +C+ L     GL +LA+LL V RVGI H AGSDSLLT+  + K
Sbjct: 193 LINVYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRK 252

[Close]

BLAST of Sed0023596 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-38
Identity = 99/260 (38.08%), Postives = 140/260 (53.85%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFPEF---------------YECLRFNVDRL 75
           REVW YNL  E  L++E + +F  +A+DTEFP                 Y  L+ NVD L
Sbjct: 13  REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLL 72

Query: 76  SILQLGLTLTDHQGNIG-------MTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKL 135
            ++Q+GLT +D  GN+          W+FNF++++I  D+    S++  L+  G DF+K 
Sbjct: 73  KLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIE-LLRQCGIDFKKN 132

Query: 136 SIYGIAPEEFATLFLPICQSGRI----DKWITFHGFYDIAYVMKLLNVNPMPISMVIFAI 195
              GI    F  L +    SG +      W+TFHG YD  Y++KLL    +P+    F  
Sbjct: 133 IEKGIDVVRFGELMM---SSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFK 192

Query: 196 TAQLLLGTIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAK 249
              +   T+ D+KH+ ++C+GLF    GL RLA+L+GV RVGI H AGSDSLLT   + K
Sbjct: 193 LLYVYFPTVYDIKHLMTFCNGLFG---GLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 252

[Close]

BLAST of Sed0023596 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-38
Identity = 99/263 (37.64%), Postives = 146/263 (55.51%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFP--------------EFYECLRFNVDRLS 75
           REVW+ NL  E EL+ E + ++P +++DTEFP              + Y  L+ NVD LS
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALS 79

Query: 76  ILQLGLTLTDHQGNI---------GMTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEK 135
           ++Q+GLTL+D  GN+         G  WEFNF+D+D+  D     S++  L+ +G DFE+
Sbjct: 80  LIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIE-LLRRQGIDFER 139

Query: 136 LSIYGIAPEEFATLFLP---ICQSGRIDKWITFHGFYDIAYVMKLLNVNPMPISMVIFAI 195
               G+  E FA L +    +C       W+TFH  YD  Y+MK+L    +P ++  F  
Sbjct: 140 NCRDGVESERFAELMMSSGLVCNEE--VSWVTFHSAYDFGYLMKILTRRELPGALGEFKR 199

Query: 196 TAQLLLG-TIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSR-VGIAHFAGSDSLLTASVY 249
             ++L G  + D+KHM  +C     G  GL R+A+ L V+R VG  H AGSDSLLT   +
Sbjct: 200 VMRVLFGERVYDVKHMMKFCERRLFG--GLDRVARTLEVNRAVGKCHQAGSDSLLTWHAF 259

[Close]

BLAST of Sed0023596 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 3.5e-38
Identity = 97/261 (37.16%), Postives = 144/261 (55.17%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFPEF---------------YECLRFNVDRL 75
           REVW+ NL  E+ L++E + +FP VA+DTEFP                 YE L+ NV+ L
Sbjct: 13  REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNIL 72

Query: 76  SILQLGLTLTDHQGNIG--------MTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEK 135
            ++QLGLT +D +GN+           W+FNF+++D+ SD+    S++  L+  G DF K
Sbjct: 73  KMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE-LLRQSGIDFVK 132

Query: 136 LSIYGIAPEEFATLFLPICQSGRI----DKWITFHGFYDIAYVMKLLNVNPMPISMVIFA 195
            + +GI  + FA L +    SG +      W+TFH  YD  Y++KLL    +P +   F 
Sbjct: 133 NNEFGIDSKRFAELLM---SSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFF 192

Query: 196 ITAQLLLGTIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYA 249
               +    + D+KH+  +C+ L     GL +LA+LL V RVGI H AGSDSLLT+  + 
Sbjct: 193 EMISVYFPRVYDIKHLMKFCNSLHG---GLNKLAELLDVERVGICHQAGSDSLLTSCTFR 252

[Close]

BLAST of Sed0023596 vs. ExPASy Swiss-Prot
Match: Q9S9P2 (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-37
Identity = 97/266 (36.47%), Postives = 150/266 (56.39%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFPEF---------------------YECLR 75
           REVW++NL  E+ L+++ + +FP VA+DTEFP                       Y+ L+
Sbjct: 17  REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLK 76

Query: 76  FNVDRLSILQLGLTLTDHQGNI-------GMTWEFNFQDYDIISDMEGVTSLDSFLKNKG 135
            NV+ L ++QLGLTL+D +GN+          W+FNF+++++ISDM  + S++  L+   
Sbjct: 77  ANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIE-LLRKSA 136

Query: 136 FDFEKLSIYGIAPEEFATLFLPICQSGRI--DK--WITFHGFYDIAYVMKLLNVNPMPIS 195
            D EK +  G+  + FA L +    SG +  DK  W+TFH  YD  Y++KLL+   +P  
Sbjct: 137 IDLEKNNECGVDAKRFAELLM---GSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEE 196

Query: 196 MVIFAITAQLLLGTIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLT 249
           +  F    +     + D+K++  +C  L+    GL+++A+LLGV RVGI+H AGSDSLLT
Sbjct: 197 ISDFFDQMEKFFPVVYDIKYLMGFCTNLYG---GLEKIAELLGVKRVGISHQAGSDSLLT 256

[Close]

BLAST of Sed0023596 vs. ExPASy TrEMBL
Match: A0A6J1DLA5 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111021965 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.5e-95
Identity = 187/304 (61.51%), Postives = 218/304 (71.71%), Query Frame = 0


Query: 15  NREVWSYNLCYELELMKEYLIEFPIVAIDTEFP--------------------------- 74
           NREVWSYNL  ELE++ EYL EFPIVAIDTEFP                           
Sbjct: 18  NREVWSYNLHKELEILNEYLPEFPIVAIDTEFPGIGLLKDNRIYFLSLAGKYFYARKLDD 77

Query: 75  ---------------EFYECLRFNVDRLSILQLGLTLTDHQGNIGMTWEFNFQDYDIISD 134
                          EFY+CLRFNV+RL+ILQLGLTL +  GN+ MTWEFNF+D+D ISD
Sbjct: 78  EPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLANQNGNVAMTWEFNFRDFDHISD 137

Query: 135 MEGVTSLDSFLKNKGFDFEKLSIYGIAPEEFATLFLPICQSGRIDKWITFHGFYDIAYVM 194
           MEGV+SLDSFLKNKGFDF KL   GIA E+F TLFLPIC+SGRI++WITFHGFYDIAY++
Sbjct: 138 MEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLL 197

Query: 195 KLLNVNPMPISMVIFAITAQLLLGTIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSRVGI 254
           KLL +  +PISM  FA TAQ LLGT+ DLKHM  YC GL +GDLGLK+LAKLL V R+GI
Sbjct: 198 KLLKIKYIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGI 257

Query: 255 AHFAGSDSLLTASVYAKMKMMFMLQPEQCDGFLYGLPHRIFRSSRPALKIVNPSPVTLKC 277
           AHFAGSDSLLTA+VY KMK MF +  EQ +GFLYGLPHRI ++ +P +KIV+PS +T   
Sbjct: 258 AHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRI-QAFQPIVKIVDPSAMTPPP 317

[Close]

BLAST of Sed0023596 vs. ExPASy TrEMBL
Match: A0A6J1CXZ5 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015612 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 3.4e-92
Identity = 179/285 (62.81%), Postives = 210/285 (73.68%), Query Frame = 0


Query: 15  NREVWSYNLCYELELMKEYLIEFPIVAIDTEFP-------------EFYECLRFNVDRLS 74
           NREVWS NL  ELEL+ EYL EFP+V ID EFP             EFY CLRFNV+RL+
Sbjct: 37  NREVWSLNLREELELLNEYLPEFPVVVIDMEFPGFLWCTPKGISEEEFYHCLRFNVNRLN 96

Query: 75  ILQLGLTLTDHQGNIGMTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKLSIYGIAPE 134
           ILQLGLTL D +GNI MTWEFNF+D+D +SDME V+SLDSFLKNKGFDF KL  YGIA E
Sbjct: 97  ILQLGLTLADQKGNIAMTWEFNFRDFDHVSDMEDVSSLDSFLKNKGFDFYKLKKYGIAQE 156

Query: 135 EFATLFLPICQSGRIDKWITFHGFYDIAYVMKLLNVNPMPISMVIFAITAQLLLGTIIDL 194
           +F TLFLPIC+SG+I +WITFHGFYDI Y++KLL +  +PISM  FA TAQ LLGT+ DL
Sbjct: 157 DFTTLFLPICRSGQIKRWITFHGFYDITYLLKLLKIKSIPISMATFATTAQHLLGTVSDL 216

Query: 195 KHMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAKMKMMFMLQPEQC 254
           KHMA YC GL +G+LGLK+LAKLL V R+  AHFA SD+L T SVY KMK +F L  EQC
Sbjct: 217 KHMARYCDGLLDGNLGLKKLAKLLDVKRIDNAHFACSDNLFTTSVYTKMKQIFKLPLEQC 276

Query: 255 DGFLYGLPHRIFRSSRPALKIVNPS------PVTLKCSLLPFRSS 281
           +GFLYGLP+ I    +   KI++PS      P+  K S+L F SS
Sbjct: 277 EGFLYGLPYPI-NGFQSVAKIIDPSTMTPPPPLPSKFSILSFCSS 320

[Close]

BLAST of Sed0023596 vs. ExPASy TrEMBL
Match: A0A6J1ESM7 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111435626 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 8.3e-91
Identity = 176/267 (65.92%), Postives = 208/267 (77.90%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFP-------------EFYECLRFNVDRLSI 75
           REVWS+NL  E+ELMK YL EFPIVAIDTEFP             EFY+CL+FNV+RLSI
Sbjct: 17  REVWSHNLLEEIELMKHYLSEFPIVAIDTEFPGFLRWTPKGVSDEEFYQCLQFNVNRLSI 76

Query: 76  LQLGLTLTDHQGNIGMTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKLSIYGIAPEE 135
           LQLGLTLTD  G IGMTWEFNFQD+D IS+MEGV SLDSFLKNKGF+F KL   GIAP+E
Sbjct: 77  LQLGLTLTDDNGKIGMTWEFNFQDFDQISNMEGVYSLDSFLKNKGFNFNKLRSCGIAPQE 136

Query: 136 FATLFLPICQSGRIDKWITFHGFYDIAYVMKLLNVNPMPISMVIFAITAQLLLGTIIDLK 195
           F+  F P+ +SGRI KWITFHG YDIAY+MK  N+  MP SM +FA+ A  LLGT+ DLK
Sbjct: 137 FSRQFKPVIRSGRIQKWITFHGLYDIAYLMKFNNIISMPTSMSMFAMIAAHLLGTVTDLK 196

Query: 196 HMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAKMKMMFMLQPEQCD 255
           HMA Y   LFNG+LGLK+LAKLL ++RVG AHFAGSDSLLTASVYAKMK++  ++P+  +
Sbjct: 197 HMARYSDYLFNGNLGLKKLAKLLQINRVGTAHFAGSDSLLTASVYAKMKVIMKVEPKIHE 256

Query: 256 GFLYGLPHRIFRSSRPALKIVNPSPVT 270
           GFLYGLP+ I +  RP + IV+PS +T
Sbjct: 257 GFLYGLPYPI-QGYRPPVVIVDPSKLT 282

[Close]

BLAST of Sed0023596 vs. ExPASy TrEMBL
Match: A0A6J1HL76 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111463977 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.9e-87
Identity = 174/267 (65.17%), Postives = 205/267 (76.78%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFP-------------EFYECLRFNVDRLSI 75
           R+VWS+NL  E+EL+K+ L EFPIVAIDTEFP             EFYECL+FNV+RLSI
Sbjct: 17  RDVWSHNLLEEIELIKQCLSEFPIVAIDTEFPGFLRWTPKGVSDEEFYECLQFNVNRLSI 76

Query: 76  LQLGLTLTDHQGNIGMTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKLSIYGIAPEE 135
           LQLGLTLT+  G IGMTWEFNF+D+D IS+MEGV SLDSFLKNKGF+F  L  YGIAPEE
Sbjct: 77  LQLGLTLTNDNGKIGMTWEFNFRDFDKISNMEGVYSLDSFLKNKGFNFNTLRSYGIAPEE 136

Query: 136 FATLFLPICQSGRIDKWITFHGFYDIAYVMKLLNVNPMPISMVIFAITAQLLLGTIIDLK 195
           F T F PI +SGRI +WITFHG YDIAY+MK  N+  MP SM IFAITA  +LGT+ DLK
Sbjct: 137 FGTQFSPILRSGRIHRWITFHGLYDIAYLMKFTNIRCMPTSMSIFAITAAHILGTVTDLK 196

Query: 196 HMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAKMKMMFMLQPEQCD 255
           HMA Y   L +G+LGLK+LAKLL V+R G AHFAGSDSLLTASVYAKMK++  ++P   +
Sbjct: 197 HMAWY--SLLDGNLGLKKLAKLLQVNRTGTAHFAGSDSLLTASVYAKMKIIMKVEPNIHE 256

Query: 256 GFLYGLPHRIFRSSRPALKIVNPSPVT 270
           GFLYGLP+ I    RP + IV+PS +T
Sbjct: 257 GFLYGLPYPIQGYRRPVV-IVDPSKLT 280

[Close]

BLAST of Sed0023596 vs. ExPASy TrEMBL
Match: A0A6J1HIZ7 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111463978 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.9e-87
Identity = 173/267 (64.79%), Postives = 206/267 (77.15%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFP-------------EFYECLRFNVDRLSI 75
           R+VWS+NL  E+EL+++ L EFPIVA+DTEFP             EFYECL+FNV+RLSI
Sbjct: 14  RDVWSHNLLEEIELIQQCLSEFPIVAMDTEFPGFLRWTPKGVSDEEFYECLQFNVNRLSI 73

Query: 76  LQLGLTLTDHQGNIGMTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKLSIYGIAPEE 135
           LQLGLTLT+  G IGMTWEFNF+D+D IS+MEGV SLDSFLKNKGF+F  L  YGIAPEE
Sbjct: 74  LQLGLTLTNDNGKIGMTWEFNFKDFDKISNMEGVYSLDSFLKNKGFNFNTLRSYGIAPEE 133

Query: 136 FATLFLPICQSGRIDKWITFHGFYDIAYVMKLLNVNPMPISMVIFAITAQLLLGTIIDLK 195
           F   F PI +SGRI +WITFHG YDIAY+MKL N+  MP SM IFAITA  LLGT+ DLK
Sbjct: 134 FGRQFNPILRSGRIHRWITFHGLYDIAYLMKLTNITCMPTSMSIFAITAAHLLGTVTDLK 193

Query: 196 HMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAKMKMMFMLQPEQCD 255
           HMA   + LFNG+LGLK+LAKLL V+R G AHFAGSDSLLTASVYAKMK++  ++ +  +
Sbjct: 194 HMARCSNYLFNGNLGLKKLAKLLQVNRTGTAHFAGSDSLLTASVYAKMKIIMKVEQKIDE 253

Query: 256 GFLYGLPHRIFRSSRPALKIVNPSPVT 270
           GFLYGLP+ I    RP + IV+PS +T
Sbjct: 254 GFLYGLPYPIQGYRRPVV-IVDPSKLT 279

[Close]

BLAST of Sed0023596 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-40
Identity = 99/260 (38.08%), Postives = 146/260 (56.15%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFPEF---------------YECLRFNVDRL 75
           REVW+ NL  E++L+++ + +FP VA+DTEFP                 YE L+ NV+ L
Sbjct: 13  REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNIL 72

Query: 76  SILQLGLTLTDHQGNIG-------MTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKL 135
            ++QLGLT ++ QGN+          W+FNF+++D+ SD+  + S++  LK  G D  K 
Sbjct: 73  KMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIE-LLKQSGIDLAKN 132

Query: 136 SIYGIAPEEFATLFLPICQSGRI----DKWITFHGFYDIAYVMKLLNVNPMPISMVIFAI 195
           ++ GI  + FA L +    SG +      W+TFH  YD  Y++KLL    +P S   F  
Sbjct: 133 TLDGIDSKRFAELLM---SSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFK 192

Query: 196 TAQLLLGTIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAK 249
              +   T+ D+KH+  +C+ L     GL +LA+LL V RVGI H AGSDSLLT+  + K
Sbjct: 193 LINVYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRK 252

[Close]

BLAST of Sed0023596 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-40
Identity = 99/260 (38.08%), Postives = 146/260 (56.15%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFPEF---------------YECLRFNVDRL 75
           REVW+ NL  E++L+++ + +FP VA+DTEFP                 YE L+ NV+ L
Sbjct: 13  REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNIL 72

Query: 76  SILQLGLTLTDHQGNIG-------MTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKL 135
            ++QLGLT ++ QGN+          W+FNF+++D+ SD+  + S++  LK  G D  K 
Sbjct: 73  KMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIE-LLKQSGIDLAKN 132

Query: 136 SIYGIAPEEFATLFLPICQSGRI----DKWITFHGFYDIAYVMKLLNVNPMPISMVIFAI 195
           ++ GI  + FA L +    SG +      W+TFH  YD  Y++KLL    +P S   F  
Sbjct: 133 TLDGIDSKRFAELLM---SSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFK 192

Query: 196 TAQLLLGTIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAK 249
              +   T+ D+KH+  +C+ L     GL +LA+LL V RVGI H AGSDSLLT+  + K
Sbjct: 193 LINVYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRK 252

[Close]

BLAST of Sed0023596 vs. TAIR 10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-40
Identity = 99/260 (38.08%), Postives = 146/260 (56.15%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFPEF---------------YECLRFNVDRL 75
           REVW+ NL  E++L+++ + +FP VA+DTEFP                 YE L+ NV+ L
Sbjct: 13  REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNIL 72

Query: 76  SILQLGLTLTDHQGNIG-------MTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKL 135
            ++QLGLT ++ QGN+          W+FNF+++D+ SD+  + S++  LK  G D  K 
Sbjct: 73  KMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIE-LLKQSGIDLAKN 132

Query: 136 SIYGIAPEEFATLFLPICQSGRI----DKWITFHGFYDIAYVMKLLNVNPMPISMVIFAI 195
           ++ GI  + FA L +    SG +      W+TFH  YD  Y++KLL    +P S   F  
Sbjct: 133 TLDGIDSKRFAELLM---SSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFK 192

Query: 196 TAQLLLGTIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAK 249
              +   T+ D+KH+  +C+ L     GL +LA+LL V RVGI H AGSDSLLT+  + K
Sbjct: 193 LINVYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRK 252

[Close]

BLAST of Sed0023596 vs. TAIR 10
Match: AT5G10960.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 161.8 bits (408), Expect = 8.6e-40
Identity = 99/260 (38.08%), Postives = 140/260 (53.85%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFPEF---------------YECLRFNVDRL 75
           REVW YNL  E  L++E + +F  +A+DTEFP                 Y  L+ NVD L
Sbjct: 13  REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLL 72

Query: 76  SILQLGLTLTDHQGNIG-------MTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEKL 135
            ++Q+GLT +D  GN+          W+FNF++++I  D+    S++  L+  G DF+K 
Sbjct: 73  KLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIE-LLRQCGIDFKKN 132

Query: 136 SIYGIAPEEFATLFLPICQSGRI----DKWITFHGFYDIAYVMKLLNVNPMPISMVIFAI 195
              GI    F  L +    SG +      W+TFHG YD  Y++KLL    +P+    F  
Sbjct: 133 IEKGIDVVRFGELMM---SSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFK 192

Query: 196 TAQLLLGTIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSRVGIAHFAGSDSLLTASVYAK 249
              +   T+ D+KH+ ++C+GLF    GL RLA+L+GV RVGI H AGSDSLLT   + K
Sbjct: 193 LLYVYFPTVYDIKHLMTFCNGLFG---GLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 252

[Close]

BLAST of Sed0023596 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 1.1e-39
Identity = 99/263 (37.64%), Postives = 146/263 (55.51%), Query Frame = 0


Query: 16  REVWSYNLCYELELMKEYLIEFPIVAIDTEFP--------------EFYECLRFNVDRLS 75
           REVW+ NL  E EL+ E + ++P +++DTEFP              + Y  L+ NVD LS
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALS 79

Query: 76  ILQLGLTLTDHQGNI---------GMTWEFNFQDYDIISDMEGVTSLDSFLKNKGFDFEK 135
           ++Q+GLTL+D  GN+         G  WEFNF+D+D+  D     S++  L+ +G DFE+
Sbjct: 80  LIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIE-LLRRQGIDFER 139

Query: 136 LSIYGIAPEEFATLFLP---ICQSGRIDKWITFHGFYDIAYVMKLLNVNPMPISMVIFAI 195
               G+  E FA L +    +C       W+TFH  YD  Y+MK+L    +P ++  F  
Sbjct: 140 NCRDGVESERFAELMMSSGLVCNEE--VSWVTFHSAYDFGYLMKILTRRELPGALGEFKR 199

Query: 196 TAQLLLG-TIIDLKHMASYCHGLFNGDLGLKRLAKLLGVSR-VGIAHFAGSDSLLTASVY 249
             ++L G  + D+KHM  +C     G  GL R+A+ L V+R VG  H AGSDSLLT   +
Sbjct: 200 VMRVLFGERVYDVKHMMKFCERRLFG--GLDRVARTLEVNRAVGKCHQAGSDSLLTWHAF 259

The following BLAST results are available for this feature:

BLAST of Sed0023596 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154798.1	3.0e-95	61.51	probable CCR4-associated factor 1 homolog 6 [Momordica charantia]	[more]
XP_022146384.1	6.9e-92	62.81	putative CCR4-associated factor 1 homolog 8 [Momordica charantia]	[more]
XP_022928830.1	1.7e-90	65.92	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]
XP_023550519.1	3.6e-88	64.79	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]
XP_022963785.1	3.9e-87	64.79	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]

BLAST of Sed0023596 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAI2	1.9e-39	38.08	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	1.2e-38	38.08	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LXM2	1.6e-38	37.64	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SKZ2	3.5e-38	37.16	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9S9P2	1.3e-37	36.47	Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Sed0023596 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLA5	1.5e-95	61.51	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111021965 PE=...	[more]
A0A6J1CXZ5	3.4e-92	62.81	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015612 PE=...	[more]
A0A6J1ESM7	8.3e-91	65.92	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111435626 PE=3...	[more]
A0A6J1HL76	1.9e-87	65.17	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111463977 PE=3...	[more]
A0A6J1HIZ7	1.9e-87	64.79	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111463978 PE=3...	[more]

BLAST of Sed0023596 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80780.1	1.3e-40	38.08	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	1.3e-40	38.08	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	1.3e-40	38.08	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G10960.1	8.6e-40	38.08	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44260.1	1.1e-39	37.64	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 4..251 e-value: 6.7E-59 score: 201.1
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 15..260
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 15..260
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 13..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023596.1	Sed0023596.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043229	intracellular organelle
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity