Sed0023585 (gene) Chayote v1

Overview


Name	Sed0023585
Type	gene
Organism	Sechium edule (Chayote v1)
Description	rRNA-processing protein FCF1-like protein
Location	LG06: 36705150 .. 36707823 (-)
RNA-Seq Expression	Sed0023585
Synteny	Sed0023585

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGATGGCAACCTCGAAAGCAATTAAGAAGTATGCCTAAATTCCATCAATTAACTTTTATCCTACTCTTTTTTAAAAAAACTAATTTCTTGCTCATGTTTTTTTTTTTAAATCTAGCTATAAAGAAGAGGTCTTGAATCCAAAGAGAAAAGATCCTACCAAGGAAAATCTCGAAGAAATATGTAAGGATCTTTTTGTTTTTGTTTTTAATTTCCAAAGAGTTTTGTATGTTACTTTTGGAGATGTTTTGTTTATTTTGTACGATGATTTCAGTCCATATGTTCCTTCAGCACTATTCTTCAAGTACAACACTGGCTTGGGGCCTCCTTATCGGGTTTTGGTAGATACAAGCTTCATCAATTTCTCCTGAAAAAACAAAGTGAGTGCTTTCACAAGTGATATGATATTATATTTTGTTATAATTGTTTAAATTGAATAGAGCACAATTGCAGCTAAAAGAGACTAAGAATAACAATAAAAATATACATATAGAAGAGATATAAGAGAAAGAAAGACACAATAATATTACGTGGAAAATCCATAAATAAATTAGGATTTGATAGAATAACTTTATTACAAAAATAAGAGTTACAAACCCTCCCTCTACAAAAAAAACAATAAACTTTCTTACAACGAGAAACACTCTCTATTTTTATCTCACAATGTGGGATGTCTTGGGATGATTTGGGATGGTTTGACAACAATGGCACCCACCTATTTATATTACTCATGAAATTGGGCTTCAAGTATCATCAAATTGTCCACATTTTTATTTGGTGATCAAGTAAATTATGTGACCATGATTTTGCCAACATTTCACTTTGGATAAGAATGTCTAGATATTTTTTTGACAAATTGAGGTTGATTTCTTTGAACCACTAGAATAAACCAAGTGAAGTGTAAAATCTTCTTTGGGTCTAAGCTCTGTTTATCCTATAATATTTAACATATATATTTATATGATATCATGTCTTATGAATATGTATGTTTATGGATGATTTATGCAAAATGTAAGTTGCATCAATATTTACAATATGAAACTTTAATTTGATAATTAAAAACATGATCACAAATCATTATCTATAAATGCGGACGGACATGGTTAATTATTTGGTGCTATCATGTTGTATAGGCACTATTTGTATAACAGATTGCGTGCGGGCTGAGCTTGAGAAATTACAGCTGAAGTATCGTGTTGCTCTCAGGTAAATTCGAGTTTCGTAATTTGTCGTTTTGAGAGATTAGAGAATATATAGTATCGCAGAATCCAAAGAGGGATATGAAATAACATATCTTTCTCCTAACTGATGCTAATGCATGTAAGTAAAATTTAACGTACTTAAGTTAAAGGGAAGATCTTAAGTATATAAAAAGGAGATAAGTTTATATAGGTGATAATATAAAACAAAATTATAAAAATTTATGCTTCAATTAGAATAATATTATATTAATGCGAAGATATCTGGCCTTACCCATTCTGCCCCCAATATTGGGCACTACATGGCTTCTCTTGGGCATTTTCCATTTTCTTTCTAGTGATTTTGTTAATACTATATATATCTTTTTCTTTCTTTCTTTCTTTTTAGATTACTACTCGATATTGTTTCCTTTTATTTTGTACTTGTTGGTATTAATTACTATTTTGTGGTTGAACAGAAATATCTAAGAACCCACGTTTCGAGAGATTACCATGTACTCATAAAGGAACATATGTTGATGATTGCTTTGTTGAAAGGGTGAAGCAGGTGAGAATTTGAGACTTTTTGTATTTGATTTTTTTTTTCTTTTTACTATTTCACTACTAGAAATAGCACATATCAATACTATAATTTAGAGTCATGAACACCTTCTATGACTAAAATTAGGAGTCGTTGTATCCGCTGTCACGAAAGGTTCGATTATGACACTATAGCAAATGTGTCATGGTAGAACTAGTTATGACACTATATTATAGTCATTGATGAATCACTAATGACACATATGCATGGTCATTAACAAAATAATAACAATAATTTATAAGTGTCATTGTAGAACCAGTTATGACATTTTTTTTATTGTAGAACCATTTATGACAATCCATAAAGGGTTTTGGAAAGAAATCGTAAACACTTGCCCCTCTTTTTGTTAAACCCTTTTGTTTTTCACTCCGTTTTTTTTTTGTTCGCTCAAAGACATTGAAGATATATAAATGCGTTATTCCAAGTTCGAACTTAGTTCTGAAAAAGCAAATTTTAATGACTCTAGTATATCGTTATAAATGACATAAAATATGATTTTTCTGATTTTCAGCAAAAAAAACGTGAATTGTGATCTTTTATGACTTTCACTTTTCTCAAGCAAAATGGTAAAAGAAGAGTGATATGGTAGGTCATATTTGTAGTAGTGTTTTTGTATATATATTTTAACCCGAGTCTTTGTTTGTATGCAGCATAAGTGTTATATTGTTGCTACTGGTGATAGAGATTTGAAGCGTAGGATTCGCAGGTAGGTATAATTAGACTATGATAATGTAGATTTTTAGATTTAGATGTAGTAACTTAGCCTACTTTATTTTGTTATAGATTCCTGGTGTACCAATCATGTACATAACTCGACATCAGTATTCAATTGAACGATTGCCTGAAGCAACAATTGGGGGAGGTATATATATATATATATATACTATATAG

mRNA sequence

ATGAAGAAGATGGCAACCTCGAAAGCAATTAAGAACTATAAAGAAGAGGTCTTGAATCCAAAGAGAAAAGATCCTACCAAGGAAAATCTCGAAGAAATATGTAAGGATCTTTTTGTTTTTGTTTTTAATTTCCAAAGAGTTTTTCCATATGTTCCTTCAGCACTATTCTTCAAGTACAACACTGGCTTGGGGCCTCCTTATCGGGTTTTGGTAGATACAAGCACTATTTGTATAACAGATTGCGTGCGGGCTGAGCTTGAGAAATTACAGCTGAAGTATCAAATATCTAAGAACCCACGTTTCGAGAGATTACCATGTACTCATAAAGGAACATATGTTGATGATTGCTTTGTTGAAAGGGTGAAGCAGATTCCTGGTGTACCAATCATGTACATAACTCGACATCAGTATTCAATTGAACGATTGCCTGAAGCAACAATTGGGGGAGGTATATATATATATATATATACTATATAG

Coding sequence (CDS)

ATGAAGAAGATGGCAACCTCGAAAGCAATTAAGAACTATAAAGAAGAGGTCTTGAATCCAAAGAGAAAAGATCCTACCAAGGAAAATCTCGAAGAAATATGTAAGGATCTTTTTGTTTTTGTTTTTAATTTCCAAAGAGTTTTTCCATATGTTCCTTCAGCACTATTCTTCAAGTACAACACTGGCTTGGGGCCTCCTTATCGGGTTTTGGTAGATACAAGCACTATTTGTATAACAGATTGCGTGCGGGCTGAGCTTGAGAAATTACAGCTGAAGTATCAAATATCTAAGAACCCACGTTTCGAGAGATTACCATGTACTCATAAAGGAACATATGTTGATGATTGCTTTGTTGAAAGGGTGAAGCAGATTCCTGGTGTACCAATCATGTACATAACTCGACATCAGTATTCAATTGAACGATTGCCTGAAGCAACAATTGGGGGAGGTATATATATATATATATATACTATATAG

Protein sequence

MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNTGLGPPYRVLVDTSTICITDCVRAELEKLQLKYQISKNPRFERLPCTHKGTYVDDCFVERVKQIPGVPIMYITRHQYSIERLPEATIGGGIYIYIYTI

Homology

[Close]

BLAST of Sed0023585 vs. NCBI nr
Match: PWA78492.1 (PIN domain-like family protein [Artemisia annua])

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-47
Identity = 106/173 (61.27%), Postives = 120/173 (69.36%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           MKK+ + KA+K +KEEVLNP +KD TK+NL               R  PYV S LFF YN
Sbjct: 13  MKKLVSHKAVKQHKEEVLNPNKKDLTKQNL--------------PRNVPYVSSVLFFTYN 72

Query: 61  TGLGPPYRVLVDTS-------------TICITDCVRAELEKLQLKY----QISKNPRFER 120
           T LGPPYRVLVDT+             T CITDCV AELEKL  KY    +I+K+PRFER
Sbjct: 73  TALGPPYRVLVDTNFINFSIQNKVSIGTPCITDCVMAELEKLGQKYRVALRIAKDPRFER 132

Query: 121 LPCTHKGTYVDDCFVERVKQIPGVPIMYITRHQYSIERLPEATIGGGIYIYIY 157
           LPCTHKGTY DDC VERV QIPGVPIMYIT+H+YSIERLPEAT+GGG +  IY
Sbjct: 133 LPCTHKGTYADDCIVERVTQIPGVPIMYITQHKYSIERLPEATMGGGRFFLIY 171

[Close]

BLAST of Sed0023585 vs. NCBI nr
Match: XP_004136642.1 (rRNA-processing protein FCF1 homolog [Cucumis sativus] >KGN59454.1 hypothetical protein Csa_002627 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 3.6e-47
Identity = 115/196 (58.67%), Postives = 121/196 (61.73%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           MKKM TSKAIKNYKEEVLNPKRKD TKENL               R  P VPSALFFKYN
Sbjct: 13  MKKMVTSKAIKNYKEEVLNPKRKDLTKENL--------------PRNVPNVPSALFFKYN 72

Query: 61  TGLGPPYRVLVDTS------------------------TICITDCVRAELEKLQLKY--- 120
           T LGPPYRVLVDT+                        T CITDCV AELE+L  KY   
Sbjct: 73  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 132

Query: 121 -QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYIT 150
            +I+K+PRFERLPCTHKGTY DDC VERV Q                   +PGVPIMYIT
Sbjct: 133 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYIT 192

[Close]

BLAST of Sed0023585 vs. NCBI nr
Match: TYK25530.1 (rRNA-processing protein FCF1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 4.8e-47
Identity = 115/197 (58.38%), Postives = 122/197 (61.93%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           MKKM TSKAIKNYK+EVLNPKRKD TKENL               R  P VPSALFFK+N
Sbjct: 13  MKKMVTSKAIKNYKQEVLNPKRKDLTKENL--------------PRNVPNVPSALFFKHN 72

Query: 61  TGLGPPYRVLVDTS------------------------TICITDCVRAELEKLQLKY--- 120
           T LGPPYRVLVDT+                        T CITDCV AELE+L  KY   
Sbjct: 73  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 132

Query: 121 -QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYIT 151
            +I+K+PRFERLPCTHKGTY DDC VERV Q                   IPGVPIMYIT
Sbjct: 133 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 192

[Close]

BLAST of Sed0023585 vs. NCBI nr
Match: XP_038903189.1 (rRNA-processing protein FCF1 homolog [Benincasa hispida])

HSP 1 Score: 198.0 bits (502), Expect = 6.2e-47
Identity = 115/196 (58.67%), Postives = 121/196 (61.73%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           MKKM TSKAIKNYKE+VLNPKRKD TKENL               R  P VPSALFFKYN
Sbjct: 13  MKKMVTSKAIKNYKEQVLNPKRKDLTKENL--------------PRNVPNVPSALFFKYN 72

Query: 61  TGLGPPYRVLVDTS------------------------TICITDCVRAELEKLQLKY--- 120
           T LGPPYRVLVDT+                        T CITDCV AELE+L  KY   
Sbjct: 73  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 132

Query: 121 -QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYIT 150
            +I+K+PRFERLPCTHKGTY DDC VERV Q                   IPGVPIMYIT
Sbjct: 133 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 192

[Close]

BLAST of Sed0023585 vs. NCBI nr
Match: KAA0053874.1 (rRNA-processing protein FCF1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-46
Identity = 114/198 (57.58%), Postives = 122/198 (61.62%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           MKK+ TSKAIKNYK+EVLNPKRKD TKENL               R  P VPSALFFK+N
Sbjct: 13  MKKLVTSKAIKNYKQEVLNPKRKDLTKENL--------------PRNVPNVPSALFFKHN 72

Query: 61  TGLGPPYRVLVDTS------------------------TICITDCVRAELEKLQLKY--- 120
           T LGPPYRVLVDT+                        T CITDCV AELE+L  KY   
Sbjct: 73  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 132

Query: 121 --QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYI 151
             +I+K+PRFERLPCTHKGTY DDC VERV Q                   IPGVPIMYI
Sbjct: 133 LSRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYI 192

[Close]

BLAST of Sed0023585 vs. ExPASy Swiss-Prot
Match: Q32PD0 (rRNA-processing protein FCF1 homolog OS=Bos taurus OX=9913 GN=FCF1 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.2e-30
Identity = 83/190 (43.68%), Postives = 104/190 (54.74%), Query Frame = 0


Query: 2   KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNT 61
           +K AT K + + +++ L  K KD  K   +E  KD        +R  P  PS LFF+YNT
Sbjct: 8   RKYATMKRMLSLRDQRL--KEKDRLKPKKKE-KKDPSALK---EREVPQHPSCLFFQYNT 67

Query: 62  GLGPPYRVLVDTSTI------------------------CITDCVRAELEKLQLKY---- 121
            LGPPY +LVDT+ I                        CITDCV AE+EKL  KY    
Sbjct: 68  QLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVAL 127

Query: 122 QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITR 145
           +I+K+PRFERLPCTHKGTY DDC V+RV Q                   IPGVPIMYI+ 
Sbjct: 128 RIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISN 187

[Close]

BLAST of Sed0023585 vs. ExPASy Swiss-Prot
Match: Q9Y324 (rRNA-processing protein FCF1 homolog OS=Homo sapiens OX=9606 GN=FCF1 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.2e-30
Identity = 83/190 (43.68%), Postives = 104/190 (54.74%), Query Frame = 0


Query: 2   KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNT 61
           +K AT K + + +++ L  K KD  K   +E  KD        +R  P  PS LFF+YNT
Sbjct: 8   RKYATMKRMLSLRDQRL--KEKDRLKPKKKE-KKDPSALK---EREVPQHPSCLFFQYNT 67

Query: 62  GLGPPYRVLVDTSTI------------------------CITDCVRAELEKLQLKY---- 121
            LGPPY +LVDT+ I                        CITDCV AE+EKL  KY    
Sbjct: 68  QLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVAL 127

Query: 122 QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITR 145
           +I+K+PRFERLPCTHKGTY DDC V+RV Q                   IPGVPIMYI+ 
Sbjct: 128 RIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISN 187

[Close]

BLAST of Sed0023585 vs. ExPASy Swiss-Prot
Match: Q5RFQ0 (rRNA-processing protein FCF1 homolog OS=Pongo abelii OX=9601 GN=FCF1 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.2e-30
Identity = 83/190 (43.68%), Postives = 104/190 (54.74%), Query Frame = 0


Query: 2   KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNT 61
           +K AT K + + +++ L  K KD  K   +E  KD        +R  P  PS LFF+YNT
Sbjct: 8   RKYATMKRMLSLRDQRL--KEKDRLKPKKKE-KKDPSALK---EREVPQHPSCLFFQYNT 67

Query: 62  GLGPPYRVLVDTSTI------------------------CITDCVRAELEKLQLKY---- 121
            LGPPY +LVDT+ I                        CITDCV AE+EKL  KY    
Sbjct: 68  QLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKYRVAL 127

Query: 122 QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITR 145
           +I+K+PRFERLPCTHKGTY DDC V+RV Q                   IPGVPIMYI+ 
Sbjct: 128 RIAKDPRFERLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYISN 187

[Close]

BLAST of Sed0023585 vs. ExPASy Swiss-Prot
Match: Q9CTH6 (rRNA-processing protein FCF1 homolog OS=Mus musculus OX=10090 GN=Fcf1 PE=2 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-29
Identity = 81/190 (42.63%), Postives = 104/190 (54.74%), Query Frame = 0


Query: 2   KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNT 61
           +K AT K + + ++E L  K KD  K   +E  KD        +R  P  PS LFF+YNT
Sbjct: 8   RKYATMKRMLSLRDERL--KEKDRLKPKKKE-KKDPSALK---EREVPQHPSCLFFQYNT 67

Query: 62  GLGPPYRVLVDTSTI------------------------CITDCVRAELEKLQLKY---- 121
            LGPPY +LVDT+ I                        CITDCV AE+EKL  K+    
Sbjct: 68  QLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCITDCVMAEIEKLGQKFRVAL 127

Query: 122 QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITR 145
           +I+K+PRF+RLPCTHKGTY DDC V+RV Q                   IPGVPIMY++ 
Sbjct: 128 RIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVATVDRDLKRRIRKIPGVPIMYLSN 187

[Close]

BLAST of Sed0023585 vs. ExPASy Swiss-Prot
Match: O13610 (rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fcf1 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 71/188 (37.77%), Postives = 97/188 (51.60%), Query Frame = 0


Query: 2   KKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYNT 61
           +K A  K + N K++ L  ++KD  KE  E+  K+         R  P + S LFF++N 
Sbjct: 8   RKFAQVKRVINLKDQRL--QKKDQKKEK-EKTTKN-----GELVREIPQMASNLFFQFNE 67

Query: 62  GLGPPYRVLVDTSTI------------------------CITDCVRAELEKLQLKY---- 121
            LGPPY V++DT+ I                        CI+DCV AELEKL ++Y    
Sbjct: 68  SLGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGIRYRIAL 127

Query: 122 QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYITR 143
           +I+K+ RFERLPCTHKGTY DDC V+RV Q                   IPG+PI+ +  
Sbjct: 128 RIAKDERFERLPCTHKGTYADDCIVQRVMQHKCYLVATNDKNLKQRIRKIPGIPILSVAN 187

[Close]

BLAST of Sed0023585 vs. ExPASy TrEMBL
Match: A0A2U1NYA1 (PIN domain-like family protein OS=Artemisia annua OX=35608 GN=CTI12_AA207300 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.1e-48
Identity = 106/173 (61.27%), Postives = 120/173 (69.36%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           MKK+ + KA+K +KEEVLNP +KD TK+NL               R  PYV S LFF YN
Sbjct: 13  MKKLVSHKAVKQHKEEVLNPNKKDLTKQNL--------------PRNVPYVSSVLFFTYN 72

Query: 61  TGLGPPYRVLVDTS-------------TICITDCVRAELEKLQLKY----QISKNPRFER 120
           T LGPPYRVLVDT+             T CITDCV AELEKL  KY    +I+K+PRFER
Sbjct: 73  TALGPPYRVLVDTNFINFSIQNKVSIGTPCITDCVMAELEKLGQKYRVALRIAKDPRFER 132

Query: 121 LPCTHKGTYVDDCFVERVKQIPGVPIMYITRHQYSIERLPEATIGGGIYIYIY 157
           LPCTHKGTY DDC VERV QIPGVPIMYIT+H+YSIERLPEAT+GGG +  IY
Sbjct: 133 LPCTHKGTYADDCIVERVTQIPGVPIMYITQHKYSIERLPEATMGGGRFFLIY 171

[Close]

BLAST of Sed0023585 vs. ExPASy TrEMBL
Match: A0A0A0LEW8 (PINc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G821570 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 115/196 (58.67%), Postives = 121/196 (61.73%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           MKKM TSKAIKNYKEEVLNPKRKD TKENL               R  P VPSALFFKYN
Sbjct: 13  MKKMVTSKAIKNYKEEVLNPKRKDLTKENL--------------PRNVPNVPSALFFKYN 72

Query: 61  TGLGPPYRVLVDTS------------------------TICITDCVRAELEKLQLKY--- 120
           T LGPPYRVLVDT+                        T CITDCV AELE+L  KY   
Sbjct: 73  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 132

Query: 121 -QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYIT 150
            +I+K+PRFERLPCTHKGTY DDC VERV Q                   +PGVPIMYIT
Sbjct: 133 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYIT 192

[Close]

BLAST of Sed0023585 vs. ExPASy TrEMBL
Match: A0A5D3DQI4 (rRNA-processing protein FCF1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006820 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.3e-47
Identity = 115/197 (58.38%), Postives = 122/197 (61.93%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           MKKM TSKAIKNYK+EVLNPKRKD TKENL               R  P VPSALFFK+N
Sbjct: 13  MKKMVTSKAIKNYKQEVLNPKRKDLTKENL--------------PRNVPNVPSALFFKHN 72

Query: 61  TGLGPPYRVLVDTS------------------------TICITDCVRAELEKLQLKY--- 120
           T LGPPYRVLVDT+                        T CITDCV AELE+L  KY   
Sbjct: 73  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 132

Query: 121 -QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYIT 151
            +I+K+PRFERLPCTHKGTY DDC VERV Q                   IPGVPIMYIT
Sbjct: 133 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYIT 192

[Close]

BLAST of Sed0023585 vs. ExPASy TrEMBL
Match: A0A5A7UFA7 (rRNA-processing protein FCF1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002670 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 6.7e-47
Identity = 114/198 (57.58%), Postives = 122/198 (61.62%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           MKK+ TSKAIKNYK+EVLNPKRKD TKENL               R  P VPSALFFK+N
Sbjct: 13  MKKLVTSKAIKNYKQEVLNPKRKDLTKENL--------------PRNVPNVPSALFFKHN 72

Query: 61  TGLGPPYRVLVDTS------------------------TICITDCVRAELEKLQLKY--- 120
           T LGPPYRVLVDT+                        T CITDCV AELE+L  KY   
Sbjct: 73  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 132

Query: 121 --QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYI 151
             +I+K+PRFERLPCTHKGTY DDC VERV Q                   IPGVPIMYI
Sbjct: 133 LSRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYI 192

[Close]

BLAST of Sed0023585 vs. ExPASy TrEMBL
Match: A0A6J1DX25 (rRNA-processing protein FCF1 homolog OS=Momordica charantia OX=3673 GN=LOC111025245 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.7e-47
Identity = 113/196 (57.65%), Postives = 121/196 (61.73%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           MKKM TSKAIKNYK+EVLNPK+KD TKENL               R  P VPSALFFKYN
Sbjct: 13  MKKMVTSKAIKNYKQEVLNPKKKDLTKENL--------------PRNVPNVPSALFFKYN 72

Query: 61  TGLGPPYRVLVDTS------------------------TICITDCVRAELEKLQLKY--- 120
           T LGPPYRVLVDT+                        T CITDCV AELE+L  KY   
Sbjct: 73  TALGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELERLGQKYRVA 132

Query: 121 -QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYIT 150
            +I+K+PRFERLPCTHKGTY DDC VERV Q                   +PGVPIMYIT
Sbjct: 133 LRIAKDPRFERLPCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKVPGVPIMYIT 192

[Close]

BLAST of Sed0023585 vs. TAIR 10
Match: AT2G46230.1 (PIN domain-like family protein )

HSP 1 Score: 156.0 bits (393), Expect = 2.5e-38
Identity = 92/196 (46.94%), Postives = 109/196 (55.61%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           +KKM + KA+K+YKEEVLNP +KD T+                  R  P VP+ LFF YN
Sbjct: 13  VKKMISHKALKHYKEEVLNPNKKDLTE----------------LPRNVPSVPAGLFFSYN 72

Query: 61  TGLGPPYRVLVDTS------------------------TICITDCVRAELEKLQLKY--- 120
           + L PPYRVLVDT+                        T CITDCV AELEKL  KY   
Sbjct: 73  STLVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVA 132

Query: 121 -QISKNPRFERLPCTHKGTYVDDCFVERVKQ-------------------IPGVPIMYIT 150
            +I+K+P FERLPC HKGTY DDC V+RV Q                   IPGVPIMY+T
Sbjct: 133 LRIAKDPHFERLPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVT 192

[Close]

BLAST of Sed0023585 vs. TAIR 10
Match: AT1G26530.1 (PIN domain-like family protein )

HSP 1 Score: 139.0 bits (349), Expect = 3.2e-33
Identity = 82/178 (46.07%), Postives = 102/178 (57.30%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           MK M + KA+K+YKEEVLNP +KD T+                  R  P VPS LFF +N
Sbjct: 13  MKMMISHKALKHYKEEVLNPNKKDLTE----------------LPRNVPSVPSGLFFSHN 72

Query: 61  TGLGPPYRVLVDTSTICITDCVRAELEKLQLKY----------QISKNPRFERLPCTHKG 120
           + L PPYRVLVDT+ I  +   + +LEK  + +           I+K+PRFERLPC  KG
Sbjct: 73  SSLVPPYRVLVDTNFINFSIQNKIDLEKGMMVFVRKMHSLYYGLIAKDPRFERLPCVLKG 132

Query: 121 TYVDDCFVERVKQ-------------------IPGVPIMYITRHQYSIERLPEATIGG 150
           TY DDC V+RV Q                   IPGVPIMY+T+ +YSIE+LPEATIGG
Sbjct: 133 TYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTQRKYSIEKLPEATIGG 174

[Close]

BLAST of Sed0023585 vs. TAIR 10
Match: AT2G46230.2 (PIN domain-like family protein )

HSP 1 Score: 122.1 bits (305), Expect = 4.0e-28
Identity = 72/151 (47.68%), Postives = 85/151 (56.29%), Query Frame = 0


Query: 1   MKKMATSKAIKNYKEEVLNPKRKDPTKENLEEICKDLFVFVFNFQRVFPYVPSALFFKYN 60
           +KKM + KA+K+YKEEVLNP +KD T+                  R  P VP+ LFF YN
Sbjct: 13  VKKMISHKALKHYKEEVLNPNKKDLTE----------------LPRNVPSVPAGLFFSYN 72

Query: 61  TGLGPPYRVLVDTS------------------------TICITDCVRAELEKLQLKY--- 120
           + L PPYRVLVDT+                        T CITDCV AELEKL  KY   
Sbjct: 73  STLVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVA 132

Query: 121 -QISKNPRFERLPCTHKGTYVDDCFVERVKQ 124
            +I+K+P FERLPC HKGTY DDC V+RV Q
Sbjct: 133 LRIAKDPHFERLPCIHKGTYADDCLVDRVTQ 147

The following BLAST results are available for this feature:

BLAST of Sed0023585 vs. NCBI nr


Match Name	E-value	Identity	Description
PWA78492.1	1.3e-47	61.27	PIN domain-like family protein [Artemisia annua]	[more]
XP_004136642.1	3.6e-47	58.67	rRNA-processing protein FCF1 homolog [Cucumis sativus] >KGN59454.1 hypothetical ...	[more]
TYK25530.1	4.8e-47	58.38	rRNA-processing protein FCF1-like protein [Cucumis melo var. makuwa]	[more]
XP_038903189.1	6.2e-47	58.67	rRNA-processing protein FCF1 homolog [Benincasa hispida]	[more]
KAA0053874.1	1.4e-46	57.58	rRNA-processing protein FCF1-like protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0023585 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32PD0	7.2e-30	43.68	rRNA-processing protein FCF1 homolog OS=Bos taurus OX=9913 GN=FCF1 PE=2 SV=1	[more]
Q9Y324	7.2e-30	43.68	rRNA-processing protein FCF1 homolog OS=Homo sapiens OX=9606 GN=FCF1 PE=1 SV=1	[more]
Q5RFQ0	7.2e-30	43.68	rRNA-processing protein FCF1 homolog OS=Pongo abelii OX=9601 GN=FCF1 PE=2 SV=1	[more]
Q9CTH6	3.6e-29	42.63	rRNA-processing protein FCF1 homolog OS=Mus musculus OX=10090 GN=Fcf1 PE=2 SV=2	[more]
O13610	1.3e-23	37.77	rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Sed0023585 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2U1NYA1	6.1e-48	61.27	PIN domain-like family protein OS=Artemisia annua OX=35608 GN=CTI12_AA207300 PE=...	[more]
A0A0A0LEW8	1.8e-47	58.67	PINc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G821570 PE=3 S...	[more]
A0A5D3DQI4	2.3e-47	58.38	rRNA-processing protein FCF1-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7UFA7	6.7e-47	57.58	rRNA-processing protein FCF1-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1DX25	8.7e-47	57.65	rRNA-processing protein FCF1 homolog OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Sed0023585 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46230.1	2.5e-38	46.94	PIN domain-like family protein	[more]
AT1G26530.1	3.2e-33	46.07	PIN domain-like family protein	[more]
AT2G46230.2	4.0e-28	47.68	PIN domain-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.1010		coord: 53..147 e-value: 1.3E-12 score: 49.6
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 1..76
None	No IPR available	PANTHER	PTHR12416:SF2	RRNA-PROCESSING PROTEIN FCF1 HOMOLOG	coord: 1..76
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 120..150
None	No IPR available	PANTHER	PTHR12416:SF2	RRNA-PROCESSING PROTEIN FCF1 HOMOLOG	coord: 120..150
None	No IPR available	PANTHER	PTHR12416:SF2	RRNA-PROCESSING PROTEIN FCF1 HOMOLOG	coord: 75..123
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 75..123
IPR006984	rRNA-processing protein Fcf1/Utp23	PFAM	PF04900	Fcf1	coord: 69..122 e-value: 1.9E-11 score: 44.2
IPR029060	PIN-like domain superfamily	SUPERFAMILY	88723	PIN domain-like	coord: 65..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023585.1	Sed0023585.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0032040	small-subunit processome