Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTAGAGAGAAATATGATCTTTTATATTAGATTGTATAAATAGCCCCATGTATATTCCTTTTTAATTAATAATAATAACTCTTTCTCTAATTTCTGAAGTTCAAATTGGTATCAGAGCAATTCTATTGCGCAACAATAAGAAATTCCCAAAATCCAAAACCCTTCTTTCACCGTCAATCTCACAACCTCCATCCTGAGTTCTTCGCCATCAATCTCTGCTTCTTCCGCCGTCAACCTTCTTCCCAAAATTCATCGCCATCAATACCAATCTCAATCTTCGAGCAATGGATCCCAAAAATCCTAAAGATCCAGAAAAAGAATCAAAGATTGAAGAACCATTAAAAGTACCGCCGATTCAGATAGATCCGTCACTGACTATCGTTCCAAGTCGTCAAGAATCGCTGATCGGAGAAAGCTCACAAAGTCAATATTACGTACATCACACCGATACAACGAATTTGGTACTGGTGTCCGAACTGCTAACCAATGATAACTATGTAACTTGGAGCAGATCGATGATCATTGCCCTATCAATCAGGAATAAGCTGGGATTTGTGAATGGGACGATACAGAGGCCGAAAGAAGAAGAGTTTCTACACCTGTGGACAAGAAACAATCATATAGTCATTTCTTGGATCCTAAACTCCATATCAAAAGGTATTTCATCTTCCATTATCTTTACAGATTATGCAAGGGCAATTTGGTTAGATCTTAAAGATCGCTTTGAAAGGAAAAATGGACCTAGGATTTTTCATTTAAAGAAAGGATTGACTACTATCAAACAAGGTCAGGATTCTGTAACAACATATTTCTCAAGAATCAAATCTTTATGGGATGAATATGCTTGCTATAGGCCTAGTTGTACTTGTGGGTTGTGCAGCTGTGGAGGTTTGAAGTCTATTCAAGAATTTGTACATTTTGAGTATCTTTTAGTCTTCTTGATGGGTCTAAATGATGAGTTTTCTACTACTAGATCACAAATACTTCTCATGGATCCATTGCCACCAGCCAATAAGGCTTTTTCTTTAATCGTACAAGAAGAGGAACATAAGGGAGATACAAATATTAAGAGTAATAGTACCTTAGCTGCCACTCAGTCTAAAACCACATACAAAGGGAAGGATTCTAAGCCAGTATGCAAGCATTGTGGTCTCATAGGACACACAATTGATGTTTGCTATAGAATACATGGATATCCGGATAATAGACCTGTGTGCAAGCATTGTGGGTTACAAGGACACACCATCGATGTATGTTATAAAATACATGGGTATCCACCTAGTAACAAGCAAAGGAAAAATAACTACAAGCAAACCAATGATAACCAAGGTTCTGTACAACCTGAAAACAAATCTTGCAAATCAGCAACAGTTGCAGCTAGCAATATTGAAAGTGATCCTTTTCAACAATGTCATGATATATTGACTCTTCTTCAATCCAAGTTAGCTGGCATCAAGAATGACAATGGAGCGAACCTAACGCAACATATGGCAGGTATGACACAAACATATGATTATTTTAAAGATAGATGGATACTAGATTCAGGTGCAGCAGCCCATATATGTCATAACAAAGATATATTCATGAATTTAAAAAGGATTGATACCTCTGTGATATTACCTAATAAGGATAGGATTATAGTCACTCATGCTGGATCTATATTGTTGTGTGGATCTATCATTTTAGATAGAGTCTTGTATGTTCCAAGTTTTAAATACAATTTATTGTCTATTAGTGCACTAACCTTGAATGATGCAGTGTTAGTAAATTTCACAACTAATGCTTGTATTATCCAGGACAAGCGCACTTTGAAGATGATTGGGAAGGGTAATCTTGAGCAAGGATTATATGCGTTAGAGGAGGTACCTTTATCTGCAGCATTGAATACTGTTTGTAGTGTAAGGAGTGGCTCACCATCCCTATGGCATAGGAGATTAGGTCATCCAGCTGATTTACCTTTAGTTGCTTTAAAAAATGTACTTTCTTTTGATGCAAATTGTAAAGGGGCTGAAAATTGTACTATATGCCCTTTGGCTAAACAAAACAGATTGAGATTCATTTCAAATAATAATAAATCAGATGCTATTTTTG
mRNA sequence
GGTAGAGAGAAATATGATCTTTTATATTAGATTGTATAAATAGCCCCATGTATATTCCTTTTTAATTAATAATAATAACTCTTTCTCTAATTTCTGAAGTTCAAATTGGTATCAGAGCAATTCTATTGCGCAACAATAAGAAATTCCCAAAATCCAAAACCCTTCTTTCACCGTCAATCTCACAACCTCCATCCTGAGTTCTTCGCCATCAATCTCTGCTTCTTCCGCCGTCAACCTTCTTCCCAAAATTCATCGCCATCAATACCAATCTCAATCTTCGAGCAATGGATCCCAAAAATCCTAAAGATCCAGAAAAAGAATCAAAGATTGAAGAACCATTAAAAGTACCGCCGATTCAGATAGATCCGTCACTGACTATCGTTCCAAGTCGTCAAGAATCGCTGATCGGAGAAAGCTCACAAAGTCAATATTACGTACATCACACCGATACAACGAATTTGGTACTGGTGTCCGAACTGCTAACCAATGATAACTATGTAACTTGGAGCAGATCGATGATCATTGCCCTATCAATCAGGAATAAGCTGGGATTTGTGAATGGGACGATACAGAGGCCGAAAGAAGAAGAGTTTCTACACCTGTGGACAAGAAACAATCATATAGTCATTTCTTGGATCCTAAACTCCATATCAAAAGGTATTTCATCTTCCATTATCTTTACAGATTATGCAAGGGCAATTTGGTTAGATCTTAAAGATCGCTTTGAAAGGAAAAATGGACCTAGGATTTTTCATTTAAAGAAAGGATTGACTACTATCAAACAAGGTCAGGATTCTGTAACAACATATTTCTCAAGAATCAAATCTTTATGGGATGAATATGCTTGCTATAGGCCTAGTTGTACTTGTGGGTTGTGCAGCTGTGGAGGTTTGAAGTCTATTCAAGAATTTGTACATTTTGAGTATCTTTTAGTCTTCTTGATGGGTCTAAATGATGAGTTTTCTACTACTAGATCACAAATACTTCTCATGGATCCATTGCCACCAGCCAATAAGGCTTTTTCTTTAATCGTACAAGAAGAGGAACATAAGGGAGATACAAATATTAAGAGTAATAGTACCTTAGCTGCCACTCAGTCTAAAACCACATACAAAGGGAAGGATTCTAAGCCAGTATGCAAGCATTGTGGTCTCATAGGACACACAATTGATGTTTGCTATAGAATACATGGATATCCGGATAATAGACCTGTGTGCAAGCATTGTGGGTTACAAGGACACACCATCGATGTATGTTATAAAATACATGGGTATCCACCTAGTAACAAGCAAAGGAAAAATAACTACAAGCAAACCAATGATAACCAAGGTTCTGTACAACCTGAAAACAAATCTTGCAAATCAGCAACAGTTGCAGCTAGCAATATTGAAAGTGATCCTTTTCAACAATGTCATGATATATTGACTCTTCTTCAATCCAAGTTAGCTGGCATCAAGAATGACAATGGAGCGAACCTAACGCAACATATGGCAGGACAAGCGCACTTTGAAGATGATTGGGAAGGGTAATCTTGAGCAAGGATTATATGCGTTAGAGGAGGTACCTTTATCTGCAGCATTGAATACTGTTTGTAGTGTAAGGAGTGGCTCACCATCCCTATGGCATAGGAGATTAGGTCATCCAGCTGATTTACCTTTAGTTGCTTTAAAAAATGTACTTTCTTTTGATGCAAATTGTAAAGGGGCTGAAAATTGTACTATATGCCCTTTGGCTAAACAAAACAGATTGAGATTCATTTCAAATAATAATAAATCAGATGCTATTTTTG
Coding sequence (CDS)
ATGGATCCCAAAAATCCTAAAGATCCAGAAAAAGAATCAAAGATTGAAGAACCATTAAAAGTACCGCCGATTCAGATAGATCCGTCACTGACTATCGTTCCAAGTCGTCAAGAATCGCTGATCGGAGAAAGCTCACAAAGTCAATATTACGTACATCACACCGATACAACGAATTTGGTACTGGTGTCCGAACTGCTAACCAATGATAACTATGTAACTTGGAGCAGATCGATGATCATTGCCCTATCAATCAGGAATAAGCTGGGATTTGTGAATGGGACGATACAGAGGCCGAAAGAAGAAGAGTTTCTACACCTGTGGACAAGAAACAATCATATAGTCATTTCTTGGATCCTAAACTCCATATCAAAAGGTATTTCATCTTCCATTATCTTTACAGATTATGCAAGGGCAATTTGGTTAGATCTTAAAGATCGCTTTGAAAGGAAAAATGGACCTAGGATTTTTCATTTAAAGAAAGGATTGACTACTATCAAACAAGGTCAGGATTCTGTAACAACATATTTCTCAAGAATCAAATCTTTATGGGATGAATATGCTTGCTATAGGCCTAGTTGTACTTGTGGGTTGTGCAGCTGTGGAGGTTTGAAGTCTATTCAAGAATTTGTACATTTTGAGTATCTTTTAGTCTTCTTGATGGGTCTAAATGATGAGTTTTCTACTACTAGATCACAAATACTTCTCATGGATCCATTGCCACCAGCCAATAAGGCTTTTTCTTTAATCGTACAAGAAGAGGAACATAAGGGAGATACAAATATTAAGAGTAATAGTACCTTAGCTGCCACTCAGTCTAAAACCACATACAAAGGGAAGGATTCTAAGCCAGTATGCAAGCATTGTGGTCTCATAGGACACACAATTGATGTTTGCTATAGAATACATGGATATCCGGATAATAGACCTGTGTGCAAGCATTGTGGGTTACAAGGACACACCATCGATGTATGTTATAAAATACATGGGTATCCACCTAGTAACAAGCAAAGGAAAAATAACTACAAGCAAACCAATGATAACCAAGGTTCTGTACAACCTGAAAACAAATCTTGCAAATCAGCAACAGTTGCAGCTAGCAATATTGAAAGTGATCCTTTTCAACAATGTCATGATATATTGACTCTTCTTCAATCCAAGTTAGCTGGCATCAAGAATGACAATGGAGCGAACCTAACGCAACATATGGCAGGACAAGCGCACTTTGAAGATGATTGGGAAGGGTAA
Protein sequence
MDPKNPKDPEKESKIEEPLKVPPIQIDPSLTIVPSRQESLIGESSQSQYYVHHTDTTNLVLVSELLTNDNYVTWSRSMIIALSIRNKLGFVNGTIQRPKEEEFLHLWTRNNHIVISWILNSISKGISSSIIFTDYARAIWLDLKDRFERKNGPRIFHLKKGLTTIKQGQDSVTTYFSRIKSLWDEYACYRPSCTCGLCSCGGLKSIQEFVHFEYLLVFLMGLNDEFSTTRSQILLMDPLPPANKAFSLIVQEEEHKGDTNIKSNSTLAATQSKTTYKGKDSKPVCKHCGLIGHTIDVCYRIHGYPDNRPVCKHCGLQGHTIDVCYKIHGYPPSNKQRKNNYKQTNDNQGSVQPENKSCKSATVAASNIESDPFQQCHDILTLLQSKLAGIKNDNGANLTQHMAGQAHFEDDWEG
Homology
BLAST of Sed0023566 vs. NCBI nr
Match:
XP_022154973.1 (uncharacterized protein LOC111022117 [Momordica charantia])
HSP 1 Score: 340.5 bits (872), Expect = 2.0e-89
Identity = 177/379 (46.70%), Postives = 242/379 (63.85%), Query Frame = 0
Query: 51 VHHTDTTNLVLVSELLTNDNYVTWSRSMIIALSIRNKLGFVNGTIQRPKEEEFLHLWTRN 110
+HH DT+NLVLVS+ LTN NYV+WSRSM IALSI+NKLGF+NG++ +P + L +W RN
Sbjct: 1 MHHNDTSNLVLVSKPLTNSNYVSWSRSMTIALSIKNKLGFINGSLPKP-AGDLLPVWIRN 60
Query: 111 NHIVISWILNSISKGISSSIIFTDYARAIWLDLKDRFERKNGPRIFHLKKGLTTIKQGQD 170
H+VI+W LNS+SK IS+S+IFT+ IWLDLKDRF+ +NGP+IF L++ L T+ Q Q
Sbjct: 61 KHVVIAWFLNSVSKPISASLIFTNSTHEIWLDLKDRFQLQNGPQIFQLRRDLATLTQDQL 120
Query: 171 SVTTYFSRIKSLWDEYACYRPSCTCGLCSCGGLKSIQEFVHFEYLLVFLMGLNDEFSTTR 230
SVT Y++++K+LWDEY YRP CTCG CSCGG + +++FV FE+L+ FLMGLN+ F+ R
Sbjct: 121 SVTMYYTKLKALWDEYVSYRPGCTCGSCSCGGYRLVEKFVQFEHLMKFLMGLNESFAHIR 180
Query: 231 SQILLMDPLPPANKAFSLIVQEEEHKGDTNIKSNST---LAATQSKT-------TYKGKD 290
+QILLMDP P KAFSLI QEE+ + + S LA QS++ + +
Sbjct: 181 AQILLMDPPPSIGKAFSLISQEEQQRVIPLFSTPSPAVGLAVNQSRSSSASNSGSRQRNS 240
Query: 291 SKPVCKHCGLIGHTIDVCYRIHGYPD--NRPVCKHCGLQGHTIDVCYKIHGYPPSNKQRK 350
S P C +CG+ GHT+D CYR+HG+P +H T V P SN
Sbjct: 241 SCPYCTNCGIRGHTVDKCYRLHGFPSGYRSKGNQHSSTPSMTSSVSSTTSSSPASNSPST 300
Query: 351 ---NNYKQTNDNQGSVQPENKSCKSATVAASNIESDPFQQCHDILTLLQSKLAGIKNDNG 410
N+ QT+ + + P + SD F QCH+IL +LQS+L K D+
Sbjct: 301 AIVNSISQTSASSSLISP--------------MTSDAFSQCHNILNMLQSQLNAAKTDSE 360
Query: 411 ANLTQHMAGQAHFEDDWEG 415
A + ++AG+ HF+DDW+G
Sbjct: 361 A--SPYLAGKVHFQDDWQG 362
BLAST of Sed0023566 vs. NCBI nr
Match:
XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])
HSP 1 Score: 307.4 bits (786), Expect = 1.9e-79
Identity = 161/372 (43.28%), Postives = 237/372 (63.71%), Query Frame = 0
Query: 40 LIGESSQSQYYVHHTDTTNLVLVSELLTNDNYVTWSRSMIIALSIRNKLGFVNGTIQRPK 99
++ E + Y++HH+D T+LVLVS+LLT++NY +WSRS++IAL+++NK+GFV+G+I RP
Sbjct: 20 IVVEQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTVKNKIGFVDGSISRPT 79
Query: 100 EEEFLHLWTRNNHIVISWILNSISKGISSSIIFTDYARAIWLDLKDRFERKNGPRIFHLK 159
+ LH W N++VISWI NS+SK IS+S++F+D A IWLDLK+RF+R+N PRIF L+
Sbjct: 80 DGR-LHSWIICNNVVISWIFNSLSKKISASVLFSDSAHEIWLDLKERFQRQNRPRIFQLR 139
Query: 160 KGLTTIKQGQDSVTTYFSRIKSLWDEYACYRPSCTCGLCSCGGLKSIQEFVHFEYLLVFL 219
+ L+ + Q Q SVT YF+R+K+LW E A YRP+C+CG CS GG+KSI+ EY++ FL
Sbjct: 140 RELSNLTQDQLSVTAYFTRLKTLWSELALYRPACSCGRCSYGGVKSIEAHYQQEYVMAFL 199
Query: 220 MGLNDEFSTTRSQILLMDPLPPANKAFSLIVQEEEHKGDTNIKSNSTLAATQSKTTYKGK 279
MGLN FS R+Q+LLM+P P N+AF+L+ QE + + ++ S ++ A+ + T
Sbjct: 200 MGLNVSFSQIRAQLLLMEPAPTINRAFALVAQEMQQR-SISLPSVTSPTASAVRATSNSS 259
Query: 280 DSKPVCKHCGLIGHTIDVCYRIHGYPDNRPVCKHCGLQGHTIDVCYKIHGYPPSNKQRKN 339
+S+ ++ H ++ +C HCG+ GHT+D CYK+H YPP R +
Sbjct: 260 NSR------------LNSSSASHMKRKDKSLCTHCGIYGHTVDKCYKLHEYPPG--YRSS 319
Query: 340 NYKQTNDNQGSVQPENKSCKSATVAASNIESD----PFQQCHDILTLLQSKLAGIK---- 399
+K T+ N S + KS + S I + QC +LTLLQS L K
Sbjct: 320 VHKTTSSNATSSRSAEAPSKSVSATPSGISNSLATLTADQCQRLLTLLQSHLTTTKTASD 372
Query: 400 NDNGANLTQHMA 404
ND+G T H+A
Sbjct: 380 NDSG---TSHVA 372
BLAST of Sed0023566 vs. NCBI nr
Match:
GFY98609.1 (haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Actinidia rufa])
HSP 1 Score: 305.8 bits (782), Expect = 5.5e-79
Identity = 165/395 (41.77%), Postives = 237/395 (60.00%), Query Frame = 0
Query: 40 LIGESSQSQYYVHHTDTTNLVLVSELLTNDNYVTWSRSMIIALSIRNKLGFVNGTIQRPK 99
L + S Y++HH+D LVLVS+ LT DNY +W+R+MIIALS++NKLGF++G+I +P+
Sbjct: 262 LATDDPSSPYFLHHSDGPELVLVSQSLTGDNYASWNRAMIIALSVKNKLGFIDGSITKPE 321
Query: 100 --EEEFLHLWTRNNHIVISWILNSISKGISSSIIFTDYARAIWLDLKDRFERKNGPRIFH 159
+ L+ W RNN++VISWILNS+SK IS+SIIF+ A IW+DLKDRF++ NGPRIF
Sbjct: 322 GNDTNLLNSWIRNNNVVISWILNSVSKEISASIIFSASANEIWIDLKDRFQQSNGPRIFQ 381
Query: 160 LKKGLTTIKQGQDSVTTYFSRIKSLWDEYACYRPSCTCGLCSCGGLKSIQEFVHFEYLLV 219
L++ L Q Q V+ YF+++K++W+E YRP+C+CG C+CGG+K + EY++
Sbjct: 382 LRRELMNHVQDQSPVSVYFTKLKTIWEELNNYRPACSCGNCTCGGVKKLNSHYQMEYIMS 441
Query: 220 FLMGLNDEFSTTRSQILLMDPLPPANKAFSLIVQEEEHKG---DTNIKSNS--TLA-ATQ 279
FLM L+ F+ R Q+LLMDPLPP NK FSLI QEE + N SNS T+A A +
Sbjct: 442 FLMVLHYSFAQIRGQLLLMDPLPPINKVFSLISQEEHQRKIGIHVNSISNSADTMAFAIK 501
Query: 280 SKTTYKGKDSKPVCKHCGLIGHTIDVCYRIHGYPDNRPVCKHCGLQGHTIDVCYKIHGYP 339
++ + D G G+ Y+ G +R C HC GHTI+ CYK HGYP
Sbjct: 502 NENLKRFSDKSGSSNSGGYRGNQNSASYK--GQKKDRAFCTHCNFHGHTIEKCYKRHGYP 561
Query: 340 PSNKQR-KNNYKQTNDNQGSVQPENKSCKSATVA----------ASNIESDPFQQCHDIL 399
P K R ++ Y +N + Q N SC + +N+ S+ +QQ ++
Sbjct: 562 PGFKPRSRDAYTTSNSHNAVNQVSNHSCSISEARNDQQDNVGNFVTNLNSNQYQQ---LM 621
Query: 400 TLLQSKLA-GIKNDNGANLTQHMAGQAHFEDDWEG 415
+L + +A +K+ T + G EDDW+G
Sbjct: 622 CMLSNHMASSVKDQQDNPSTSYTTGHQQQEDDWQG 651
BLAST of Sed0023566 vs. NCBI nr
Match:
KAA8536734.1 (hypothetical protein F0562_029212 [Nyssa sinensis])
HSP 1 Score: 303.5 bits (776), Expect = 2.7e-78
Identity = 158/357 (44.26%), Postives = 224/357 (62.75%), Query Frame = 0
Query: 43 ESSQSQYYVHHTDTTNLVLVSELLTNDNYVTWSRSMIIALSIRNKLGFVNGTIQRPK--E 102
E + YY+HH+++ VLVS+ LT +NY WSR+M+IALS++NKLGFV+G I P+ +
Sbjct: 24 EEPSNPYYLHHSNSPGQVLVSQQLTGENYTNWSRAMLIALSVKNKLGFVDGFIPEPQGTD 83
Query: 103 EEFLHLWTRNNHIVISWILNSISKGISSSIIFTDYARAIWLDLKDRFERKNGPRIFHLKK 162
L W RNN+IVISWILNSISK IS+SIIF +AR IWLDL+DRF+++NGPRIF LK+
Sbjct: 84 NNLLDSWIRNNNIVISWILNSISKEISASIIFAAFAREIWLDLRDRFQQRNGPRIFQLKR 143
Query: 163 GLTTIKQGQDSVTTYFSRIKSLWDEYACYRPSCTCGLCSCGGLKSIQEFVHFEYLLVFLM 222
L ++Q Q SV+ YF+++K++W+E + YRP+C+CG C CGG+K++ ++ EY++ FLM
Sbjct: 144 ELMNLRQEQSSVSIYFTKVKTIWEELSNYRPNCSCGKCYCGGVKNLNDYHQTEYIMSFLM 203
Query: 223 GLNDEFSTTRSQILLMDPLPPANKAFSLIVQEEEHKGDTNIKSNSTLAATQSKTTYKGKD 282
GL+D FS Q+LLMD +PP N+ FSLIVQEE+ + TN+ S+S+ + K
Sbjct: 204 GLDDSFSQVSGQLLLMDSMPPINRVFSLIVQEEQQR-RTNLSSDSSNSTGTMAFVVKTDV 263
Query: 283 SKPVCKHCGLIGHTIDVCYRIHGYPDNRPVCKHCGLQGHTIDVCYKIHGYPPSNKQRKNN 342
+K G +RP C HC + GHT+D CYKIHGYPP K R NN
Sbjct: 264 AK--SGGSGSQNSQNSNSSASKNQKRDRPYCTHCKILGHTVDRCYKIHGYPPGYKFRSNN 323
Query: 343 YKQTNDNQGSVQPE-NKSCKSATVAASNIESDPFQQCHDILTLLQSKLAGIKNDNGA 397
Q S + + S N+ S+ +QQ ++++L + L+ K A
Sbjct: 324 NSNAAAYQVSTSDDRSDQSNSFEGFVQNLNSNQYQQ---LMSMLSTHLSSSKKVTNA 374
BLAST of Sed0023566 vs. NCBI nr
Match:
XP_038895765.1 (uncharacterized protein LOC120083929 [Benincasa hispida])
HSP 1 Score: 300.8 bits (769), Expect = 1.8e-77
Identity = 144/256 (56.25%), Postives = 191/256 (74.61%), Query Frame = 0
Query: 21 VPPIQIDPSL-----TIVPSRQESLIGESSQSQYYVHHTDTTNLVLVSELLTNDNYVTWS 80
+P I + PS T P+ L + Y +HH+DT+NLVLVSELLT+DNYV+WS
Sbjct: 3 IPEIPLRPSADPSSSTDFPTTGLPLSHLDQYTPYALHHSDTSNLVLVSELLTDDNYVSWS 62
Query: 81 RSMIIALSIRNKLGFVNGTIQRPKEEEFLHLWTRNNHIVISWILNSISKGISSSIIFTDY 140
RSM++ L I+NKLGF++G++ RP + LHLW NN++V+SWIL S+SK ISSSI+FT+
Sbjct: 63 RSMVLTLFIQNKLGFIDGSLPRP-TGDLLHLWIHNNNVVVSWILKSVSKSISSSILFTES 122
Query: 141 ARAIWLDLKDRFERKNGPRIFHLKKGLTTIKQGQDSVTTYFSRIKSLWDEYACYRPSCTC 200
A+AIWLDL+D F+R+NGPRIFHLK+ L+++KQ QDSVT YF+++KS DEY YRP CTC
Sbjct: 123 AQAIWLDLQDCFQRRNGPRIFHLKRELSSLKQDQDSVTMYFTKMKSFCDEYVSYRPGCTC 182
Query: 201 GLCSCGGLKSIQEFVHFEYLLVFLMGLNDEFSTTRSQILLMDPLPPANKAFSLIVQEEEH 260
G C+CGG+KS+++F+ FEYLL F MGLND F+ TRSQ+LLMDP PP NKAFS + Q+E+H
Sbjct: 183 GQCTCGGIKSMEDFLQFEYLLCFFMGLNDSFNHTRSQLLLMDPPPPLNKAFSFVFQQEQH 242
Query: 261 KGDTNIKSNSTLAATQ 272
+ N S+ Q
Sbjct: 243 QSLANPPSSVVTLTVQ 257
BLAST of Sed0023566 vs. ExPASy TrEMBL
Match:
A0A6J1DLQ9 (uncharacterized protein LOC111022117 OS=Momordica charantia OX=3673 GN=LOC111022117 PE=4 SV=1)
HSP 1 Score: 340.5 bits (872), Expect = 9.8e-90
Identity = 177/379 (46.70%), Postives = 242/379 (63.85%), Query Frame = 0
Query: 51 VHHTDTTNLVLVSELLTNDNYVTWSRSMIIALSIRNKLGFVNGTIQRPKEEEFLHLWTRN 110
+HH DT+NLVLVS+ LTN NYV+WSRSM IALSI+NKLGF+NG++ +P + L +W RN
Sbjct: 1 MHHNDTSNLVLVSKPLTNSNYVSWSRSMTIALSIKNKLGFINGSLPKP-AGDLLPVWIRN 60
Query: 111 NHIVISWILNSISKGISSSIIFTDYARAIWLDLKDRFERKNGPRIFHLKKGLTTIKQGQD 170
H+VI+W LNS+SK IS+S+IFT+ IWLDLKDRF+ +NGP+IF L++ L T+ Q Q
Sbjct: 61 KHVVIAWFLNSVSKPISASLIFTNSTHEIWLDLKDRFQLQNGPQIFQLRRDLATLTQDQL 120
Query: 171 SVTTYFSRIKSLWDEYACYRPSCTCGLCSCGGLKSIQEFVHFEYLLVFLMGLNDEFSTTR 230
SVT Y++++K+LWDEY YRP CTCG CSCGG + +++FV FE+L+ FLMGLN+ F+ R
Sbjct: 121 SVTMYYTKLKALWDEYVSYRPGCTCGSCSCGGYRLVEKFVQFEHLMKFLMGLNESFAHIR 180
Query: 231 SQILLMDPLPPANKAFSLIVQEEEHKGDTNIKSNST---LAATQSKT-------TYKGKD 290
+QILLMDP P KAFSLI QEE+ + + S LA QS++ + +
Sbjct: 181 AQILLMDPPPSIGKAFSLISQEEQQRVIPLFSTPSPAVGLAVNQSRSSSASNSGSRQRNS 240
Query: 291 SKPVCKHCGLIGHTIDVCYRIHGYPD--NRPVCKHCGLQGHTIDVCYKIHGYPPSNKQRK 350
S P C +CG+ GHT+D CYR+HG+P +H T V P SN
Sbjct: 241 SCPYCTNCGIRGHTVDKCYRLHGFPSGYRSKGNQHSSTPSMTSSVSSTTSSSPASNSPST 300
Query: 351 ---NNYKQTNDNQGSVQPENKSCKSATVAASNIESDPFQQCHDILTLLQSKLAGIKNDNG 410
N+ QT+ + + P + SD F QCH+IL +LQS+L K D+
Sbjct: 301 AIVNSISQTSASSSLISP--------------MTSDAFSQCHNILNMLQSQLNAAKTDSE 360
Query: 411 ANLTQHMAGQAHFEDDWEG 415
A + ++AG+ HF+DDW+G
Sbjct: 361 A--SPYLAGKVHFQDDWQG 362
BLAST of Sed0023566 vs. ExPASy TrEMBL
Match:
A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)
HSP 1 Score: 307.4 bits (786), Expect = 9.2e-80
Identity = 161/372 (43.28%), Postives = 237/372 (63.71%), Query Frame = 0
Query: 40 LIGESSQSQYYVHHTDTTNLVLVSELLTNDNYVTWSRSMIIALSIRNKLGFVNGTIQRPK 99
++ E + Y++HH+D T+LVLVS+LLT++NY +WSRS++IAL+++NK+GFV+G+I RP
Sbjct: 20 IVVEQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTVKNKIGFVDGSISRPT 79
Query: 100 EEEFLHLWTRNNHIVISWILNSISKGISSSIIFTDYARAIWLDLKDRFERKNGPRIFHLK 159
+ LH W N++VISWI NS+SK IS+S++F+D A IWLDLK+RF+R+N PRIF L+
Sbjct: 80 DGR-LHSWIICNNVVISWIFNSLSKKISASVLFSDSAHEIWLDLKERFQRQNRPRIFQLR 139
Query: 160 KGLTTIKQGQDSVTTYFSRIKSLWDEYACYRPSCTCGLCSCGGLKSIQEFVHFEYLLVFL 219
+ L+ + Q Q SVT YF+R+K+LW E A YRP+C+CG CS GG+KSI+ EY++ FL
Sbjct: 140 RELSNLTQDQLSVTAYFTRLKTLWSELALYRPACSCGRCSYGGVKSIEAHYQQEYVMAFL 199
Query: 220 MGLNDEFSTTRSQILLMDPLPPANKAFSLIVQEEEHKGDTNIKSNSTLAATQSKTTYKGK 279
MGLN FS R+Q+LLM+P P N+AF+L+ QE + + ++ S ++ A+ + T
Sbjct: 200 MGLNVSFSQIRAQLLLMEPAPTINRAFALVAQEMQQR-SISLPSVTSPTASAVRATSNSS 259
Query: 280 DSKPVCKHCGLIGHTIDVCYRIHGYPDNRPVCKHCGLQGHTIDVCYKIHGYPPSNKQRKN 339
+S+ ++ H ++ +C HCG+ GHT+D CYK+H YPP R +
Sbjct: 260 NSR------------LNSSSASHMKRKDKSLCTHCGIYGHTVDKCYKLHEYPPG--YRSS 319
Query: 340 NYKQTNDNQGSVQPENKSCKSATVAASNIESD----PFQQCHDILTLLQSKLAGIK---- 399
+K T+ N S + KS + S I + QC +LTLLQS L K
Sbjct: 320 VHKTTSSNATSSRSAEAPSKSVSATPSGISNSLATLTADQCQRLLTLLQSHLTTTKTASD 372
Query: 400 NDNGANLTQHMA 404
ND+G T H+A
Sbjct: 380 NDSG---TSHVA 372
BLAST of Sed0023566 vs. ExPASy TrEMBL
Match:
A0A7J0FKC9 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_13g0000100 PE=4 SV=1)
HSP 1 Score: 305.8 bits (782), Expect = 2.7e-79
Identity = 165/395 (41.77%), Postives = 237/395 (60.00%), Query Frame = 0
Query: 40 LIGESSQSQYYVHHTDTTNLVLVSELLTNDNYVTWSRSMIIALSIRNKLGFVNGTIQRPK 99
L + S Y++HH+D LVLVS+ LT DNY +W+R+MIIALS++NKLGF++G+I +P+
Sbjct: 262 LATDDPSSPYFLHHSDGPELVLVSQSLTGDNYASWNRAMIIALSVKNKLGFIDGSITKPE 321
Query: 100 --EEEFLHLWTRNNHIVISWILNSISKGISSSIIFTDYARAIWLDLKDRFERKNGPRIFH 159
+ L+ W RNN++VISWILNS+SK IS+SIIF+ A IW+DLKDRF++ NGPRIF
Sbjct: 322 GNDTNLLNSWIRNNNVVISWILNSVSKEISASIIFSASANEIWIDLKDRFQQSNGPRIFQ 381
Query: 160 LKKGLTTIKQGQDSVTTYFSRIKSLWDEYACYRPSCTCGLCSCGGLKSIQEFVHFEYLLV 219
L++ L Q Q V+ YF+++K++W+E YRP+C+CG C+CGG+K + EY++
Sbjct: 382 LRRELMNHVQDQSPVSVYFTKLKTIWEELNNYRPACSCGNCTCGGVKKLNSHYQMEYIMS 441
Query: 220 FLMGLNDEFSTTRSQILLMDPLPPANKAFSLIVQEEEHKG---DTNIKSNS--TLA-ATQ 279
FLM L+ F+ R Q+LLMDPLPP NK FSLI QEE + N SNS T+A A +
Sbjct: 442 FLMVLHYSFAQIRGQLLLMDPLPPINKVFSLISQEEHQRKIGIHVNSISNSADTMAFAIK 501
Query: 280 SKTTYKGKDSKPVCKHCGLIGHTIDVCYRIHGYPDNRPVCKHCGLQGHTIDVCYKIHGYP 339
++ + D G G+ Y+ G +R C HC GHTI+ CYK HGYP
Sbjct: 502 NENLKRFSDKSGSSNSGGYRGNQNSASYK--GQKKDRAFCTHCNFHGHTIEKCYKRHGYP 561
Query: 340 PSNKQR-KNNYKQTNDNQGSVQPENKSCKSATVA----------ASNIESDPFQQCHDIL 399
P K R ++ Y +N + Q N SC + +N+ S+ +QQ ++
Sbjct: 562 PGFKPRSRDAYTTSNSHNAVNQVSNHSCSISEARNDQQDNVGNFVTNLNSNQYQQ---LM 621
Query: 400 TLLQSKLA-GIKNDNGANLTQHMAGQAHFEDDWEG 415
+L + +A +K+ T + G EDDW+G
Sbjct: 622 CMLSNHMASSVKDQQDNPSTSYTTGHQQQEDDWQG 651
BLAST of Sed0023566 vs. ExPASy TrEMBL
Match:
A0A5J5B2C5 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029212 PE=4 SV=1)
HSP 1 Score: 303.5 bits (776), Expect = 1.3e-78
Identity = 158/357 (44.26%), Postives = 224/357 (62.75%), Query Frame = 0
Query: 43 ESSQSQYYVHHTDTTNLVLVSELLTNDNYVTWSRSMIIALSIRNKLGFVNGTIQRPK--E 102
E + YY+HH+++ VLVS+ LT +NY WSR+M+IALS++NKLGFV+G I P+ +
Sbjct: 24 EEPSNPYYLHHSNSPGQVLVSQQLTGENYTNWSRAMLIALSVKNKLGFVDGFIPEPQGTD 83
Query: 103 EEFLHLWTRNNHIVISWILNSISKGISSSIIFTDYARAIWLDLKDRFERKNGPRIFHLKK 162
L W RNN+IVISWILNSISK IS+SIIF +AR IWLDL+DRF+++NGPRIF LK+
Sbjct: 84 NNLLDSWIRNNNIVISWILNSISKEISASIIFAAFAREIWLDLRDRFQQRNGPRIFQLKR 143
Query: 163 GLTTIKQGQDSVTTYFSRIKSLWDEYACYRPSCTCGLCSCGGLKSIQEFVHFEYLLVFLM 222
L ++Q Q SV+ YF+++K++W+E + YRP+C+CG C CGG+K++ ++ EY++ FLM
Sbjct: 144 ELMNLRQEQSSVSIYFTKVKTIWEELSNYRPNCSCGKCYCGGVKNLNDYHQTEYIMSFLM 203
Query: 223 GLNDEFSTTRSQILLMDPLPPANKAFSLIVQEEEHKGDTNIKSNSTLAATQSKTTYKGKD 282
GL+D FS Q+LLMD +PP N+ FSLIVQEE+ + TN+ S+S+ + K
Sbjct: 204 GLDDSFSQVSGQLLLMDSMPPINRVFSLIVQEEQQR-RTNLSSDSSNSTGTMAFVVKTDV 263
Query: 283 SKPVCKHCGLIGHTIDVCYRIHGYPDNRPVCKHCGLQGHTIDVCYKIHGYPPSNKQRKNN 342
+K G +RP C HC + GHT+D CYKIHGYPP K R NN
Sbjct: 264 AK--SGGSGSQNSQNSNSSASKNQKRDRPYCTHCKILGHTVDRCYKIHGYPPGYKFRSNN 323
Query: 343 YKQTNDNQGSVQPE-NKSCKSATVAASNIESDPFQQCHDILTLLQSKLAGIKNDNGA 397
Q S + + S N+ S+ +QQ ++++L + L+ K A
Sbjct: 324 NSNAAAYQVSTSDDRSDQSNSFEGFVQNLNSNQYQQ---LMSMLSTHLSSSKKVTNA 374
BLAST of Sed0023566 vs. ExPASy TrEMBL
Match:
A0A5J5BKC2 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_021321 PE=4 SV=1)
HSP 1 Score: 293.5 bits (750), Expect = 1.4e-75
Identity = 145/302 (48.01%), Postives = 200/302 (66.23%), Query Frame = 0
Query: 43 ESSQSQYYVHHTDTTNLVLVSELLTNDNYVTWSRSMIIALSIRNKLGFVNGTIQRPK--E 102
E + YY+HH+D+ +LVS+ LT +NY WSR+M+IALS++NKLGFV+G+I P+
Sbjct: 24 EEPSNPYYLHHSDSLRQMLVSQQLTGENYTNWSRAMLIALSVKNKLGFVDGSILEPQGTG 83
Query: 103 EEFLHLWTRNNHIVISWILNSISKGISSSIIFTDYARAIWLDLKDRFERKNGPRIFHLKK 162
L+ W RNN+IVISWILNS+SK IS+SIIF AR IWLDL+DRF+++N PRIF LK+
Sbjct: 84 NNLLNSWIRNNNIVISWILNSVSKEISASIIFAASAREIWLDLRDRFQQRNRPRIFQLKR 143
Query: 163 GLTTIKQGQDSVTTYFSRIKSLWDEYACYRPSCTCGLCSCGGLKSIQEFVHFEYLLVFLM 222
L + Q Q SV+ YF+++K++W+E + YR +C+CG CSCGG+K++ + EY++ FLM
Sbjct: 144 ELMNLHQEQSSVSIYFTKLKTIWEELSNYRLNCSCGKCSCGGVKNLNDHHQMEYIMSFLM 203
Query: 223 GLNDEFSTTRSQILLMDPLPPANKAFSLIVQEEEHKGDTNIKSNSTLAATQSKTTYKGKD 282
GL+D FS R Q+LLMDP+PP N+ FSLIVQEE+ + ++NS+ ++ S T
Sbjct: 204 GLDDSFSQVRGQLLLMDPMPPINRVFSLIVQEEQQR-----RTNSSSDSSNSTGTMAFAV 263
Query: 283 SKPVCKH--CGLIGHTIDVCYRIHGYPDNRPVCKHCGLQGHTIDVCYKIHGYPPSNKQRK 341
V K G +R C HC + GHT+D CYKIHGYPP K +
Sbjct: 264 KTDVAKSGGSGSQNSQNSNSSASKNQKRDRLYCMHCKILGHTVDRCYKIHGYPPGYKFKS 320
BLAST of Sed0023566 vs. TAIR 10
Match:
AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 117.5 bits (293), Expect = 2.6e-26
Identity = 67/216 (31.02%), Postives = 112/216 (51.85%), Query Frame = 0
Query: 47 SQYY----VHHTDTTNLVLVSELLTNDNYVTWSRSMIIALSIRNKLGFVNGTIQRPKEEE 106
S YY +HH ++ +S+ DNYV W L + K GF++GT+ +P
Sbjct: 16 SPYYLPPDIHHPSDFSIQKLSK--DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFS 75
Query: 107 FLHL-WTRNNHIVISWILNSISKGISSSIIFTDYARAIWLDLKDRFERKNGPRIFHLKKG 166
L+ W + N +V+ W++NS++ + S+++ + A +W DL+ F +I+ L++
Sbjct: 76 PLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRR 135
Query: 167 LTTIKQGQDSVTTYFSRIKSLWDEYACYR--PSCTCGLCSCGGLKSIQEFVHFEYLLVFL 226
L T++QG DSV YF ++ +W E + Y P C CG C+C K +E E FL
Sbjct: 136 LATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFL 195
Query: 227 MG--LNDEFSTTRSQILLMDPLPPANKAFSLIVQEE 254
MG LN F ++I+ P P ++AF+++ E
Sbjct: 196 MGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022154973.1 | 2.0e-89 | 46.70 | uncharacterized protein LOC111022117 [Momordica charantia] | [more] |
XP_022154919.1 | 1.9e-79 | 43.28 | uncharacterized protein LOC111022065 [Momordica charantia] | [more] |
GFY98609.1 | 5.5e-79 | 41.77 | haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Actinidia rufa] | [more] |
KAA8536734.1 | 2.7e-78 | 44.26 | hypothetical protein F0562_029212 [Nyssa sinensis] | [more] |
XP_038895765.1 | 1.8e-77 | 56.25 | uncharacterized protein LOC120083929 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DLQ9 | 9.8e-90 | 46.70 | uncharacterized protein LOC111022117 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A6J1DNP7 | 9.2e-80 | 43.28 | uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A7J0FKC9 | 2.7e-79 | 41.77 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein OS=Actinidia rufa... | [more] |
A0A5J5B2C5 | 1.3e-78 | 44.26 | Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029212 PE=4 SV=1 | [more] |
A0A5J5BKC2 | 1.4e-75 | 48.01 | Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_021321 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT1G21280.1 | 2.6e-26 | 31.02 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha... | [more] |