Sed0023507 (gene) Chayote v1

Overview
NameSed0023507
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPhytosulfokine-beta
LocationLG07: 8561090 .. 8561947 (-)
RNA-Seq ExpressionSed0023507
SyntenySed0023507
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTGGTTCCTTTTGCCTTGAAGTTCCAAAATTGCCCTTTCACAATGCCTTTATATTCATTTCATTCTTTCCTCTTCCACATCTCTCAGCTCATACAAGGCAACATCAATGTCTTCCAAACTTTTGACCACCATCTTCACATTTCTCTTCCTTTTCTTCTTCTTATCCTCCTTGACAATCGCTGCTGTTGCTCGACCTGTGCCCGATTCTTCAAACACTTCTCCGAGAACGGCTCGAGATGGAGTATGTAAATTTTTCAGAATTTTTCTCTAGTTAATATATGTTTTTATAAAGAAAAAAAAAGTAGCAATTAAGTACTGTGTTTTTTTTTATGTTGTGAAGTTTAAGGTTGTGGATGATGTTTTGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCCGCTCATGCTGATTATATCTACACAGATAAACAGAAGCCTTGATATTATATGCTTCGATTAACTTATGTGCATCTCGACTATTTTTACGGAACAAACCGTTTGAATCCGACACGAACTGGCTGCCATCTTATTCTCATTAAGTATACACACAACAAGTTTCTCTCTATATATGTGAAGCCCTTTTTCATCACTTTTCTCCCCTAACATAGATTCATTCATCAAGAATTTGGGAGAAAATGAAAAAGTGATTCTTCAAGTTTCTTCGATTCGGGAAAGTCGATGTTATTCGAGTTGTAGATTCAACTTTCTGATCTCTTGGTTGAGAATATATGACTTAACTAATTGGGCTACACTCAGATTGGCTAAAAATTAATCATAATAGTTGAAGATATATGCTAGATTTTTGTACCTTTTAGAATCATAATATA

mRNA sequence

ATGATGTTGGTTCCTTTTGCCTTGAAGTTCCAAAATTGCCCTTTCACAATCTCATACAAGGCAACATCAATGTCTTCCAAACTTTTGACCACCATCTTCACATTTCTCTTCCTTTTCTTCTTCTTATCCTCCTTGACAATCGCTGCTGTTGCTCGACCTGTGCCCGATTCTTCAAACACTTCTCCGAGAACGGCTCGAGATGGATTTAAGGTTGTGGATGATGTTTTGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCCGCTCATGCTGATTATATCTACACAGATAAACAGAAGCCTTGATATTATATGCTTCGATTAACTTATGTGCATCTCGACTATTTTTACGGAACAAACCGTTTGAATCCGACACGAACTGGCTGCCATCTTATTCTCATTAAGTATACACACAACAAGTTTCTCTCTATATATGTGAAGCCCTTTTTCATCACTTTTCTCCCCTAACATAGATTCATTCATCAAGAATTTGGGAGAAAATGAAAAAGTGATTCTTCAAGTTTCTTCGATTCGGGAAAGTCGATGTTATTCGAGTTGTAGATTCAACTTTCTGATCTCTTGGTTGAGAATATATGACTTAACTAATTGGGCTACACTCAGATTGGCTAAAAATTAATCATAATAGTTGAAGATATATGCTAGATTTTTGTACCTTTTAGAATCATAATATA

Coding sequence (CDS)

ATGATGTTGGTTCCTTTTGCCTTGAAGTTCCAAAATTGCCCTTTCACAATCTCATACAAGGCAACATCAATGTCTTCCAAACTTTTGACCACCATCTTCACATTTCTCTTCCTTTTCTTCTTCTTATCCTCCTTGACAATCGCTGCTGTTGCTCGACCTGTGCCCGATTCTTCAAACACTTCTCCGAGAACGGCTCGAGATGGATTTAAGGTTGTGGATGATGTTTTGGAGGAGGAGAGTTGTGATGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCCGCTCATGCTGATTATATCTACACAGATAAACAGAAGCCTTGA

Protein sequence

MMLVPFALKFQNCPFTISYKATSMSSKLLTTIFTFLFLFFFLSSLTIAAVARPVPDSSNTSPRTARDGFKVVDDVLEEESCDEIGEEYCLMRKTLAAHADYIYTDKQKP
Homology
BLAST of Sed0023507 vs. NCBI nr
Match: KAG6600274.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-28
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 0

Query: 24  MSSKLLTTIFTFLFLFFFLSSLTIAAVARPVPDSSNTSPRTARDGFKVVDDVLEEESCDE 83
           M+SKL+T+IFTFLFLFFFL S T +  A+P+P S+NTSPRT RDGFKVVDDVLEEESC  
Sbjct: 1   MASKLVTSIFTFLFLFFFLFSSTTSVFAQPIPGSTNTSPRTTRDGFKVVDDVLEEESCG- 60

Query: 84  IGEEYCLMRKTLAAHADYIYTDKQKP 110
           IGEE+CLMRKTLAAHADYIYTDKQ+P
Sbjct: 61  IGEEHCLMRKTLAAHADYIYTDKQRP 85

BLAST of Sed0023507 vs. NCBI nr
Match: XP_022941982.1 (phytosulfokines-like [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-27
Identity = 67/86 (77.91%), Postives = 75/86 (87.21%), Query Frame = 0

Query: 24  MSSKLLTTIFTFLFLFFFLSSLTIAAVARPVPDSSNTSPRTARDGFKVVDDVLEEESCDE 83
           M+SKL+T+IFTFLFLFFFL S T +  ARP+P S+N SP T RDGFKVVDDVLEEESC  
Sbjct: 1   MASKLVTSIFTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESCG- 60

Query: 84  IGEEYCLMRKTLAAHADYIYTDKQKP 110
           IGEE+CLMRKTLAAHADYIYTDKQ+P
Sbjct: 61  IGEEHCLMRKTLAAHADYIYTDKQRP 85

BLAST of Sed0023507 vs. NCBI nr
Match: XP_022984884.1 (phytosulfokines-like [Cucurbita maxima])

HSP 1 Score: 124.4 bits (311), Expect = 6.0e-25
Identity = 74/118 (62.71%), Postives = 83/118 (70.34%), Query Frame = 0

Query: 2   MLVPFALKFQNCPFTISYKA---------TSMSSKLLTTIFTFLFLFF-FLSSL-TIAAV 61
           MLV F LKFQ CP TI   +         + M+ KLLT+IFTFLFLFF F+SS+ TI A 
Sbjct: 6   MLVTFGLKFQFCPSTIPLYSFPVLLLPHFSHMAPKLLTSIFTFLFLFFSFVSSVTTIGAR 65

Query: 62  ARPVPDSSNTSPRTARDGFKVVDDVLEEESCDEIGEEYCLMRKTLAAHADYIYTDKQK 109
             PVP  SN  P T+RD  K  DD LEEESC+EIGEEYCLMRKTLAAHADYIYTD Q+
Sbjct: 66  PVPVPGFSNAFPGTSRDELKAGDDALEEESCEEIGEEYCLMRKTLAAHADYIYTDSQR 123

BLAST of Sed0023507 vs. NCBI nr
Match: XP_022149343.1 (phytosulfokines-like [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 65/88 (73.86%), Postives = 67/88 (76.14%), Query Frame = 0

Query: 24  MSSKLLTTIFTF--LFLFFFLSSLTIAAVARPVPDSSNTSPRTARDGFKVVDDVLEEESC 83
           M+SKLLTT FTF  LF FFF SSL I   ARPVPD  N  P T R G KVVDDVLEEESC
Sbjct: 1   MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60

Query: 84  DEIGEEYCLMRKTLAAHADYIYTDKQKP 110
             IGEEYCLMRKTLAAH DYIYTD Q+P
Sbjct: 61  GGIGEEYCLMRKTLAAHLDYIYTDNQEP 88

BLAST of Sed0023507 vs. NCBI nr
Match: KAG7014931.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 24  MSSKLLTTIFTFLFLFF-FLSS-LTIAAVARPVPDSSNTSPRTARDGFKVVDDVLEEESC 83
           M+SKLLT+IFTFLFLFF F+SS  TI A   PVP  SN  P T+RDG K  DD LEEESC
Sbjct: 1   MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 84  DEIGEEYCLMRKTLAAHADYIYTDKQK 109
           +EIGEEYCLMRKTLAAHADYIYTD Q+
Sbjct: 61  EEIGEEYCLMRKTLAAHADYIYTDSQR 87

BLAST of Sed0023507 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.3e-09
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 24  MSSKLLTTIFTFLFLFFFLSSLTIAAVARPVPDSSNTSPRTARDGFKVVDDVLEEESCDE 83
           MSSK +T     L L   L SL++A  ARP+  + +T          V+ + + +E+C+ 
Sbjct: 1   MSSKAIT-----LLLIALLFSLSLAQAARPLQPADSTK------SVHVIPEKVHDEACEG 60

Query: 84  IGEEYCLMRKTLAAHADYIYTDKQKP 110
           +GEE CLMR+TL AH DYIYT    P
Sbjct: 61  VGEEECLMRRTLTAHVDYIYTQDHNP 75

BLAST of Sed0023507 vs. ExPASy Swiss-Prot
Match: Q9M2Y0 (Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-07
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 33  FTFLFLFFFLSSLTIAAVARPVPDSSNTSPRTARDGFKVVD-DVLEEESCDEIGEEYCLM 92
           FT +F+   L   T+   AR  P  + T+  +  +  K ++ D +EEESC+ IGEE CL+
Sbjct: 4   FTTIFIMALLLCSTLTYAARLTP--TTTTALSRENSVKEIEGDKVEEESCNGIGEEECLI 63

Query: 93  RKTLAAHADYIYTDKQKP 110
           R++L  H DYIYT   KP
Sbjct: 64  RRSLVLHTDYIYTQNHKP 79

BLAST of Sed0023507 vs. ExPASy Swiss-Prot
Match: Q9SZG4 (Putative phytosulfokines 4 OS=Arabidopsis thaliana OX=3702 GN=PSK4 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.9e-04
Identity = 30/84 (35.71%), Postives = 44/84 (52.38%), Query Frame = 0

Query: 29  LTTIFTFLFLFFFLSSLTIAAVARPVP---DSSNTSPRTARDGFKVVDDVLEE---ESCD 88
           +  + T + +   L +  +   ARP P    S  TSP       ++++  L E   ESCD
Sbjct: 1   MANLSTLITIALLLCATMLTCSARPEPAYFASFTTSPADTL-SLEMIESKLHEVAGESCD 60

Query: 89  EIGEEYCLMRKTLAAHADYIYTDK 107
           +  +E CL+R+TL AH DYIYT K
Sbjct: 61  KEDDEDCLVRRTLTAHLDYIYTHK 83

BLAST of Sed0023507 vs. ExPASy TrEMBL
Match: A0A6J1FNZ6 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447189 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.1e-27
Identity = 67/86 (77.91%), Postives = 75/86 (87.21%), Query Frame = 0

Query: 24  MSSKLLTTIFTFLFLFFFLSSLTIAAVARPVPDSSNTSPRTARDGFKVVDDVLEEESCDE 83
           M+SKL+T+IFTFLFLFFFL S T +  ARP+P S+N SP T RDGFKVVDDVLEEESC  
Sbjct: 1   MASKLVTSIFTFLFLFFFLFSSTTSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESCG- 60

Query: 84  IGEEYCLMRKTLAAHADYIYTDKQKP 110
           IGEE+CLMRKTLAAHADYIYTDKQ+P
Sbjct: 61  IGEEHCLMRKTLAAHADYIYTDKQRP 85

BLAST of Sed0023507 vs. ExPASy TrEMBL
Match: A0A6J1JBS4 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111483027 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 74/118 (62.71%), Postives = 83/118 (70.34%), Query Frame = 0

Query: 2   MLVPFALKFQNCPFTISYKA---------TSMSSKLLTTIFTFLFLFF-FLSSL-TIAAV 61
           MLV F LKFQ CP TI   +         + M+ KLLT+IFTFLFLFF F+SS+ TI A 
Sbjct: 6   MLVTFGLKFQFCPSTIPLYSFPVLLLPHFSHMAPKLLTSIFTFLFLFFSFVSSVTTIGAR 65

Query: 62  ARPVPDSSNTSPRTARDGFKVVDDVLEEESCDEIGEEYCLMRKTLAAHADYIYTDKQK 109
             PVP  SN  P T+RD  K  DD LEEESC+EIGEEYCLMRKTLAAHADYIYTD Q+
Sbjct: 66  PVPVPGFSNAFPGTSRDELKAGDDALEEESCEEIGEEYCLMRKTLAAHADYIYTDSQR 123

BLAST of Sed0023507 vs. ExPASy TrEMBL
Match: A0A6J1D6J2 (Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111017778 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.5e-25
Identity = 65/88 (73.86%), Postives = 67/88 (76.14%), Query Frame = 0

Query: 24  MSSKLLTTIFTF--LFLFFFLSSLTIAAVARPVPDSSNTSPRTARDGFKVVDDVLEEESC 83
           M+SKLLTT FTF  LF FFF SSL I   ARPVPD  N  P T R G KVVDDVLEEESC
Sbjct: 1   MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60

Query: 84  DEIGEEYCLMRKTLAAHADYIYTDKQKP 110
             IGEEYCLMRKTLAAH DYIYTD Q+P
Sbjct: 61  GGIGEEYCLMRKTLAAHLDYIYTDNQEP 88

BLAST of Sed0023507 vs. ExPASy TrEMBL
Match: A0A0A0KY18 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 63/87 (72.41%), Postives = 67/87 (77.01%), Query Frame = 0

Query: 24  MSSKLLTTIFTFLFLF-FFLSSLTIAAVARPVPDSSNTSPRTARDGFKVVDDVLEEESCD 83
           M+SKL T+I+ FLFLF FF SS T    ARPVP  SN    T+RDG  V DDVLEEESCD
Sbjct: 1   MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESCD 60

Query: 84  EIGEEYCLMRKTLAAHADYIYTDKQKP 110
           EIGEEYCLMRKTLAAH DYIYTD QKP
Sbjct: 61  EIGEEYCLMRKTLAAHVDYIYTDTQKP 87

BLAST of Sed0023507 vs. ExPASy TrEMBL
Match: A0A6J1E4U5 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111430788 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 24  MSSKLLTTIFTFLFLFF-FLSS-LTIAAVARPVPDSSNTSPRTARDGFKVVDDVLEEESC 83
           M+SKLLT+IFTFLFLFF F+SS  TI A   PVP  SN  P T+RDG K  DD LEEESC
Sbjct: 1   MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 84  DEIGEEYCLMRKTLAAHADYIYTDKQK 109
           +EIGEEYCLMRKTLAAHADYIYTD Q+
Sbjct: 61  EEIGEEYCLMRKTLAAHADYIYTDSQR 87

BLAST of Sed0023507 vs. TAIR 10
Match: AT3G49780.1 (phytosulfokine 4 precursor )

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 33  FTFLFLFFFLSSLTIAAVARPVPDSSNTSPRTARDGFKVVD-DVLEEESCDEIGEEYCLM 92
           FT +F+   L   T+   AR  P  + T+  +  +  K ++ D +EEESC+ IGEE CL+
Sbjct: 4   FTTIFIMALLLCSTLTYAARLTP--TTTTALSRENSVKEIEGDKVEEESCNGIGEEECLI 63

Query: 93  RKTLAAHADYIYTDKQKP 110
           R++L  H DYIYT   KP
Sbjct: 64  RRSLVLHTDYIYTQNHKP 79

BLAST of Sed0023507 vs. TAIR 10
Match: AT4G37720.1 (phytosulfokine 6 precursor )

HSP 1 Score: 44.7 bits (104), Expect = 5.6e-05
Identity = 30/84 (35.71%), Postives = 44/84 (52.38%), Query Frame = 0

Query: 29  LTTIFTFLFLFFFLSSLTIAAVARPVP---DSSNTSPRTARDGFKVVDDVLEE---ESCD 88
           +  + T + +   L +  +   ARP P    S  TSP       ++++  L E   ESCD
Sbjct: 1   MANLSTLITIALLLCATMLTCSARPEPAYFASFTTSPADTL-SLEMIESKLHEVAGESCD 60

Query: 89  EIGEEYCLMRKTLAAHADYIYTDK 107
           +  +E CL+R+TL AH DYIYT K
Sbjct: 61  KEDDEDCLVRRTLTAHLDYIYTHK 83

BLAST of Sed0023507 vs. TAIR 10
Match: AT2G22860.1 (phytosulfokine 2 precursor )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 0

Query: 46  TIAAVARPVPDSSNTSPRTARDGFKV-------VDDV-LEEESCDEIGEEYCLMRKTLAA 105
           T+   ARP P + + S  TA D   +       +DD+ + +E+C    +E CLMR+TL A
Sbjct: 17  TLMCTARPEP-AISISITTAADPCNMEKKIEGKLDDMHMVDENCG-ADDEDCLMRRTLVA 76

Query: 106 HADYIYTDKQK 109
           H DYIYT K+K
Sbjct: 77  HTDYIYTQKKK 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6600274.15.8e-2879.07Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022941982.16.4e-2777.91phytosulfokines-like [Cucurbita moschata][more]
XP_022984884.16.0e-2562.71phytosulfokines-like [Cucurbita maxima][more]
XP_022149343.11.3e-2473.86phytosulfokines-like [Momordica charantia][more]
KAG7014931.11.6e-2273.56Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Q9FS106.3e-0940.70Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1[more]
Q9M2Y02.0e-0741.03Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2[more]
Q9SZG47.9e-0435.71Putative phytosulfokines 4 OS=Arabidopsis thaliana OX=3702 GN=PSK4 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1FNZ63.1e-2777.91Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447189 PE=3 SV=1[more]
A0A6J1JBS42.9e-2562.71Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111483027 PE=3 SV=1[more]
A0A6J1D6J26.5e-2573.86Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111017778 PE=3 SV=1[more]
A0A0A0KY181.0e-2272.41Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=3 SV=1[more]
A0A6J1E4U51.0e-2273.56Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111430788 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G49780.11.4e-0841.03phytosulfokine 4 precursor [more]
AT4G37720.15.6e-0535.71phytosulfokine 6 precursor [more]
AT2G22860.11.3e-0440.85phytosulfokine 2 precursor [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009438PhytosulfokinePFAMPF06404PSKcoord: 74..108
e-value: 6.3E-10
score: 39.9
IPR009438PhytosulfokinePANTHERPTHR33285PHYTOSULFOKINES 3coord: 24..109
NoneNo IPR availablePANTHERPTHR33285:SF1PHYTOSULFOKINES 3coord: 24..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023507.1Sed0023507.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
biological_process GO:0008283 cell population proliferation
biological_process GO:0007165 signal transduction
cellular_component GO:0005576 extracellular region
molecular_function GO:0008083 growth factor activity