Sed0023465 (gene) Chayote v1

Overview
NameSed0023465
Typegene
OrganismSechium edule (Chayote v1)
DescriptionProlamin_like domain-containing protein
LocationLG05: 1687789 .. 1688727 (-)
RNA-Seq ExpressionSed0023465
SyntenySed0023465
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACAAAGGCAACGAGGACCCAGACCAGGCACCAGGAGATATCGAAAGAGTAATGTCAAATCTCGAACCTGAGACCTTGAAGAGAGCATACCCTCAAAACTTAAGTCTTCAACCACCATGTCATCCCTCTCAAGATCAGAGTTGAGCTATCAGTTCACTGTTTTCCTTAGGCATACAAAAATATTTGAGCAATTAAAGACGCAACGACGGAAGGAACAAACGTAAGAACGTGAAATTCAGCCAAAAGGCGAAACCGAAACCAAACGAGAAAGTGTTGAAAGACATTAAAACTTGCAGAAACGAAACTCATCGGCACGAATTGAATGCAATCGCAACCAGCAGAGAAGAATTAAACCAAACGCACAAAACGAAACAGAATCCATATCCAATTTCATATATAAAACACACCAAATCGAAGAAGGCGTACCAGTTCAATCGAGGATCACAGGAGGAGATCGAGATAAGATCTGAAGATGCCGAACTCGGTTCCCAAAATCGTCTCCCTCCTCTTTGCCCTAGCGATTTCGTCGCCGATTCGATCGGCGTTCGCTCTCGGAATGACTCCGGATGCGGCCTGTTGGAGTGCGATTAAGGCGGTGGGAGGTTGCCAGGACGAGATCGAGACGGCGATGAAGAGGAATGAGATCGAGGTGAGTTATGGTTGTTGCAGAGTGATAATGTATGGACTGCCGGAGAGATGTGCCGCCGTGGTTTTCTCGTCTGGCGGCGAGTTTTCGCCGGAGATTGGCGGCGCGGTGAAGGAATATTGCGACGGAATGGGAGTTACTCCGCCGGTGCTCGAAGAGGATGATAAGGTTGAAGAAAATTGAGTGTTGAATACTTCGTGATTTTGTTTTACATTTATATTTAAATGAAATGTAAGTGTAAGTGCATATACTATGCTCTAACACAAAGTATGCATTATATCTTACCAGTGA

mRNA sequence

GAAACAAAGGCAACGAGGACCCAGACCAGGCACCAGGAGATATCGAAAGAGTAATGTCAAATCTCGAACCTGAGACCTTGAAGAGAGCATACCCTCAAAACTTAAGTCTTCAACCACCATGTCATCCCTCTCAAGATCAGAGTTGAGCTATCAGTTCACTGTTTTCCTTAGGCATACAAAAATATTTGAGCAATTAAAGACGCAACGACGGAAGGAACAAACGTAAGAACGTGAAATTCAGCCAAAAGGCGAAACCGAAACCAAACGAGAAAGTGTTGAAAGACATTAAAACTTGCAGAAACGAAACTCATCGGCACGAATTGAATGCAATCGCAACCAGCAGAGAAGAATTAAACCAAACGCACAAAACGAAACAGAATCCATATCCAATTTCATATATAAAACACACCAAATCGAAGAAGGCGTACCAGTTCAATCGAGGATCACAGGAGGAGATCGAGATAAGATCTGAAGATGCCGAACTCGGTTCCCAAAATCGTCTCCCTCCTCTTTGCCCTAGCGATTTCGTCGCCGATTCGATCGGCGTTCGCTCTCGGAATGACTCCGGATGCGGCCTGTTGGAGTGCGATTAAGGCGGTGGGAGGTTGCCAGGACGAGATCGAGACGGCGATGAAGAGGAATGAGATCGAGGTGAGTTATGGTTGTTGCAGAGTGATAATGTATGGACTGCCGGAGAGATGTGCCGCCGTGGTTTTCTCGTCTGGCGGCGAGTTTTCGCCGGAGATTGGCGGCGCGGTGAAGGAATATTGCGACGGAATGGGAGTTACTCCGCCGGTGCTCGAAGAGGATGATAAGGTTGAAGAAAATTGAGTGTTGAATACTTCGTGATTTTGTTTTACATTTATATTTAAATGAAATGTAAGTGTAAGTGCATATACTATGCTCTAACACAAAGTATGCATTATATCTTACCAGTGA

Coding sequence (CDS)

ATGCCGAACTCGGTTCCCAAAATCGTCTCCCTCCTCTTTGCCCTAGCGATTTCGTCGCCGATTCGATCGGCGTTCGCTCTCGGAATGACTCCGGATGCGGCCTGTTGGAGTGCGATTAAGGCGGTGGGAGGTTGCCAGGACGAGATCGAGACGGCGATGAAGAGGAATGAGATCGAGGTGAGTTATGGTTGTTGCAGAGTGATAATGTATGGACTGCCGGAGAGATGTGCCGCCGTGGTTTTCTCGTCTGGCGGCGAGTTTTCGCCGGAGATTGGCGGCGCGGTGAAGGAATATTGCGACGGAATGGGAGTTACTCCGCCGGTGCTCGAAGAGGATGATAAGGTTGAAGAAAATTGA

Protein sequence

MPNSVPKIVSLLFALAISSPIRSAFALGMTPDAACWSAIKAVGGCQDEIETAMKRNEIEVSYGCCRVIMYGLPERCAAVVFSSGGEFSPEIGGAVKEYCDGMGVTPPVLEEDDKVEEN
Homology
BLAST of Sed0023465 vs. NCBI nr
Match: KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 5.9e-34
Identity = 77/112 (68.75%), Postives = 91/112 (81.25%), Query Frame = 0

Query: 12  LFALAISSPIRSAFALGMTPDAA----CWSAIKAVGGCQDEIETAMKRNEIEVSYGCCRV 71
           L ALAISS  +SAFA+    +A     CW AI AV GCQ++I+TAMK NEIEVSY CC+V
Sbjct: 12  LCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKV 71

Query: 72  IMYGLPERCAAVVFSSGGEFSPEIGGAVKEYCDGMGVTPPVLE-EDDKVEEN 119
           I++G+PE+CAAVVFSSGGEFSPE+ GAV EYCDGMG+TPPVLE ED KV+EN
Sbjct: 72  ILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKVDEN 123

BLAST of Sed0023465 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-30
Identity = 75/118 (63.56%), Postives = 85/118 (72.03%), Query Frame = 0

Query: 7   KIVSLLFALAISSPIR--SAFALGMTPD---------AACWSAIKAVGGCQDEIETAMKR 66
           + V  L ALAISS I+  SAFAL   P+         A CW AI AV GCQDEI+ AMK 
Sbjct: 6   RFVGFLLALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEIDMAMKS 65

Query: 67  NEIEVSYGCCRVIMYGLPERCAAVVFSSGGEFSPEIGGAVKEYCDGMGVTPPVLEEDD 114
           NEIEVS  CCR I++GLP++CAA VFSSGGEFS EI GAV EYCDGMG+TPPVLE D+
Sbjct: 66  NEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVLETDE 123

BLAST of Sed0023465 vs. NCBI nr
Match: KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-28
Identity = 74/118 (62.71%), Postives = 81/118 (68.64%), Query Frame = 0

Query: 1   MPNSVPKIVSLLFALAISSPIRSAFALGMTP---------DAACWSAIKAVGGCQDEIET 60
           M  SV      L AL ISS I SAFAL   P          AAC  A+ AV GCQ EI+ 
Sbjct: 1   MSKSVRFFGFFLLALTISSLIHSAFALRKFPKAIDSADWSTAACLDALNAVEGCQGEIDM 60

Query: 61  AMKRNEIEVSYGCCRVIMYGLPERCAAVVFSSGGEFSPEIGGAVKEYCDGMGVTPPVL 110
           A+  NEIEVSY CCRVI++GLPE+CAAVVFSSGGE S EI GAVKEYCDGMG+TPPVL
Sbjct: 61  AINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118

BLAST of Sed0023465 vs. NCBI nr
Match: KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 47/61 (77.05%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 59  EVSYGCCRVIMYGLPERCAAVVFSSGGEFSPEIGGAVKEYCDGMGVTPPVLE-EDDKVEE 118
           +VSY CC+VI++G+PE+CAAVVFSSGGEFSP++ GAV EYCDGMG+TPPVLE ED KVEE
Sbjct: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65

BLAST of Sed0023465 vs. ExPASy TrEMBL
Match: A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.8e-34
Identity = 77/112 (68.75%), Postives = 91/112 (81.25%), Query Frame = 0

Query: 12  LFALAISSPIRSAFALGMTPDAA----CWSAIKAVGGCQDEIETAMKRNEIEVSYGCCRV 71
           L ALAISS  +SAFA+    +A     CW AI AV GCQ++I+TAMK NEIEVSY CC+V
Sbjct: 12  LCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSNEIEVSYDCCKV 71

Query: 72  IMYGLPERCAAVVFSSGGEFSPEIGGAVKEYCDGMGVTPPVLE-EDDKVEEN 119
           I++G+PE+CAAVVFSSGGEFSPE+ GAV EYCDGMG+TPPVLE ED KV+EN
Sbjct: 72  ILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKVDEN 123

BLAST of Sed0023465 vs. ExPASy TrEMBL
Match: A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 79/123 (64.23%), Postives = 91/123 (73.98%), Query Frame = 0

Query: 1   MPNSVPKIVSLLFALAISSPIRSAFALGMTPDAA----CWSAIKAVGGCQDEIETAMKRN 60
           M  SV      L  LA SS   SAFA+    +A     CW AI AV GCQ+EI+TAMK N
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60

Query: 61  EIEVSYGCCRVIMYGLPERCAAVVFSSGGEFSPEIGGAVKEYCDGMGVTPPVLE-EDDKV 119
           EIEVSY CC+VI++G+PE+CAAVVFSSGGEFSP++ GAV EYCDGMG+TPPVLE ED KV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120

BLAST of Sed0023465 vs. ExPASy TrEMBL
Match: A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 75/118 (63.56%), Postives = 85/118 (72.03%), Query Frame = 0

Query: 7   KIVSLLFALAISSPIR--SAFALGMTPD---------AACWSAIKAVGGCQDEIETAMKR 66
           + V  L ALAISS I+  SAFAL   P+         A CW AI AV GCQDEI+ AMK 
Sbjct: 6   RFVGFLLALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEIDMAMKS 65

Query: 67  NEIEVSYGCCRVIMYGLPERCAAVVFSSGGEFSPEIGGAVKEYCDGMGVTPPVLEEDD 114
           NEIEVS  CCR I++GLP++CAA VFSSGGEFS EI GAV EYCDGMG+TPPVLE D+
Sbjct: 66  NEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVLETDE 123

BLAST of Sed0023465 vs. ExPASy TrEMBL
Match: A0A7J0HBY1 (Prolamin_like domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_28g0013320 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-04
Identity = 29/82 (35.37%), Postives = 44/82 (53.66%), Query Frame = 0

Query: 25  FALGMTPDAACWSAIKAVGGCQDEIETAMKRNEIEVSYGCCRVIMYGLPERCAAVVFSSG 84
           F++   P   C   +K + GCQD++++  K    E+   CCR I  G+ + C  +VFSS 
Sbjct: 37  FSIPKPPIIDCVRNMKRLKGCQDQLQSLFKHKPTELVPECCRAIT-GMSDYCMKLVFSS- 96

Query: 85  GEFSPEIGGAVKEYCDGMGVTP 107
             FS   G AVK+ C+ +G  P
Sbjct: 97  -SFSLSFGNAVKKLCNVLGYGP 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0038539.15.9e-3468.75hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136... [more]
XP_022931003.13.0e-3063.56uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet... [more]
KAG6571831.12.8e-2862.71hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652857.13.1e-1977.05hypothetical protein Csa_023774, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TB282.8e-3468.75Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A0A0LEG01.8e-3364.23Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040... [more]
A0A6J1EX441.5e-3063.56uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373... [more]
A0A7J0HBY16.8e-0435.37Prolamin_like domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_28g00... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 35..100
e-value: 1.2E-7
score: 31.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023465.1Sed0023465.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity