Sed0023347 (gene) Chayote v1

Overview


Name	Sed0023347
Type	gene
Organism	Sechium edule (Chayote v1)
Description	U2 small nuclear ribonucleoprotein B
Location	LG01: 9002799 .. 9007051 (-)
RNA-Seq Expression	Sed0023347
Synteny	Sed0023347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACATTTGCTTGCTAGGGCTCTAACAGCCTCTGCATTGTCTCCTTCCCTGCACATTCGAAAAATCAGATTTATGTCCATAGCTCCGCGATTCTCTGCAAGTCGAAGGCGCTGAACGTGAACAACCACCATGTTGTCGGGTGATATACCGCCTAACCAGTCCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAACAAGGTGACTCACTCTTAGTTTTTCGATTTACTCTTTTGTAAATGGTTTTTCCCCTGTTGATTAAGTATACAGATTACGGAATTGAACTGATTTTCTCGCCTTTTTATCATCGCCATTTCCTTTGGCTCTCTAAATTCGTGCTTCTTTTGCTTATTTGGGTGTTATTTGGGCGAAGTTTGGCTTGCATTTGTTGTTTCAGTTCTAAATTTTTCTGATGATGCTGTTCGATAATTACTCGAGAGTCTAGAAAATAGTTGGAGTTTGGTTTTTAGGGTGCACGGCGTGATGGCATAAATTTTTAGTTTGGATATGGAGACGGCTACTTGCTAATGTACCTGTTCCAGTAGGGTTTAGGGTTTTGTTTACTCTCTTAGTTACCTAATGTTTAGTTATTTACAAAGTTACATCACAGTGGTGCGGGATTCAATCATTTGCTTTTTAGTGTTTGGATTTGATGGTATACTAATTTTCTCCTGTTGTACAGAATTGAAGAGATCGCTTTATGCTTTGTTTTCTCAATATGGAAGGATACTCGATGTCGTTGCCTTGAAGACCCCGAGGCTTAGAGGGCAAGCATGGGTAGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTATGGTTGGTTTCTAGCTTATCACATTTTATGAACTTGATTTTCACAGTCTATTTCTGGCCTTTTTTCTATGGACATTCTAGTGCACTTTGAACTTCTTTAGGACTTAGGTAACTGTGGATAGTTTGCTTGTCAATGGGATTGGATCCCGAATGTGTTTCGATGAGTGTTATGTGGAGAGTTTCCTGTGTATGTGTATATATATACACGTATATATACATATCAGATGCCATCTCACATTTTCAAAGCAGGCAAGCAAGATCCTCGGCTGCTTTCCTAGGCCTCATCAACACTGTTTGTCTCACACTTTCTAAGATGTTAATCTTGCCATGGAGAACCTGCCTAGTGTTTTAAAAAGCCCAAGGCGCACTAAGGTGGAATGGGCCTCTGGGGCCTGAGGCGTAAGGCGCACCATAAGGTGCAGGTTTTTTTACACAAGGTGCACTATATAATAAAACATAAATTTATATATATATATATGTGTGTGTGTGTACACACAATAAAAACATTTCCATAGACATAAATGTAATTTTACCAAGAATAATATACAAAAAATACATTACATTTAACTATTAACCTTCATTTCATGGAAAGAAATGAAGTTTAACTAAGAATATATACAAAACATACATAAGAGTCAACTATTAACCTTTCATTTAAGCTAATGTTGTCTTTGTGAGTTGAAGAATTAAGTTATTTAAGGTATTGAAATGTCTTGAATAAGTTATCTTGCGCTTTGAATGACCTAGTACATGGATTTCACAAAGGATAAAGGTGAAAACATGAAAGAATACAAAGAAAATGAAAAAGCCCACAAGGTGTGCACCTTTTGGCGCCTGGGGCTTCATGTAAGGCGCCAAAAGGCGTGCGCCTGAAGGGGCTTTTTAAAACACTGAACCTGCCAAATGAAGAACTTCACTTTCGTGGAAATTTTCACCCTCCATAAATCCACAAAGATAATCCCCTTAAGAGGAAGTGGACGGAAGGTCCACCAGATAACAAAAGGAGCAACATGTGAAGCCCTCGAAAGGGTTATGAAACCAATAACGGATGGCTGTATGCCTTTACATTTTGAGATCTCTCTTTGTAACCCCTGTCTATTTACTTTTCTTCTGTCAATATATGCCATTGTACTTATGTGCTGCTTAAAATGTTGACACTCTGGATCTTTGATTTTGATTGTGAACTAATGCTCAAAGGGAATTAAGCATAGATGTATCCATGGTTTTATTAGGACGAAACAAGTATTGTATTACTATTATTTCCTTTTTTTAAAAAAAAACAGATATTAGTTGTTTCATCTTAAAATCTCCTCTATGTTGACCATTCATACAATGCTCTGATATTGAATGTATAGCAATATAGATGACTTTACGTTGCCTATCGCTAATATTAGATGACTTTCTTTATTGTTACTTTTTGGAGAGAATTCAATATGCCAAAGGCAAATCAGATTGTGTTGCTGTAGCTGATGGAAGCTATGTACCAAGGGAGAAGAAAAAGAAGCAAGAAGAAAAAGGTGATTGTCATTATAAGTACTCTTTCTAAATATTTCCTTCGAACTTTTTTGGTTTACATAATCTTGAATTTGGCGGATGGACAGTCATAATTTCACCTTGACAAACATATGGTTTTTTTAAAGATCATAAGGTTTTTGAACTGGTTTATATTTCTTATTATCTTTTAATTTGCTTATCCAGCCGAAAGAAAGCGACATGCTGAAGAAGCACACCAGACTGCGATGCCCAATGGAAAAACCACTGAGAATGGAGGTTCAAATGTAAGTTTCTTTTCACTCTTACATTTTATTGCGATGTAAAATTTTTATTCCATTCTTCGTAGAGCTGGATCATATTAATTGGTACTCTAGAAGTGGCCCTGAGTAGAAATTTTATGAGTCACTTTGAATGACATGGTTCTCTGGTTAATTTTTTTTCCCTTCTCATTTGTTTCAAAGGCATTGATGTCGATTCCAACTAGATTTCACGTTAGTGGCCATTAAATCAGGCAGTATTAAATTCTTTTTCATAATCACTTTTGCTTAGAAAGCCTCTTCGTTGTATACAGGCCACATTCCGCAATGCAAATTCAAGCGCTCCAGAAGCTGCTCCAAACAACATCCTGTTTATTGAGAATTTACCTCATGAAACTTCTAGTATGATGTTGCAAGTCCTTTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCAGGTATTGCTTTTGTCGAGTTTGAAGACGATGTTCAATCCTCTATGGCGATGCAGGCTCTACAGGGCTTTAAAATTGACCCACAACATCCAATGGCTATCTCCTTTGCTAAGAAGTAACTCAACCTTTGTTCTATTGTTAGTTTCCATGTAGCGTGCAACAGGTTTATGTTAATGCCGGAGCATATAATACGAGTCGGGAGTTTTCACGGAAAGTTCAGACATCCTTCCCCTCCTTCTAAGGAACAAAAGAGAACGAAAGAATTAAAACATTGGAGATCCAAAAGAGGAGGATATCAAACCAAGGGACCAGATGAGTTTTTCTAGGTTTGCTAATTCCAGTTTCCAGTTGTAGGTAAAAATAGTGTTGAAAAGAAGACAGGGAGCTGAAATTTAGGATACATTGTTGATTAAATTTTTGCATGAATATTCCGTCAACATTTATTGTTGATAATCATTTATGTCAAGTCTCAGGAACGGTGCCGCTCGGTGCGTGTATTTTCTTCAACTGGTCGACTGTGAGCAAGATTTGACCCATATTTGGTTTGAAAATTAAGGCTTTTACTAGATCAAATGTTCTGTCATTGCTTGTTGGACCATAATGTTCTTTTATGTCACAGGGATCAGTGTTCTTCAAGTGCTGACTGCTGACCATTGAGATTTTATTATTATTATTTTTATAATAATAACATAAATATTACTACACATTCTTGTTTTTGAAACAAAGATAATTACGCCCGTCTCTAGGCCAAGCATCAGAGACATCGAAGGAATAATGTCAAAGGTGAGTCTCGAACTAGGGACCTTGAGGGGAATAAGCGAAGTCCAAGTCTTCAACTATTGTGCCGCTCTTTGTGGACTACTACGCATTCTTTTGAATATTGTAAGATATCGAAGAGTATCCATGATAAAAAAAATTCCGAAGGAGTGATTTCATGGTAGAAGTGTGGGTCTTTAAAGTATGATTTCTTGTTGATTTAAAGTTCAAAACTTATGATTGAGCTTAATTGTAAAATTGTTTATCTTGAGTTTGAGCTTAGAACGGACCTGGGTCGAGATAAAGTTCTGATTCTTGATTGTCTCAGTTGTAGAAGAAATATAAGATACGGATATAAATTTTAATTGGGTCAGAAAATATGGTTGTTTTCTCTTGTCTTGTTGTTTTGTTTCAAACCCAAC

mRNA sequence

GCACATTTGCTTGCTAGGGCTCTAACAGCCTCTGCATTGTCTCCTTCCCTGCACATTCGAAAAATCAGATTTATGTCCATAGCTCCGCGATTCTCTGCAAGTCGAAGGCGCTGAACGTGAACAACCACCATGTTGTCGGGTGATATACCGCCTAACCAGTCCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAACAAGAATTGAAGAGATCGCTTTATGCTTTGTTTTCTCAATATGGAAGGATACTCGATGTCGTTGCCTTGAAGACCCCGAGGCTTAGAGGGCAAGCATGGGTAGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTATGAGAATTCAATATGCCAAAGGCAAATCAGATTGTGTTGCTGTAGCTGATGGAAGCTATGTACCAAGGGAGAAGAAAAAGAAGCAAGAAGAAAAAGCCGAAAGAAAGCGACATGCTGAAGAAGCACACCAGACTGCGATGCCCAATGGAAAAACCACTGAGAATGGAGGTTCAAATGCCACATTCCGCAATGCAAATTCAAGCGCTCCAGAAGCTGCTCCAAACAACATCCTGTTTATTGAGAATTTACCTCATGAAACTTCTAGTATGATGTTGCAAGTCCTTTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCAGGTATTGCTTTTGTCGAGTTTGAAGACGATGTTCAATCCTCTATGGCGATGCAGGCTCTACAGGGCTTTAAAATTGACCCACAACATCCAATGGCTATCTCCTTTGCTAAGAAGTAACTCAACCTTTGTTCTATTGTTAGTTTCCATGTAGCGTGCAACAGGTTTATGTTAATGCCGGAGCATATAATACGAGTCGGGAGTTTTCACGGAAAGTTCAGACATCCTTCCCCTCCTTCTAAGGAACAAAAGAGAACGAAAGAATTAAAACATTGGAGATCCAAAAGAGGAGGATATCAAACCAAGGGACCAGATGAGTTTTTCTAGGTTTGCTAATTCCAGTTTCCAGTTGTAGGTAAAAATAGTGTTGAAAAGAAGACAGGGAGCTGAAATTTAGGATACATTGTTGATTAAATTTTTGCATGAATATTCCGTCAACATTTATTGTTGATAATCATTTATGTCAAGTCTCAGGAACGGTGCCGCTCGGTGCGTGTATTTTCTTCAACTGGTCGACTGTGAGCAAGATTTGACCCATATTTGGTTTGAAAATTAAGGCTTTTACTAGATCAAATGTTCTGTCATTGCTTGTTGGACCATAATGTTCTTTTATGTCACAGGGATCAGTGTTCTTCAAGTGCTGACTGCTGACCATTGAGATTTTATTATTATTATTTTTATAATAATAACATAAATATTACTACACATTCTTGTTTTTGAAACAAAGATAATTACGCCCGTCTCTAGGCCAAGCATCAGAGACATCGAAGGAATAATGTCAAAGGTGAGTCTCGAACTAGGGACCTTGAGGGGAATAAGCGAAGTCCAAGTCTTCAACTATTGTGCCGCTCTTTGTGGACTACTACGCATTCTTTTGAATATTGTAAGATATCGAAGAGTATCCATGATAAAAAAAATTCCGAAGGAGTGATTTCATGGTAGAAGTGTGGGTCTTTAAAGTATGATTTCTTGTTGATTTAAAGTTCAAAACTTATGATTGAGCTTAATTGTAAAATTGTTTATCTTGAGTTTGAGCTTAGAACGGACCTGGGTCGAGATAAAGTTCTGATTCTTGATTGTCTCAGTTGTAGAAGAAATATAAGATACGGATATAAATTTTAATTGGGTCAGAAAATATGGTTGTTTTCTCTTGTCTTGTTGTTTTGTTTCAAACCCAAC

Coding sequence (CDS)

ATGTTGTCGGGTGATATACCGCCTAACCAGTCCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAACAAGAATTGAAGAGATCGCTTTATGCTTTGTTTTCTCAATATGGAAGGATACTCGATGTCGTTGCCTTGAAGACCCCGAGGCTTAGAGGGCAAGCATGGGTAGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAATTTCCCATTCTATGATAAACCTATGAGAATTCAATATGCCAAAGGCAAATCAGATTGTGTTGCTGTAGCTGATGGAAGCTATGTACCAAGGGAGAAGAAAAAGAAGCAAGAAGAAAAAGCCGAAAGAAAGCGACATGCTGAAGAAGCACACCAGACTGCGATGCCCAATGGAAAAACCACTGAGAATGGAGGTTCAAATGCCACATTCCGCAATGCAAATTCAAGCGCTCCAGAAGCTGCTCCAAACAACATCCTGTTTATTGAGAATTTACCTCATGAAACTTCTAGTATGATGTTGCAAGTCCTTTTCCAACAATATCCTGGATTCAGGGAAGTCCGGATGATTGAAGCAAAGCCAGGTATTGCTTTTGTCGAGTTTGAAGACGATGTTCAATCCTCTATGGCGATGCAGGCTCTACAGGGCTTTAAAATTGACCCACAACATCCAATGGCTATCTCCTTTGCTAAGAAGTAA

Protein sequence

MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHAEEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Homology

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BLAST of Sed0023347 vs. NCBI nr
Match: XP_022154903.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia])

HSP 1 Score: 425.2 bits (1092), Expect = 3.5e-115
Identity = 217/231 (93.94%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IY+KNLNEKVKK+ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK KSDCVA ADGS+VPREKKKKQEEKAERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           E++HQ+AMPNG TTENG SNATFR+AN SAPEAAPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDSHQSAMPNGTTTENGSSNATFRHANPSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Sed0023347 vs. NCBI nr
Match: XP_008457301.1 (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059982.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa] >TYJ97241.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 421.0 bits (1081), Expect = 6.6e-114
Identity = 216/231 (93.51%), Postives = 224/231 (96.97%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKK+ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK KSDCVA ADG++VPREKKKKQEEKAE+KR A
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           EEAHQ+AMPNG TTENGGSNATFR+AN SA EA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Sed0023347 vs. NCBI nr
Match: XP_022949507.1 (U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita maxima] >KAG6607350.1 U2 small nuclear ribonucleoprotein B'', partial [Cucurbita argyrosperma subsp. sororia] >KAG7037025.1 U2 small nuclear ribonucleoprotein B'' [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 420.6 bits (1080), Expect = 8.6e-114
Identity = 216/231 (93.51%), Postives = 221/231 (95.67%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNEKVKK+ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK KSDCVA ADGS+VPREKKKKQEEKAERKR  
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQ+AMPNG T ENGGSNATFR+AN SAPEA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Sed0023347 vs. NCBI nr
Match: XP_004137370.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypothetical protein Csa_013411 [Cucumis sativus])

HSP 1 Score: 420.2 bits (1079), Expect = 1.1e-113
Identity = 215/231 (93.07%), Postives = 223/231 (96.54%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKK+ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK KSDC+A ADGS+VPREKKKKQEEKAE+KR A
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQ+AMPNG TTENGGSNATFR+AN SA EA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Sed0023347 vs. NCBI nr
Match: XP_023525708.1 (U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525709.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.5 bits (1077), Expect = 1.9e-113
Identity = 215/231 (93.07%), Postives = 221/231 (95.67%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNEKVKK+ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK KSDCVA ADGS+VPREKKKKQEEKAERKR  
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           +E HQ+AMPNG T ENGGSNATFR+AN SAPEA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 DETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

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BLAST of Sed0023347 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 4.6e-94
Identity = 177/231 (76.62%), Postives = 200/231 (86.58%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQSIYIK++NEK+KK+ELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK KSD V  A+GS+VP+EKK KQEEK ERKRHA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           EE  Q +MPNG TT+NG     F+   S      PNNILFI NLP ET+SMMLQ+LF+QY
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ--PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Sed0023347 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.1e-87
Identity = 166/234 (70.94%), Postives = 197/234 (84.19%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQSIYI+NLNE++KK+ELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+A A+G++VP++KK+KQEEK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 EEAHQTA---MPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLF 180
            +   TA     NG +  NG    +F+   S      PNNILFI+NLPHET+SMMLQ+LF
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ--PSGQETMPPNNILFIQNLPHETTSMMLQLLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           +QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Sed0023347 vs. ExPASy Swiss-Prot
Match: B8AM21 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 6.0e-86
Identity = 170/233 (72.96%), Postives = 193/233 (82.83%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ++Y++NLNEKVKK+ELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEK-AERKRH 120
           E+TAA+NA R +Q F FY K MR+QYAK KSDC+A  DGS  P+EK+KKQEEK AE+KR 
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 AEEAHQTAMPNGKTTENG-GSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQ 180
           AEEA Q+  PN     NG G  A+     S  P A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Sed0023347 vs. ExPASy Swiss-Prot
Match: Q10MR0 (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.3e-85
Identity = 169/233 (72.53%), Postives = 193/233 (82.83%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ++Y++NLNEKVKK+ELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEK-AERKRH 120
           E+TAA+NA R +Q F FY K MR+QYAK +SDC+A  DGS  P+EK+KKQEEK AE+KR 
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 121 AEEAHQTAMPNGKTTENG-GSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQ 180
           AEEA Q+  PN     NG G  A+     S  P A PNNILFI+NLP ET+SMMLQ+LFQ
Sbjct: 121 AEEAQQSG-PNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 181 QYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           QYPGFREVRMIEAKPGIAFVE+EDD QS +AMQALQGFKI P +PMAIS+AKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of Sed0023347 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.6e-62
Identity = 129/234 (55.13%), Postives = 170/234 (72.65%), Query Frame = 0


Query: 7   PPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAAS 66
           PPN +IYI NLNEK+K +ELK+SL A+FSQ+G+ILDV+A KT + +GQAWV F +V +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 67  NAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHAEEAHQT 126
            A++ MQ+FPF++KPMRIQYAK KSD +A ADG++VPRE++K+ +EK E+K+  E+ H  
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139

Query: 127 AMPNGKTTENGG-------SNATFRNANS-SAPE-AAPNNILFIENLPHETSSMMLQVLF 186
           +          G       S   F  A     PE   PNNILF++NLPHET+ MMLQ+LF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199

Query: 187 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
            QYPGF+EVRM+EAKPGIAFVE+ D+ Q++ AM  LQGFKI   + M IS+AKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of Sed0023347 vs. ExPASy TrEMBL
Match: A0A6J1DLJ9 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Momordica charantia OX=3673 GN=LOC111022049 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.7e-115
Identity = 217/231 (93.94%), Postives = 225/231 (97.40%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IY+KNLNEKVKK+ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYVKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK KSDCVA ADGS+VPREKKKKQEEKAERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKADGSFVPREKKKKQEEKAERKRRA 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           E++HQ+AMPNG TTENG SNATFR+AN SAPEAAPNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EDSHQSAMPNGTTTENGSSNATFRHANPSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Sed0023347 vs. ExPASy TrEMBL
Match: A0A5D3BF51 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00310 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.2e-114
Identity = 216/231 (93.51%), Postives = 224/231 (96.97%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKK+ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK KSDCVA ADG++VPREKKKKQEEKAE+KR A
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           EEAHQ+AMPNG TTENGGSNATFR+AN SA EA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Sed0023347 vs. ExPASy TrEMBL
Match: A0A1S3C564 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC103497024 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.2e-114
Identity = 216/231 (93.51%), Postives = 224/231 (96.97%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           MLSGDIPPNQ+IYIKNLNEKVKK+ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFY+KPMRIQYAK KSDCVA ADG++VPREKKKKQEEKAE+KR A
Sbjct: 61  EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           EEAHQ+AMPNG TTENGGSNATFR+AN SA EA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EEAHQSAMPNGTTTENGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Sed0023347 vs. ExPASy TrEMBL
Match: A0A6J1KA04 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC111493013 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.2e-114
Identity = 216/231 (93.51%), Postives = 221/231 (95.67%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNEKVKK+ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK KSDCVA ADGS+VPREKKKKQEEKAERKR  
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQ+AMPNG T ENGGSNATFR+AN SAPEA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Sed0023347 vs. ExPASy TrEMBL
Match: A0A6J1GC84 (U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452834 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.2e-114
Identity = 216/231 (93.51%), Postives = 221/231 (95.67%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML GDIPPNQ+IYIKNLNEKVKK+ELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS
Sbjct: 1   MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK KSDCVA ADGS+VPREKKKKQEEKAERKR  
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRT 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           EE HQ+AMPNG T ENGGSNATFR+AN SAPEA PNNILFIENLPHETSSMMLQVLFQQY
Sbjct: 121 EETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231

[Close]

BLAST of Sed0023347 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 345.5 bits (885), Expect = 3.3e-95
Identity = 177/231 (76.62%), Postives = 200/231 (86.58%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQSIYIK++NEK+KK+ELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK KSD V  A+GS+VP+EKK KQEEK ERKRHA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           EE  Q +MPNG TT+NG     F+   S      PNNILFI NLP ET+SMMLQ+LF+QY
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQ--PSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of Sed0023347 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 344.4 bits (882), Expect = 7.3e-95
Identity = 176/231 (76.19%), Postives = 200/231 (86.58%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQSIYIK++NEK+KK+ELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAASNAVRQMQNFPFYDKPMRIQYAK KSD V  A+GS+VP+EKK KQEEK ERKRHA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 121 EEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLFQQY 180
           EE  Q +MPNG TT+NG       +   + P   PNNILFI NLP ET+SMMLQ+LF+QY
Sbjct: 121 EETQQPSMPNGATTQNGMPPPFQPSGQDTMP---PNNILFIHNLPIETNSMMLQLLFEQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           PGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Sbjct: 181 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of Sed0023347 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 324.3 bits (830), Expect = 7.8e-89
Identity = 166/234 (70.94%), Postives = 197/234 (84.19%), Query Frame = 0


Query: 1   MLSGDIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
           ML+ DIPPNQSIYI+NLNE++KK+ELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHA 120
           EVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+A A+G++VP++KK+KQEEK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120

Query: 121 EEAHQTA---MPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHETSSMMLQVLF 180
            +   TA     NG +  NG    +F+   S      PNNILFI+NLPHET+SMMLQ+LF
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQ--PSGQETMPPNNILFIQNLPHETTSMMLQLLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 232
           +QYPGF+E+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Sbjct: 181 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of Sed0023347 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 286.2 bits (731), Expect = 2.4e-77
Identity = 148/196 (75.51%), Postives = 167/196 (85.20%), Query Frame = 0


Query: 36  QYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKGKSDCVA 95
           ++GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK KSD V 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 96  VADGSYVPREKKKKQEEKAERKRHAEEAHQTAMPNGKTTENGGSNATFRNANSSAPEAAP 155
            A+GS+VP+EKK KQEEK ERKRHAEE  Q +MPNG TT+NG     F+   S      P
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQNGMPVPPFQ--PSGQDTMPP 126

Query: 156 NNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215
           NNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQG
Sbjct: 127 NNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 186

Query: 216 FKIDPQHPMAISFAKK 232
           FKI PQ+PM +SFAKK
Sbjct: 187 FKITPQNPMVVSFAKK 200

[Close]

BLAST of Sed0023347 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 238.4 bits (607), Expect = 5.6e-63
Identity = 132/244 (54.10%), Postives = 169/244 (69.26%), Query Frame = 0


Query: 5   DIPPNQSIYIKNLNEKVKKQELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTA 64
           ++ PNQ+IYI NLNEKVK  ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 65  ASNAVRQMQNFPFYDKPMRIQYAKGKSDCVAVADGSYVPREKKKKQEEKAERKRHAEEAH 124
           AS A+ +M NFPFYDK MRIQYAK KSD VA ADG++VPREK+K+ EEK   K+  ++ H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 125 QT-----------------AMPNGKTTENGGSNATFRNANSSAPEAAPNNILFIENLPHE 184
            +                 A P  +    GG        N     A PNNILF++NLPHE
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGG-----MKPNMPEAPAPPNNILFVQNLPHE 192

Query: 185 TSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAIS 232
           T+ M+LQ+LF QY GF+EVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI  Q+ M I+
Sbjct: 193 TTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLIT 250

The following BLAST results are available for this feature:

BLAST of Sed0023347 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154903.1	3.5e-115	93.94	U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia]	[more]
XP_008457301.1	6.6e-114	93.51	PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo] >KAA0059...	[more]
XP_022949507.1	8.6e-114	93.51	U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata] >XP_022998346...	[more]
XP_004137370.1	1.1e-113	93.07	U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus] >KGN63915.1 hypotheti...	[more]
XP_023525708.1	1.9e-113	93.07	U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. ...	[more]

BLAST of Sed0023347 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1S6	4.6e-94	76.62	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
O22922	1.1e-87	70.94	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
B8AM21	6.0e-86	72.96	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
Q10MR0	1.3e-85	72.53	U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
A2Y0J7	1.6e-62	55.13	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]

BLAST of Sed0023347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLJ9	1.7e-115	93.94	U2 small nuclear ribonucleoprotein B'' 2-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A5D3BF51	3.2e-114	93.51	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C564	3.2e-114	93.51	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1KA04	4.2e-114	93.51	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GC84	4.2e-114	93.51	U2 small nuclear ribonucleoprotein B'' 2-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Sed0023347 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06960.1	3.3e-95	76.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	7.3e-95	76.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G30260.1	7.8e-89	70.94	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.3	2.4e-77	75.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	5.6e-63	54.10	spliceosomal protein U1A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 104..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..150
None	No IPR available	PANTHER	PTHR10501:SF13	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 4..231
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 4..231
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 12..88 e-value: 5.44386E-50 score: 155.764
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 155..227 e-value: 1.65225E-38 score: 126.529
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 158..227 e-value: 3.6E-10 score: 49.8 coord: 11..85 e-value: 4.8E-12 score: 56.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 12..82 e-value: 5.6E-9 score: 35.7 coord: 159..219 e-value: 2.8E-12 score: 46.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 157..231 score: 13.293717
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 10..89 score: 13.958878
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..121 e-value: 5.4E-30 score: 105.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 145..231 e-value: 5.4E-22 score: 79.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023347.1	Sed0023347.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding