Sed0023256 (gene) Chayote v1

Overview
NameSed0023256
Typegene
OrganismSechium edule (Chayote v1)
DescriptionCYSTM domain-containing protein
LocationLG04: 44433888 .. 44435500 (-)
RNA-Seq ExpressionSed0023256
SyntenySed0023256
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCAACTTCTCATTTCCCACAAATTTATTGACATTATAAACTCTATAAACTCACATTAGTTCACCAATTCCATTCATTTCTTTTTGCTATTCTCAATTTCCCGTACGATCTCCATTTTTGCCATCATGAGCCAATACCAAATTCCAAGTAAGTAAAAAAATGCCACATTGTCATATAGTTTTAAATTGGTACTAGAATTTACTGAACCGCATCGGTTTCGTAATGTTGGTTTGCAGCGGCGGAGGAAGTGAAAGCGTCGAACTCGGGGCCTTTTGTTGCAGCGCCGCCCCCCGTTGGGTACCCGGCGAGAGACGCTCCACAATACCCACACCAAACATTTACACCCCAAACTCAACCTAAAGGAGATGGCTTTTGGAAAGGATGGTAAGTTTTTCTCCTTTTTTATTTTAGTTTACTTTGAACAAAATATAACAAAAGTTTACATCAAGTGTATCTACTTATTTGATACAGGTCCAGTCACATTTTATTATTTTCATTTTTAAAAAAAAAATAAAGAAAAATAAAATGCGGTCTAATTGTGTCACATAAAAAGATAGAACATATCAATATATGGTGTAAACTTTTTTCACAAAGATATTTTTTATAGGAGGATTTGAATTTACAAACTCATGATGAATGATAATGAGTTCATTTTGCAAATTCTTGAAAAGAGATTTCGTCTTTTTTCCTAATTTGGTCGGAATATTTTAAAAAGATTTGGTGTTACTTATATATTGTTTGAAAGTATGTTAAGAATGTATTTTCAAATTTTTTAAAACACTTCTCAATGCTTAAAAAATATGGTTTTGACACTTTTTTTATTTCATACACATTGATCATATGGGTTTATTGATATTTTATGTGTAGTTGTTTTTTTAGTACATTTTAAACATTTTCTCACTTCAACGGTATTTAAAAATTGATGATTCAAACTTTATTATCTCTTGGCTATTGGATGCATATTTATATTGGTTTATTGTTTTGTTAACATTAAAAGTAATATTTAAGTAAAGTGTTTTCTTTGGGTTAATAATTGGAGCATAATTCTTCAATAGCACATTTTGTGTTCTAAATTCTAATAATGGTCAAACCTATATTAGTTGAGGGGCATGTCTTTTACTTAAAAACAGAATATAATTTTAAGAATCTATTGGAAAAAAAACTTTAAGACTACTTAATAAAAATGATGAAGTTTAGAACAGGTCCAATTTAGAAGTCTTTCAATTATTCAAACTTCAATGTTTATGTGAAGTTTTCCAAAATTATACCCTAGTTTCTAAAACAGAAAATCAAACAAAAGTTACAATTAATTTTTGTGTAATTAGTTATTTGTTTTACTAAATAAATTGTGTTGATTTTTGAATGTGTTGTTTGTAGCTGTGCTGCCTTATGTTGCTGCTGGGTATTGGACTGTGTCTTCTAAGGCTGATGGCTAGCTATCTCCATTCTTGCTGAGACTGATTTTATTATTATTATTTTTTTTAGTTTTCATTTATTTATTTTAAATTTCTCTATGTTTGCTATTCTTTTAATGGTGAGGCCATTGTATTTTGGGCCTTTATTCTCTTGTTTTATTGCTATGAATTAGCTTGCCATATTCATTCTTATTCCAT

mRNA sequence

TGCAACTTCTCATTTCCCACAAATTTATTGACATTATAAACTCTATAAACTCACATTAGTTCACCAATTCCATTCATTTCTTTTTGCTATTCTCAATTTCCCGTACGATCTCCATTTTTGCCATCATGAGCCAATACCAAATTCCAACGGCGGAGGAAGTGAAAGCGTCGAACTCGGGGCCTTTTGTTGCAGCGCCGCCCCCCGTTGGGTACCCGGCGAGAGACGCTCCACAATACCCACACCAAACATTTACACCCCAAACTCAACCTAAAGGAGATGGCTTTTGGAAAGGATGCTGTGCTGCCTTATGTTGCTGCTGGGTATTGGACTGTGTCTTCTAAGGCTGATGGCTAGCTATCTCCATTCTTGCTGAGACTGATTTTATTATTATTATTTTTTTTAGTTTTCATTTATTTATTTTAAATTTCTCTATGTTTGCTATTCTTTTAATGGTGAGGCCATTGTATTTTGGGCCTTTATTCTCTTGTTTTATTGCTATGAATTAGCTTGCCATATTCATTCTTATTCCAT

Coding sequence (CDS)

ATGAGCCAATACCAAATTCCAACGGCGGAGGAAGTGAAAGCGTCGAACTCGGGGCCTTTTGTTGCAGCGCCGCCCCCCGTTGGGTACCCGGCGAGAGACGCTCCACAATACCCACACCAAACATTTACACCCCAAACTCAACCTAAAGGAGATGGCTTTTGGAAAGGATGCTGTGCTGCCTTATGTTGCTGCTGGGTATTGGACTGTGTCTTCTAA

Protein sequence

MSQYQIPTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF
Homology
BLAST of Sed0023256 vs. NCBI nr
Match: XP_022989102.1 (cysteine-rich and transmembrane domain-containing protein B-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 7  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWV 66
          P  EEVK SNSGP+VAAPPPVGYP RD PQYPHQTFTPQTQ KGDGFWKGC AALCCCWV
Sbjct: 11 PAVEEVKESNSGPYVAAPPPVGYPVRDGPQYPHQTFTPQTQSKGDGFWKGCVAALCCCWV 70

Query: 67 LDCVF 72
          LDCVF
Sbjct: 71 LDCVF 75

BLAST of Sed0023256 vs. NCBI nr
Match: KAG6589304.1 (hypothetical protein SDJN03_17869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 7  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWV 66
          P  EEVK SNSGP+VAAPPPVGYP RD PQYPHQTFTPQTQ KGDGFWKGC AALCCCWV
Sbjct: 21 PAVEEVKESNSGPYVAAPPPVGYPVRDGPQYPHQTFTPQTQSKGDGFWKGCVAALCCCWV 80

Query: 67 LDCVF 72
          LDCVF
Sbjct: 81 LDCVF 85

BLAST of Sed0023256 vs. NCBI nr
Match: XP_022989101.1 (cysteine-rich and transmembrane domain-containing protein B-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 7  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWV 66
          P  EEVK SNSGP+VAAPPPVGYP RD PQYPHQTFTPQTQ KGDGFWKGC AALCCCWV
Sbjct: 26 PAVEEVKESNSGPYVAAPPPVGYPVRDGPQYPHQTFTPQTQSKGDGFWKGCVAALCCCWV 85

Query: 67 LDCVF 72
          LDCVF
Sbjct: 86 LDCVF 90

BLAST of Sed0023256 vs. NCBI nr
Match: XP_023530417.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 7  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWV 66
          P  EEVK SNSGP+VAAPPPVGYP R+ PQYPHQT TPQTQ KGDGFWKGC AALCCCWV
Sbjct: 21 PAVEEVKESNSGPYVAAPPPVGYPVREGPQYPHQTCTPQTQSKGDGFWKGCVAALCCCWV 80

Query: 67 LDCVF 72
          LDCVF
Sbjct: 81 LDCVF 85

BLAST of Sed0023256 vs. NCBI nr
Match: XP_038888289.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 10 EEVKASNSGPFVAAPPPVGYPARDAPQYPHQT-FTPQTQPKGDGFWKGCCAALCCCWVLD 69
          ++ +  ++GP+VAAPPPVGYP RD PQYPHQT FTPQTQ +GDGFWKGCCAALCCCWVLD
Sbjct: 26 QDNEGKSAGPYVAAPPPVGYPVRDGPQYPHQTNFTPQTQSRGDGFWKGCCAALCCCWVLD 85

Query: 70 CVF 72
          CVF
Sbjct: 86 CVF 88

BLAST of Sed0023256 vs. ExPASy Swiss-Prot
Match: Q8S8M0 (Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis thaliana OX=3702 GN=WIH2 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 6.8e-04
Identity = 24/47 (51.06%), Postives = 26/47 (55.32%), Query Frame = 0

Query: 25 PPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF 72
          P  GYP   APQYP      Q Q    GF +GC AALCCC +LD  F
Sbjct: 53 PQQGYPPPYAPQYPPPP-QHQQQQSSPGFLEGCLAALCCCCLLDACF 98

BLAST of Sed0023256 vs. ExPASy TrEMBL
Match: A0A6J1JEV3 (cysteine-rich and transmembrane domain-containing protein B-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486275 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 7  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWV 66
          P  EEVK SNSGP+VAAPPPVGYP RD PQYPHQTFTPQTQ KGDGFWKGC AALCCCWV
Sbjct: 11 PAVEEVKESNSGPYVAAPPPVGYPVRDGPQYPHQTFTPQTQSKGDGFWKGCVAALCCCWV 70

Query: 67 LDCVF 72
          LDCVF
Sbjct: 71 LDCVF 75

BLAST of Sed0023256 vs. ExPASy TrEMBL
Match: A0A6J1JJ37 (cysteine-rich and transmembrane domain-containing protein B-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486275 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 7  PTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWV 66
          P  EEVK SNSGP+VAAPPPVGYP RD PQYPHQTFTPQTQ KGDGFWKGC AALCCCWV
Sbjct: 26 PAVEEVKESNSGPYVAAPPPVGYPVRDGPQYPHQTFTPQTQSKGDGFWKGCVAALCCCWV 85

Query: 67 LDCVF 72
          LDCVF
Sbjct: 86 LDCVF 90

BLAST of Sed0023256 vs. ExPASy TrEMBL
Match: A0A6J1I2D9 (cysteine-rich and transmembrane domain-containing protein WIH1-like OS=Cucurbita maxima OX=3661 GN=LOC111468396 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 17 SGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF 72
          +GP+VAAPPPVGYP RD P+YPHQT TPQTQ +GDGFWKGCCAALCCCWVLDCVF
Sbjct: 11 AGPYVAAPPPVGYPVRDGPEYPHQTSTPQTQSRGDGFWKGCCAALCCCWVLDCVF 65

BLAST of Sed0023256 vs. ExPASy TrEMBL
Match: A0A0A0K5N8 (CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237300 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 10 EEVKASNSGPFVAAPPPVGYPARDAPQYPHQT-FTPQTQPKGDGFWKGCCAALCCCWVLD 69
          E+ K   SGP+VAAPPPVGYP RD PQYPHQT F  QTQ +GDGFWKGCCAALCCCWVLD
Sbjct: 24 EQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNFDAQTQSRGDGFWKGCCAALCCCWVLD 83

Query: 70 CVF 72
          C+F
Sbjct: 84 CIF 86

BLAST of Sed0023256 vs. ExPASy TrEMBL
Match: A0A5A7USJ3 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00200 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.7e-22
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 10 EEVKASNSGPFVAAPPPVGYPARDAPQYPHQT-FTPQTQPKGDGFWKGCCAALCCCWVLD 69
          E+ K   SGP+VAAPPPVGYP RD PQYPHQT    QTQ +GDGFWKGCCAALCCCWVLD
Sbjct: 24 EQAKEGKSGPYVAAPPPVGYPVRDGPQYPHQTNLDAQTQSRGDGFWKGCCAALCCCWVLD 83

Query: 70 CVF 72
          C+F
Sbjct: 84 CIF 86

BLAST of Sed0023256 vs. TAIR 10
Match: AT3G22240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 177 Blast hits to 177 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 8  TAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVL 67
          + E+   ++SGP+  +PPP+GYP RDA          +T+ KGDGFWKGCCAA+CCC VL
Sbjct: 10 SVEKPSQTSSGPY-TSPPPIGYPTRDAMVGDPPAAAVETKSKGDGFWKGCCAAICCCCVL 69

Query: 68 DCVF 72
          D  F
Sbjct: 70 DACF 72

BLAST of Sed0023256 vs. TAIR 10
Match: AT2G32210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); Has 214 Blast hits to 214 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-10
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 2  SQYQIPTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTF-TPQTQPKGDGFWKGCCAA 61
          SQ Q   A      ++GP+V APPP+GYP  D     H T  T +T+ KGDGF KGC AA
Sbjct: 5  SQNQSSGAYPTPPVSTGPYV-APPPLGYPTNDT---SHATVATVETKSKGDGFLKGCLAA 64

Query: 62 LCCCWVLDCVF 72
          +CCC VLD  F
Sbjct: 65 MCCCCVLDACF 71

BLAST of Sed0023256 vs. TAIR 10
Match: AT2G32190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 218 Blast hits to 218 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 0

Query: 2  SQYQIPTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTP-QTQPKGDGFWKGCCAA 61
          SQ Q   A      ++GP++  PPP+GYP  D     H T  P +T+ KGDGF KGC AA
Sbjct: 5  SQNQSSGAYPTPPVSTGPYM-TPPPLGYPTSD---ISHATVAPVETKSKGDGFLKGCLAA 64

Query: 62 LCCCWVLDCVF 72
          +CCC VLD  F
Sbjct: 65 MCCCCVLDACF 71

BLAST of Sed0023256 vs. TAIR 10
Match: AT1G56060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 180 Blast hits to 180 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 20 FVAAPPPVGYPA--RDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF 72
          +V APPP+GYP   +D+PQ        Q++  G GF +GC AA+CCC VLDCVF
Sbjct: 19 YVTAPPPMGYPVMMKDSPQTVQPPHEGQSKGSG-GFLRGCLAAMCCCCVLDCVF 71

BLAST of Sed0023256 vs. TAIR 10
Match: AT1G05340.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 189 Blast hits to 189 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 21; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 5.1e-07
Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = 0

Query: 24 PPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF 72
          PPP+GYP              +T+ KGDGF+KGC AA+CCC  LD  F
Sbjct: 25 PPPIGYPTNQPSHGSVAQGKVETKSKGDGFFKGCLAAMCCCCALDICF 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022989102.15.5e-2787.69cysteine-rich and transmembrane domain-containing protein B-like isoform X2 [Cuc... [more]
KAG6589304.15.5e-2787.69hypothetical protein SDJN03_17869, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022989101.15.5e-2787.69cysteine-rich and transmembrane domain-containing protein B-like isoform X1 [Cuc... [more]
XP_023530417.11.3e-2584.62cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita p... [more]
XP_038888289.11.4e-2277.78cysteine-rich and transmembrane domain-containing protein WIH2-like [Benincasa h... [more]
Match NameE-valueIdentityDescription
Q8S8M06.8e-0451.06Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis th... [more]
Match NameE-valueIdentityDescription
A0A6J1JEV32.6e-2787.69cysteine-rich and transmembrane domain-containing protein B-like isoform X2 OS=C... [more]
A0A6J1JJ372.6e-2787.69cysteine-rich and transmembrane domain-containing protein B-like isoform X1 OS=C... [more]
A0A6J1I2D91.5e-2285.45cysteine-rich and transmembrane domain-containing protein WIH1-like OS=Cucurbita... [more]
A0A0A0K5N82.0e-2277.78CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237300 PE=3 ... [more]
A0A5A7USJ39.7e-2276.19Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo... [more]
Match NameE-valueIdentityDescription
AT3G22240.11.6e-1351.56unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G32210.12.9e-1050.70unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G32190.11.1e-0947.89unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G56060.12.1e-0851.85unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G05340.15.1e-0747.92unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023256.1Sed0023256.1mRNA
Sed0023256.2Sed0023256.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane