Sed0023256 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGCAACTTCTCATTTCCCACAAATTTATTGACATTATAAACTCTATAAACTCACATTAGTTCACCAATTCCATTCATTTCTTTTTGCTATTCTCAATTTCCCGTACGATCTCCATTTTTGCCATCATGAGCCAATACCAAATTCCAAGTAAGTAAAAAAATGCCACATTGTCATATAGTTTTAAATTGGTACTAGAATTTACTGAACCGCATCGGTTTCGTAATGTTGGTTTGCAGCGGCGGAGGAAGTGAAAGCGTCGAACTCGGGGCCTTTTGTTGCAGCGCCGCCCCCCGTTGGGTACCCGGCGAGAGACGCTCCACAATACCCACACCAAACATTTACACCCCAAACTCAACCTAAAGGAGATGGCTTTTGGAAAGGATGGTAAGTTTTTCTCCTTTTTTATTTTAGTTTACTTTGAACAAAATATAACAAAAGTTTACATCAAGTGTATCTACTTATTTGATACAGGTCCAGTCACATTTTATTATTTTCATTTTTAAAAAAAAAATAAAGAAAAATAAAATGCGGTCTAATTGTGTCACATAAAAAGATAGAACATATCAATATATGGTGTAAACTTTTTTCACAAAGATATTTTTTATAGGAGGATTTGAATTTACAAACTCATGATGAATGATAATGAGTTCATTTTGCAAATTCTTGAAAAGAGATTTCGTCTTTTTTCCTAATTTGGTCGGAATATTTTAAAAAGATTTGGTGTTACTTATATATTGTTTGAAAGTATGTTAAGAATGTATTTTCAAATTTTTTAAAACACTTCTCAATGCTTAAAAAATATGGTTTTGACACTTTTTTTATTTCATACACATTGATCATATGGGTTTATTGATATTTTATGTGTAGTTGTTTTTTTAGTACATTTTAAACATTTTCTCACTTCAACGGTATTTAAAAATTGATGATTCAAACTTTATTATCTCTTGGCTATTGGATGCATATTTATATTGGTTTATTGTTTTGTTAACATTAAAAGTAATATTTAAGTAAAGTGTTTTCTTTGGGTTAATAATTGGAGCATAATTCTTCAATAGCACATTTTGTGTTCTAAATTCTAATAATGGTCAAACCTATATTAGTTGAGGGGCATGTCTTTTACTTAAAAACAGAATATAATTTTAAGAATCTATTGGAAAAAAAACTTTAAGACTACTTAATAAAAATGATGAAGTTTAGAACAGGTCCAATTTAGAAGTCTTTCAATTATTCAAACTTCAATGTTTATGTGAAGTTTTCCAAAATTATACCCTAGTTTCTAAAACAGAAAATCAAACAAAAGTTACAATTAATTTTTGTGTAATTAGTTATTTGTTTTACTAAATAAATTGTGTTGATTTTTGAATGTGTTGTTTGTAGCTGTGCTGCCTTATGTTGCTGCTGGGTATTGGACTGTGTCTTCTAAGGCTGATGGCTAGCTATCTCCATTCTTGCTGAGACTGATTTTATTATTATTATTTTTTTTAGTTTTCATTTATTTATTTTAAATTTCTCTATGTTTGCTATTCTTTTAATGGTGAGGCCATTGTATTTTGGGCCTTTATTCTCTTGTTTTATTGCTATGAATTAGCTTGCCATATTCATTCTTATTCCAT TGCAACTTCTCATTTCCCACAAATTTATTGACATTATAAACTCTATAAACTCACATTAGTTCACCAATTCCATTCATTTCTTTTTGCTATTCTCAATTTCCCGTACGATCTCCATTTTTGCCATCATGAGCCAATACCAAATTCCAACGGCGGAGGAAGTGAAAGCGTCGAACTCGGGGCCTTTTGTTGCAGCGCCGCCCCCCGTTGGGTACCCGGCGAGAGACGCTCCACAATACCCACACCAAACATTTACACCCCAAACTCAACCTAAAGGAGATGGCTTTTGGAAAGGATGCTGTGCTGCCTTATGTTGCTGCTGGGTATTGGACTGTGTCTTCTAAGGCTGATGGCTAGCTATCTCCATTCTTGCTGAGACTGATTTTATTATTATTATTTTTTTTAGTTTTCATTTATTTATTTTAAATTTCTCTATGTTTGCTATTCTTTTAATGGTGAGGCCATTGTATTTTGGGCCTTTATTCTCTTGTTTTATTGCTATGAATTAGCTTGCCATATTCATTCTTATTCCAT ATGAGCCAATACCAAATTCCAACGGCGGAGGAAGTGAAAGCGTCGAACTCGGGGCCTTTTGTTGCAGCGCCGCCCCCCGTTGGGTACCCGGCGAGAGACGCTCCACAATACCCACACCAAACATTTACACCCCAAACTCAACCTAAAGGAGATGGCTTTTGGAAAGGATGCTGTGCTGCCTTATGTTGCTGCTGGGTATTGGACTGTGTCTTCTAA MSQYQIPTAEEVKASNSGPFVAAPPPVGYPARDAPQYPHQTFTPQTQPKGDGFWKGCCAALCCCWVLDCVF Homology
BLAST of Sed0023256 vs. NCBI nr
Match: XP_022989102.1 (cysteine-rich and transmembrane domain-containing protein B-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27 Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0
BLAST of Sed0023256 vs. NCBI nr
Match: KAG6589304.1 (hypothetical protein SDJN03_17869, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27 Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0
BLAST of Sed0023256 vs. NCBI nr
Match: XP_022989101.1 (cysteine-rich and transmembrane domain-containing protein B-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 130.6 bits (327), Expect = 5.5e-27 Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0
BLAST of Sed0023256 vs. NCBI nr
Match: XP_023530417.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25 Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 0
BLAST of Sed0023256 vs. NCBI nr
Match: XP_038888289.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Benincasa hispida]) HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22 Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 0
BLAST of Sed0023256 vs. ExPASy Swiss-Prot
Match: Q8S8M0 (Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis thaliana OX=3702 GN=WIH2 PE=1 SV=1) HSP 1 Score: 44.3 bits (103), Expect = 6.8e-04 Identity = 24/47 (51.06%), Postives = 26/47 (55.32%), Query Frame = 0
BLAST of Sed0023256 vs. ExPASy TrEMBL
Match: A0A6J1JEV3 (cysteine-rich and transmembrane domain-containing protein B-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486275 PE=3 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27 Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0
BLAST of Sed0023256 vs. ExPASy TrEMBL
Match: A0A6J1JJ37 (cysteine-rich and transmembrane domain-containing protein B-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486275 PE=3 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27 Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 0
BLAST of Sed0023256 vs. ExPASy TrEMBL
Match: A0A6J1I2D9 (cysteine-rich and transmembrane domain-containing protein WIH1-like OS=Cucurbita maxima OX=3661 GN=LOC111468396 PE=3 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.5e-22 Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0
BLAST of Sed0023256 vs. ExPASy TrEMBL
Match: A0A0A0K5N8 (CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237300 PE=3 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22 Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 0
BLAST of Sed0023256 vs. ExPASy TrEMBL
Match: A0A5A7USJ3 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00200 PE=3 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 9.7e-22 Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0
BLAST of Sed0023256 vs. TAIR 10
Match: AT3G22240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 177 Blast hits to 177 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13 Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 0
BLAST of Sed0023256 vs. TAIR 10
Match: AT2G32210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); Has 214 Blast hits to 214 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 61.6 bits (148), Expect = 2.9e-10 Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 0
BLAST of Sed0023256 vs. TAIR 10
Match: AT2G32190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 218 Blast hits to 218 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09 Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 0
BLAST of Sed0023256 vs. TAIR 10
Match: AT1G56060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 180 Blast hits to 180 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 55.5 bits (132), Expect = 2.1e-08 Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0
BLAST of Sed0023256 vs. TAIR 10
Match: AT1G05340.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 189 Blast hits to 189 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 21; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 50.8 bits (120), Expect = 5.1e-07 Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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