Sed0023156 (gene) Chayote v1

Overview


Name	Sed0023156
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG07: 35400673 .. 35401372 (+)
RNA-Seq Expression	Sed0023156
Synteny	Sed0023156

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATTACAAAAGTAAATAGAATAAAAAAAGCCAGAGCTCTACGGTGGTCATGCTTTTCCCATGCTTCTTGACTCCCCAAGTCAATGTCTACTAATATCTCGACACGTTCATCACCCTCCACTGCTATTTAAACCACACCACAGAAAAGTGAATCAAACAGCCTGAAAAAGAACCCGGAATTATGAGCGGCGAACCGGAGAACGGAGGCTCGAAGGCGGCGAAGATCGTGGGAGCTGTGGTGGGCTTCGCCACCTTAGTCGGCTGCGTGGCGAGCATGGTGTCCGCCGTCTCCGAAACCCCAGCCGACCGGAAGATGATGAAGGCTCCGGGCAGACCCGGGCAGGTCATTGACAGGGCTGGATTTGAGAACAACCCGTCTGGGTACTTCAGTAAGCTGCACAAGAAATGAAACCAGCTAGATCTCTGGAAGACTAAGCAGTTCCCAAATAATTATGGATGTGATCATTAGTGTTTGTTTTGTGTTGTTTGTGTTTGTTTTCTGTTTTCAATGTGTTGATGAAGATTTTGATGTCTTGTTCTTATATATGGGAGTTGAAAAGGTGGTATCAAATATGGGAGCTTAATTCAAGTTTTTAATTGTCTCTTTCTATTTCTATTCTGGGTTTTTCTTCCTGTCTTGGAGAAACTAGATTTGTGTTAATTTCGTGTTTGGATAAAGTAGATTGGATTGGATTGGAT

mRNA sequence

CTCATTACAAAAGTAAATAGAATAAAAAAAGCCAGAGCTCTACGGTGGTCATGCTTTTCCCATGCTTCTTGACTCCCCAAGTCAATGTCTACTAATATCTCGACACGTTCATCACCCTCCACTGCTATTTAAACCACACCACAGAAAAGTGAATCAAACAGCCTGAAAAAGAACCCGGAATTATGAGCGGCGAACCGGAGAACGGAGGCTCGAAGGCGGCGAAGATCGTGGGAGCTGTGGTGGGCTTCGCCACCTTAGTCGGCTGCGTGGCGAGCATGGTGTCCGCCGTCTCCGAAACCCCAGCCGACCGGAAGATGATGAAGGCTCCGGGCAGACCCGGGCAGGTCATTGACAGGGCTGGATTTGAGAACAACCCGTCTGGGTACTTCAGTAAGCTGCACAAGAAATGAAACCAGCTAGATCTCTGGAAGACTAAGCAGTTCCCAAATAATTATGGATGTGATCATTAGTGTTTGTTTTGTGTTGTTTGTGTTTGTTTTCTGTTTTCAATGTGTTGATGAAGATTTTGATGTCTTGTTCTTATATATGGGAGTTGAAAAGGTGGTATCAAATATGGGAGCTTAATTCAAGTTTTTAATTGTCTCTTTCTATTTCTATTCTGGGTTTTTCTTCCTGTCTTGGAGAAACTAGATTTGTGTTAATTTCGTGTTTGGATAAAGTAGATTGGATTGGATTGGAT

Coding sequence (CDS)

ATGAGCGGCGAACCGGAGAACGGAGGCTCGAAGGCGGCGAAGATCGTGGGAGCTGTGGTGGGCTTCGCCACCTTAGTCGGCTGCGTGGCGAGCATGGTGTCCGCCGTCTCCGAAACCCCAGCCGACCGGAAGATGATGAAGGCTCCGGGCAGACCCGGGCAGGTCATTGACAGGGCTGGATTTGAGAACAACCCGTCTGGGTACTTCAGTAAGCTGCACAAGAAATGA

Protein sequence

MSGEPENGGSKAAKIVGAVVGFATLVGCVASMVSAVSETPADRKMMKAPGRPGQVIDRAGFENNPSGYFSKLHKK

Homology

[Close]

BLAST of Sed0023156 vs. NCBI nr
Match: KAG6574034.1 (hypothetical protein SDJN03_27921, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.7 bits (265), Expect = 8.9e-20
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1  MSGEPENGGSKAAKIVGAVVGFATLVGCVASMVSAVSETPADRKMMKAPGRPGQVIDRAG 60
          MSGEPE+GGSKAAKIVGAVVGFAT +GCVAS++SA +E   D KMMKAPGR GQ+I+R  
Sbjct: 1  MSGEPESGGSKAAKIVGAVVGFATFIGCVASVLSAGAEAMGDPKMMKAPGRRGQMIERGK 60

Query: 61 FENNPSGYFSKLHKK 76
          FE NPSGYF  L  K
Sbjct: 61 FEENPSGYFRDLRNK 75

[Close]

BLAST of Sed0023156 vs. NCBI nr
Match: KAA0034481.1 (hypothetical protein E6C27_scaffold65G004930 [Cucumis melo var. makuwa] >TYK09035.1 hypothetical protein E5676_scaffold475G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 8.4e-18
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MSGEPENGGSKAAKIVGAVVGFATLVGCVASMV-SAVSETPADRKMMKAPGRPGQVIDRA 60
          MSGEP+NGGSKAAKIVGAVVGFAT +GCVASM+ SA SET  DRKMMKAPG+ G+ + R 
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60

Query: 61 GFENNPSGYFSKLHKK 76
           FE +PS YF  L KK
Sbjct: 61 EFEKDPSKYFRDLRKK 76

[Close]

BLAST of Sed0023156 vs. NCBI nr
Match: KAF5444031.1 (hypothetical protein F2P56_036538 [Juglans regia])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 35/73 (47.95%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 4  EPENGGSKAAKIVGAV-VGFATLVGCVASMVSAVSETP---ADRKMMKAPGRPGQVIDRA 63
          E  +  +KAAK+ GAV  G   L G VA + +  SE P   A+ KMMKAPGR    I RA
Sbjct: 15 EDSSSYAKAAKVAGAVAAGVGVLAGAVALLSTVASEQPGPTAEEKMMKAPGREDTHISRA 74

Query: 64 GFENNPSGYFSKL 73
           F  NP GYF +L
Sbjct: 75 HFVENPKGYFQEL 87

[Close]

BLAST of Sed0023156 vs. NCBI nr
Match: PRQ56758.1 (hypothetical protein RchiOBHm_Chr1g0340821 [Rosa chinensis])

HSP 1 Score: 53.9 bits (128), Expect = 6.9e-04
Identity = 35/83 (42.17%), Postives = 44/83 (53.01%), Query Frame = 0


Query: 2  SGEPENGG---------SKAAKIVGAVVGFATLVGCVASMVSAVSETPADRKMMKAPGRP 61
          SG+ ENGG         SKAA   GA+ G AT    VA +VS  +    ++K MKAPGR 
Sbjct: 15 SGQGENGGASSSGYSWFSKAAVAAGAIAGLATAALAVAELVSGSTSLEEEKKTMKAPGRD 74

Query: 62 GQVIDRAGFENNPSGYFSKLHKK 76
           ++  R  FE +P  YFS L  K
Sbjct: 75 ERIY-REDFERDPKSYFSGLRNK 96

[Close]

BLAST of Sed0023156 vs. NCBI nr
Match: KAA8532866.1 (hypothetical protein F0562_033017 [Nyssa sinensis])

HSP 1 Score: 53.9 bits (128), Expect = 6.9e-04
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 9   GSKAAKIVGAVVGFATLVGCVASMVSAVSETPADRKMMKAPGRPGQVIDRAGFENNPSGY 68
           GS   K++GAV G A     ++S++S  SE  ++ KMMKAPGR G  I R+ FE NP  Y
Sbjct: 72  GSTLGKVIGAVAGIAVAAWSLSSLLSG-SEAESNEKMMKAPGRDG-YIPRSDFEKNPKDY 131

Query: 69  FSKL 73
           FS L
Sbjct: 132 FSNL 133

[Close]

BLAST of Sed0023156 vs. ExPASy TrEMBL
Match: A0A0A0KW91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606810 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1  MSGEPENGGSKAAKIVGAVVGFATLVGCVASMVSAVSETPADRKMMKAPGRPGQVIDRAG 60
          MSGEP+NGGSKAAKIVGAVVGFAT +GCVASM SA SET  DR+ MKAPG+ G+ + R  
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMFSADSETAGDRRTMKAPGKHGEEMYRDE 60

Query: 61 FENNPSGYFSKLHKK 76
          FE +PS YF  L KK
Sbjct: 61 FEKDPSKYFRDLRKK 75

[Close]

BLAST of Sed0023156 vs. ExPASy TrEMBL
Match: A0A5A7SYF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00210 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.0e-18
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 1  MSGEPENGGSKAAKIVGAVVGFATLVGCVASMV-SAVSETPADRKMMKAPGRPGQVIDRA 60
          MSGEP+NGGSKAAKIVGAVVGFAT +GCVASM+ SA SET  DRKMMKAPG+ G+ + R 
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60

Query: 61 GFENNPSGYFSKLHKK 76
           FE +PS YF  L KK
Sbjct: 61 EFEKDPSKYFRDLRKK 76

[Close]

BLAST of Sed0023156 vs. ExPASy TrEMBL
Match: A0A2P6SDL2 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0340821 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-04
Identity = 35/83 (42.17%), Postives = 44/83 (53.01%), Query Frame = 0


Query: 2  SGEPENGG---------SKAAKIVGAVVGFATLVGCVASMVSAVSETPADRKMMKAPGRP 61
          SG+ ENGG         SKAA   GA+ G AT    VA +VS  +    ++K MKAPGR 
Sbjct: 15 SGQGENGGASSSGYSWFSKAAVAAGAIAGLATAALAVAELVSGSTSLEEEKKTMKAPGRD 74

Query: 62 GQVIDRAGFENNPSGYFSKLHKK 76
           ++  R  FE +P  YFS L  K
Sbjct: 75 ERIY-REDFERDPKSYFSGLRNK 96

The following BLAST results are available for this feature:

BLAST of Sed0023156 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574034.1	8.9e-20	72.00	hypothetical protein SDJN03_27921, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0034481.1	8.4e-18	71.05	hypothetical protein E6C27_scaffold65G004930 [Cucumis melo var. makuwa] >TYK0903...	[more]
KAF5444031.1	1.1e-04	47.95	hypothetical protein F2P56_036538 [Juglans regia]	[more]
PRQ56758.1	6.9e-04	42.17	hypothetical protein RchiOBHm_Chr1g0340821 [Rosa chinensis]	[more]
KAA8532866.1	6.9e-04	48.44	hypothetical protein F0562_033017 [Nyssa sinensis]	[more]

BLAST of Sed0023156 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0023156 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW91	3.1e-18	69.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606810 PE=4 SV=1	[more]
A0A5A7SYF6	4.0e-18	71.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2P6SDL2	3.3e-04	42.17	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0340821 PE=4...	[more]

BLAST of Sed0023156 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..75
IPR039926	Protein egg apparatus-1	PANTHER	PTHR33333	ERYTHROCYTE MEMBRANE PROTEIN 1-LIKE	coord: 9..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023156.1	Sed0023156.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane