Sed0023106 (gene) Chayote v1

Overview


Name	Sed0023106
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG08: 4272355 .. 4273628 (+)
RNA-Seq Expression	Sed0023106
Synteny	Sed0023106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTCAGAGTCTCTCCATGCAAAAAACGGGTACTACCCGAACCGGATCCGACTTCCAAAATGGTAGCGACGGCGACGGCGACGAGGAATTTGAGGATCCGAGAAGTGAAATCTGTGATTCCGAAGAAGAGGAAGTTAGTGATGACAATGATGTACCACTCCATTTTGGACTTCCTCAAATCTCTATTCGGTCCATCGCCCGAAACCCGCAAACCCGTTACCCATGACCCATGAGTATTAATTATATGTATCTTCTTGTTCTTGCTCTCATAAAACAGAGCATTTTAAGTTTGCCTTGTTCTTCATAAATCACAAATATATGTAATGTAATCAAGTTGATCTGGCAATTATTGAGCTTCATAGTGTTTGTCATATTTAAAAATGATTTAGATCGAAAGTAATTATTATTGAAAGTAACTTCTTATTAATCATTTATTAATAGTCACTCAAAATAGCTTCTTAACATTAACTACTTATTTTTAATTATTATATTTTTAACTATTTAAAATAATTATTCATTTTAAATTTATATTCAAACAAACAATTATCATTAGTATTATTTTTTTAAAAAAAAACCACGTTTAGTCCAAACATTTCAAAGAAATGAGGAAATGAAATTAATAATAAATTGGTAGAGACCACGGTTGGTTGACCCAATTATGTAAAAATAAATAAATAAAAACTCACTTGATATTTATTTTAGGGAAGATATATTTTTAGTTTCTAGTGTAGGAAGAAATTTTAATTTAATCCATAAGTTTTAAAATTAAACCCTTTTATTCTAAAATTTCACTAATATTTATTTTTAGTCCTTATATAATTTTTCAATTTACTAAATAATTATATTCTAAAAAAATAAAATAATTATTTCATCGATATATTAAATTTTAAAATTAATCTAATAATTTTAGTCGATGTTATCTTATATAATCAATAATTTTGTTATCTCAAACACAAAAATTAAGTATTTAGATAAAAAAAAACATATTTAATTTTAAAATTTAAGAACTTAATTAAAAGTGGATCCAAAACATTAAAAGCTAAAAAGATACTTTTCCTTTGGTTTTAAATTTTAATTGATGAATCGGTGAACCAAGGAAATTAGGCTATTATTTGAAAGAGCCACGTAAGAAAGATATTCCAACAAATACAAATTTTTTTGAGGCATTACATTAGATTGGGATATTGGGCCTGTTACAGAGAGGCGTGAGAGCGGCCCAACCCAAGCCCACCAAAGGGAGGCCTCAAGCCCAACAACCGATACCATGTAG

mRNA sequence

ATGCATTTCAGAGTCTCTCCATGCAAAAAACGGGTACTACCCGAACCGGATCCGACTTCCAAAATGGTAGCGACGGCGACGGCGACGAGGAATTTGAGGATCCGAGAAGTGAAATCTGTGATTCCGAAGAAGAGGAAGTTAGTGATGACAATGATGTACCACTCCATTTTGGACTTCCTCAAATCTCTATTCGGTCCATCGCCCGAAACCCGCAAACCCAGCGGCCCAACCCAAGCCCACCAAAGGGAGGCCTCAAGCCCAACAACCGATACCATGTAG

Coding sequence (CDS)

ATGCATTTCAGAGTCTCTCCATGCAAAAAACGGGTACTACCCGAACCGGATCCGACTTCCAAAATGGTAGCGACGGCGACGGCGACGAGGAATTTGAGGATCCGAGAAGTGAAATCTGTGATTCCGAAGAAGAGGAAGTTAGTGATGACAATGATGTACCACTCCATTTTGGACTTCCTCAAATCTCTATTCGGTCCATCGCCCGAAACCCGCAAACCCAGCGGCCCAACCCAAGCCCACCAAAGGGAGGCCTCAAGCCCAACAACCGATACCATGTAG

Protein sequence

MHFRVSPCKKRVLPEPDPTSKMVATATATRNLRIREVKSVIPKKRKLVMTMMYHSILDFLKSLFGPSPETRKPSGPTQAHQREASSPTTDTM

Homology

[Close]

BLAST of Sed0023106 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 9.0e-06
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 10  KRVLP--EPDPTSKMVATATATRNLRIREVKSVIPKKRKLVMTMMYHSILDFLKSLFGPS 69
           K VLP     P + + +T +      I +VKSVIPKKRKLV TMMYH I DFLKSLF P 
Sbjct: 59  KSVLPLIPAKPDTAVTSTNSVEYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPP 118

Query: 70  PETRK 73
           P+T +
Sbjct: 119 PKTHR 123

[Close]

BLAST of Sed0023106 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 4.9e-04
Identity = 33/67 (49.25%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 12  VLPEPDPTSKMVATATATRNLR--IREVKSVIPKKRKLVMTMMYHSILDFLKSLFGPSPE 71
           VLP    T +   T+T +   R  + +VKSVIPKKRKLV TMMYH I +F+KSLF   P+
Sbjct: 92  VLPLTPATPETAVTSTNSLGYRAGVGKVKSVIPKKRKLVKTMMYHCIKNFIKSLFRRPPK 151

Query: 72  TRKPSGP 77
           T     P
Sbjct: 152 THNRPKP 158

The following BLAST results are available for this feature:

BLAST of Sed0023106 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602134.1	9.0e-06	53.85	hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6602131.1	4.9e-04	49.25	hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0023106 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0023106 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0023106 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023106.1	Sed0023106.1	mRNA