Sed0023069 (gene) Chayote v1

Overview


Name	Sed0023069
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase domain-containing protein
Location	LG09: 35383803 .. 35400892 (-)
RNA-Seq Expression	Sed0023069
Synteny	Sed0023069

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGCTCCGGTAATTCAATAATCTCACTCAAAGTATCACATTTCTTCCATGCAACCTATCAACACGACACGTGTCATTCACTCCTTCTCCGTTCTTCACCCTCCGTGGATGCTCTGTTCCAAATCCAAAACCCTCAGCTCCATCATCCATGGCGGCGAAGCGGCCATGTCCGTCGCGAAACCCTAGAATCCAAGTCCAGCCATGGACCTTCTTCTCGACGCCATCTTAGGCCTTTCCGACTCCATCTCTATCGACCTCTCATTCGAGCGCCCTCAGAATGGGCGCCTTCTTGCTCCAGGTTGCGAGACGATCCGATCGCTGCCTCGCATAACTCCGTCGTTTGGGCTCTTCCTCCTGATATCACTATCAAAGTATGTATGTTCGTGTTTTTGTTTCTTGTTTGGTTTTTGAATCATTTGACGAGATTGGATTTAATTGGTGATTTATGTGAGTTTCTGTTGAAAATTGAGCGAAATTGAAACGAGGAATGTGTTTTGAGAGCGGGATGTTAGTTTGGTGATGGATGTGGATAGAATTTTAGAGACCTAGCTGTTTGTGTTCATTGGTAATAGGATAGAGAGAACATGTGTATGGTATAGCGCAGTTTATATTTGTGTGAGTGTAATCCAGCGGGTGCCCAACGGGTCCCACGATGGTTGAAAACTTGAGTTTTGAGGTGTGGTCTCTTTAAGGTCTCAGGTTCGAGATTCACCCGTGTCTCCATTCCTGTCTCTTGGTGCTTGGCTTAGGGACAGTTATGGTTATTCCAGGTATGATGGAGCAAAACTCTGATTTCCCGGTTTCCTAAACAAAACAAAATAAATCGAGCGATACTGTTAAGGAATCAAGGGTATTTTGAGTTGAGGTTAAGTGTAGGGCCATGCTTATTTTTCATACACTTCGAGATTGGAGATCATAAGCAACCATGTTACACCTCTTCAATTCATTTTTTTTTTATATTGGTGACTGTTCGGACCTGCTTACGCACACTTCAACTATTGTTATAGATATATTGCGTGTCCTACAACATCTGGATGTAAGGAACTTATAGAAAATTAATTCCTAAGTAGGTGATCATCATGAATTGAACTCATCACCTCTTAGTATTTAAGGTCCTTTTAACTACTAGGCTACTCTATGATGGTTTACATCTCTTCGATTCATCATCTTGTTGTTTATGGTTGGTTCCATGTTGTGTTCTAACATTCACTAACGGTAGATGAAAAAACGATGGGTTATGCTGGCGTGCATGATAATGAATTGTGGCCTTTCAGGTTTTTTCCATGCTTGACACTCATAGCCTTTGCTATGCAATAGCTACTTCAATTTTTCACAAGTGTGCAATGGATCCTTCCTGCTATGCCAACATTGACTTGACAACAGTTTTACCAAGAGTTAATAATGCAGTGGTTTCTACGAAGATTCACCGAGCTGGAAACTCTCTTCAGTAAGATATTTTCTGCTAATAAATCATCATCGTATTTCCATTATGTGAAATAAATGTTGTAATGTATGCATTGAGGATATGAAACTGAAGGATGCATTCTTGATTAAGCTCATTAGTGATGTGGTCTTAAAATTTTTCTTTATTTTTTCTCAATGGAAGCTTGGTTTATTATAAAAAATGAGTGATGTGGTCTTTGAATTGTGTCTTTTGGTCAACATAAGTTACACATTTTTGTTCTTCTTCTTCACCAATCTCACCCTCCCCTTCTCTTTGATCCAGATTTCCTGCATTTCTCTGCCCCTCTCCAGTTCGTTCATTGGCGCTTCTCTCTTCCGTCCCTTCGATTTTCATTGTTATTCCTGACTGAAATGGTTAGGGGAGGATTGATCCGGCAGTTGCTGAGGAAATTTCCATCTCAATCTACATGAAGTTGAAGAGGATTTTAGTTTTTTTTAGTTACATGCTGGTGGAGAAGAATTATTGGTGGCAAATATAGTACCCAACTACTTGGAAATCCACTATGAGAACCACATCATCTCCCCCTTCTCCAACCTCTGTTGCTCCACCATGATACCATCGCTACAACATGATATCTACAAAATACCCAAGGAAATCTACCATCGAAAGAAAAGACTTCATCATCGACATTGACTTACATTACAGAGGCAGCAGAGTAAAGATCACAGAAGCAACCAAGGACAAGTCATTCTCTGTTTCCATACAGTGGTCCTCATTAACATGGATCCTCAAAAGTCTGTATTCACTCTTAGAGACCCCATTGAACCACAAGTTCTTCTTCGAAACAAGGATCGACGATTACTCCCTTTGGTTGGCAAAGACCAGAAATAAAAAGGGATACATTGCAGAACTCACCAAGGAGAACAAAAATGGCACGATATGCAAGCTGGTTATCCCTATCGGAACAGAGAGGATGGGTTGGTTCAGTTTTTACACTTTATTACAAGGTTCCCCAGCACCAGAAGGTCCCAACAAGAATATTAATGCCTCTCTTCCCACACAAAAGCCATCATTTACTCTTAACAGCGGTCCAGAGTTCACCAGACCACCAAACTTCATTTATGGACACAATAATAAAGTGTAGCCGAAGGAAGTTCCTACTACAAAACCTCAGGCGTTGTCCTATAAGTCTGCACTTATTAAGGGTAACAAAGTAGAACCGATCATCAGACCAGACGCCAACAAAGAATACAGAGCTGTTATTACAGCTAGAGAAGTCAGTAAAAACAAGATGGGAAATCAACAGAACACAAACCTCTGGAGATCGCAAAAAAGGAAAAATAACAAGAAGAAGAAAGAAGAGGAACAGAGGAATAAGCCACTTGTTTATAGGCCTAAAAATATTGCAGAACCACAAATAATCTCTACTAAGAAGCATATAGAAGAGTGGTGCGACCCATCGATATTCTGCAAAACAATCGAGTATGAATATTATTCAGATGACCCCTTCATAGCAGCTGAATTCGGTACTCCCCCGGTGACAGAAAAACAGGGTTACTCGATGAAGAAGACGACCGGTAGAGACTCTACGATGAACCTCAACGATTGCGCTCTGAAAGACGAGACATGTGGGCGGCTTAGTCTAGCAGTACTCAGTTCCTCAACAGACAACTCAGAGGTTTTTTACACAAAATCAGCCATTGAGGGGCCGGGATTTCTTCTGGTAACAGGTACACCCTCTTATCCGTCACATCTCATCCTTCCCTCCAATCCTTGGATACTTTATCCTCTGGACAACACCTTACCCCCCATCTTACGACACCTAACCTGCTATCCGAACCAATTACCCTTTTTCCAAGCCTAATCTCCCAATCCACATCAACCAAAAAGTCTCCTTTTTTGTACCTGGAACTAAAGAGAATACCAAACTCACTTCTATCTCTGAATCCGACATCTATTCTTCACCATATTCATCAACCTCTCCATCTTCCCATGTTTCACCAAAAACTCAATCCCATGAACCAACACCATTACAAATTTCCTACCCGACTCCTCTCTCATCCCTCTCTACCTTAGAAGATTCTGCTACCTATTACCAGAAGAAAGCTCTCAAGTTCGATCCAAACATTCATCCATCATTATACCCCTTGGCTAAGGAATATGGGTCTGGGAATCCTTCCCCTGCCTACCAAAGTGACAAAGCAGATGAAAGAGGCTAGGAAGAACAATAAATTATATAGAGAATTAGTTGGTCTGACATCATCGGTTAACTATGACCAACATCACAGAGACATCTCTATGGGTGGAACAAAGGTGCCTGGATGAAATTCCTTTCCTGGAATGTGAGAGGCCTTGGCTACAAAGATAAAAGGGCTATAGTGAAAAACATGATTCTTAAACATAATCCGGCAGTGGTCATTCTCCAAGAAACCAAGTCCCATTCAATTGACAACTGGTTCATCAAATCTATTTGGAGCTCACGAGATATAGCTTTGTCATCTCTGGATTCGGTGGGATCCGCGGGTGGAATCATTATCATGTGGAACAACAACTCTATTGAGATCAATGACATCAAAAGAGGTAATTATACTCTTTCTATTAACATTAAATTGGCAGATGGCTTTCTTTTTTGGATTACAGGAGTCTATGGCCCTTCTAGCACGACACACTCACCAGAATTTTGGGATGAGCTTAAAGAACTGGCTGTTTACTGTTCGTTCGGATGGATTATTTGCGGTGATTTTAATACTATCAGATGGACACACGAAAGATCAGTCCAGGGACATATTACTCATGATATGAGAAGCTTTAATGGCTTCATTGAACAACAGGTTCTTATAGACATCCCCTTTCGAATGGCTTATGCACCTGGTCTGATTTCAGAGCTTCCCCCACTTTGTCTAAGCTTGACAGGTTCCTAATCACAGAAAGTATACAAGGCCGGTTTAAAGACATTATTGTTAGCAGACTGGATAGACCTACCTTTGATCATTTCCCTCTGCAGATGGTGATCGGTAAATCAAAGTGGGGTCCTACCCCATTCAGATTCCATAATATGTGGATGGATCATAAGGACTTCAAACCAATGATGGACTATTGGTGGACAAACACTCCCATGAGAGGATGGCCTGGCCATGCTTTTATTCAAAAGCTTAAGAGCTTCAAGAGTATGATCAAACTTTGGAACAAGGAAGTCTTTGGCAATGTGACAGAAAAGAGAAACCAATTGAGCCTTGAACTTGCTATACTTGATGATATCGAGGAAAGGGATCGATTGCATCCTATCCAAATCTGCCAAAGGAATTCTATCAAAGCACAATTGCTTGACATTGCAGTCAAAGAAGAGACCTTATGGAGGCAAAATTGCAAAGTCAAATGGATGGAATTTGGGGATGAAAATTCGAAGTTGTTTCACCGATATGTGGCTGCAAGAAGACGAAAAAGTACTATTACAGATTCTCTCTAGCAATGACAGTAGTTTGGTTGATGATACAGAGATTGAAGGTGAATTCATTAGCTTCTTTAACAAGCTATACACTAAGAGAGATGAGCCGAGGACCCTCCCTCAAATTCAAGACTGGAGTCCGATTAACTTTGAGCAAGCTCACCATCTAGAATCACCATTCACCGAAACAGAAATCTGGGATGCCATCAACAAATTGGGAACCAACAAAACTCCAGGGCAAGATGGATTCACTGCTGAGTTCTATAAAAAATATTGGAACACCCTTAAGTTTGATATAATGAGGGTGTTCCAAGATTTTTTTAAGAACGGAATTATCAACGCAAGCCTCAATGAGACTTATATCTGCCTCATTCCCAAAAAAGTAGAAGCTAAATGTGTTAATGACTTTAGACCCATCAGTTTGATCCCCTGTATGTACAAGATTATTGCTAGAGTATTATCTCAAAGACTAAAAAGAGTCTTACCTCACATTATCTCTGATTCTCAAGCTGCATTTGTGGAGGGAAGGAACATTTTAGATGCCATCCTTATTGCTAACGAAGTTATTGACGAGTGGAAAAGAAAGAATAGAAAAGGAATATTCATCAAATTAGATATTGAAAAAGCTTTTGACACGGTGGATTGGGACTTTCTTGACAAAATAATGATGATAAAAGGCTTTGGCACAAAATGGAGACTTTGGATACATGGTTGTATCTCATCGGCGAATTTTTCCATCATTATTAATGGAAAACCGAGGGGAAAAATAAGGGAAACAAGAGGGCTTAGACAAGGAGATCCTCTTTCTCCTTTTCTATTTATTCTGATCATGGATTGTTTTAGTAGAATGATGTCAGAGGAAGTCGAGAAGCATAAAATTCATGGGCTTTATATTGGTACCAAGGTTCCTAGCCTTACTCATCTACAGTTTGGAGATGATACTCTCCTTTTGTCAGACTATAATGTGGATGCCATTGATGCACTCTTTCAAATAGTTGCAACTTTTGAACAAGTATCAGGGCTTAACATCAACTTTAACAAAACAGAGTTACTTGGGCTGAACATTGACGAAGCTGACCTGGATTTGCTTTCTAAACAATATGGATGTAAGCTTGGCTCATGGCCAACAACCTATTTGGGCCTTCCTCTTATTAGTAATCCTAATTCCAATGTTTTTTGGGAACCAATGCTACAGAAAGTGGAAAAGAAGATCTTATCTTGGAAGAATCAACATATATCGAAGGGTGGGAGGTTGACTCTCATCAAAGCCACTCTTGCTAATCTCCCCACATACTTTATGTCGGTGTTTAAAATGCCTAGTAGAGTTGTAGCTACCTTGGAAAGAATGATTAGAAACTTCCTCTAGAAGGGGTGTATTGATGTCAAAGGGATGCATCTCGTTAAATGGGATACTATTACCCTCCCACATTTACAAGTGGGCCTTGATATTGACAAAATCAAACCCAAGAACGAGGCCCTTCTTACAAAGTGGATTTAGAGATATTATGTGGAAGAACAAGCTCTATGGAGGAAAGTGATTGATGACAAGTATGGCACATGTCAATTTAGCAATAGGTCGAGAAGGACAACATTGGCTTCGACTAAAGGTCCATGGAAGCCCCATGATTCCGGATCGAATCTCTTATAAAGTGAAGAATGGTGAGAGCACTCTTTTTTGGAAGGATAAATGGCTTAATGATTCTCCTCTCAACCATGATTTCTCTCTTCTTTTCCACATCTCCAAAGAAAAAAATATGACTGTTAGTAAGGCATGGGAGGTTGAAAGGAAAATCTGGAACTTGAGGCTTAGAAGAAACCTGAAAGATGATGAACTAGATGAGTTTTGTTCTCTCCAGAATCAACTTGATGGAGTGACTCTGGCCGAGGGTAGGGACTGCTGCATTTGGAACCTGGAACCTAGTGGAAAGTTCACTGTCCATTCCTTACTCAAAGATCTTAAAGCCATTGCATCTGCTACAATACCTGATTTTGGCAGATTTATAGTTCTATTTGGAAAGGGAAATGCCCGAAGAAGGTGCAATTCTTCCTTTGGGAATTGAGTCATGGGGCCATCAACACCAATGATCGGCTCCAACGTAGACTTCCACGTATGACTCTCTCTCCACAATGGTGTACCATCTGTTATAAATCCACCGAAACTCAACCACATCTACTGATACCTTGTACTCATGCAAATGCATTCTGGGATATATTCGGGGGGCATTCTCTTGGTATTTGGTCATGCCTAATGATCTTCACGAGCTCCTTATATTATCCCTTTCGAACCACCCATTCAAAGAAGAAAAGAAAAAATCATTATGGGAAAACTTTATCGAAGCATATTGTTGGAATATTTGGATCGAGCGGAATCGCAGGATCTTCAAAGGAACATCTAATCACTTCGACTGGTTCATAGACAATATTACTCATATGGTGGTAACTTGGTGTAAAATGTCTCCATTATTTCATGATTATAGTTACGATATTCTTATTAATAGTTGGAGATCTTTATTATAAAGAACTATGTATTTTGTAATTTCATATTATCAATGAAATTGTTTCTTATCCCAAAAACAGTTACACATTTTGACTATTCACTACCCAAGTAGCCAACAAGAGCGTAGCTTCAGTTACATGATGCATAACCTAGTAATCAAAAGGTTACGGGTTCAAACCTCCCACCCCCAAATGTTGTTGAATCAAAAGATTATTCACTACCCTAGTATTGCTGTGAAATCCATCCGAACCACAATTCTTATTCGGTTGACTGTCTATGCGAGGTAAGGAATTTTGTCCTTCCTAAACTTGTCTCATGCACCATCTCTTTTGTAATGTTGAAATCCATCTCTTTTTTTTTTCACTTCTTAAATGAAATCTGCATCTTTCCACACAGAATTTATTTTATAATGTTAGTTTGCATTGTTTACTAACCATGTGTATTCTAGATGCCTTCTAAGGCATATGAGTTCGATTCATTGAACGTCAGATCCATCTGTAATTCCTTCAACCTTTTTGTATTGCTTTTTTTAAAACTTGATAAAAATAAACCAAGCTTTCACTTAGTAAAGAATGAAAGAACAAACGAGTATACAAAAAAAAGCCCAACAACACGAGAGAAGCAGCTTCTACGGCCTCCTATTAAGTAAAATCATCCTTAAAGAATAATTACAGAACAACATAACAACTTAGAAGCAGATGTTTAAAGAGACACATAGAATGTAGTGAGGGCCCAAAGATCTCTTGTATACCTTTCCACTCCCTGAAATGAAAATTTGATAAGATCCAAGATCTATATTGATATCAAAGAAAAAAACTACAAGATAAACCAAGTTTGAATAGGACTTGGAACCTCCCTTTCTCTAGAGCATCATCTCTTAGAGCCCTAAATGTAATCACTCAAAATATCCATACCTTCCCCTCACCCAACCTCTCCTATTTATAACCACCAGCCTCTACTTGCTCCCCAAGTAATTGCTAATATACCCTCATATTATTCCATAATACCCTAAGACCCCAAACCTATCAAAATTCTATTATTTTTTTCCGCTCATAGACTCCACAGAATTGCACATAACCAAACTTTCCACAAAATCCCTTTATCACAAAAAGGAGGAGAAGCAAGATACTCTTGGATCATCCCTCTGCATTCTCTTGATCTGGCCAAGACAAGGCCAAATACCTTAAAAACTGGTTCCATGTTGAATGTTAGTCATCCTTCATTCAATAGTCAAATGTAATCAACTTCTATGGCTAGCAAAACGTTGGTTTATGTGGTAGACTGGGGTTTGTGATAGAATCTTCTGGGGTTGGGATGGTTCGCATAGCGATCATAGGTTCAATGCTGGATTCTACATTTCTCTTTGGGCTTTTGTTTCTAGGCCTTTTTGTAACTCTGATTTTACTTGACTAGAGACCCTTTTGATAGTTCATCTCCCATTTTGTGAGGCTTTTTGTATGCTCATGCATTTTTTTTTTTTTTTTTTTTAAAAAAGCTCAATTTATGTTAAAAGAAATCTTCTTACCTTCTGATTGGAAGCACTGTGAATTGCATAATTTATATTTTATAAGCTTTGATTGACCTTGCTATTCTGTTTTCCTCCATTATTTCAGATCTCTTAAGCTTGGTATAGTTCCTGGCCCAACTGGATCTGGGATCTTGCCAACCATTGGTTTTCGGGAACTCTGTAGATATTACTAGCTTCTCATGGAATGACAAAAGATCCAGACAAGGGAAGGAGTCATCAGTTCTCACAAGATCCTGCTCAAGCTCTTTGGGAGGGGGGAGTAGCTTTACTGGGTATGAGCATACATCTGAAGTTGAGAATGTGCTCACTGTGAATTAGTTCTATTTCTGAACTGTTAAATTTTTCAGGAAGATCTTAAGAACGTCGCATCTTTACAATATTGAAAGAATGGACAATCATTCACTTCGTGTTGCTTTATCTGCTTGCCCGTCACTCCTTGATCTGGAAATCGTGGGCCTGTAAGTTTCTTTAGTTGACTGATTTTGTGGTTTTTTAATAATTTCAACTGGTGGATTATATTGTTCTAAAAATGACACTACTAGTGAACTGTGATTCAGATTCAATCTTTAGTGGAAATCCAAAACTAAGATTATTCAGTTATTTTTGTGACGTGCGTCACCTTTTCTTTTGATATCACTGATTCACAATTTCACTATGCCTGTTCTTGTCATTTTCCAATAATTAAAGGTTCCTTTATTAATCTCCTCTCGGCAATGAACTCTTTCAGTGTTTTTTTTATGTATTGGTGAGTGTCCGAGCGACTCTATTTTTTCAACAAGCAATTATAAATCATTTTTATCCTATAGGTTCTTTTAACCACCAAAGGACATTGGAGAATTAAGAAGTTATGGGTTTGACTATGATGACCACCTATTTAGTTCCAATGAGTTTCCATCAACCATATATTTTAGGGTCACAATTGTCTCGTAAGAATATTGAGTTGTGTGTAAGTTGGTTCGGATATAATATAAAAAAAGATGGTATCGTAGACTTGGTCATCCTAATGTAAGTTGGTTCGGATATAATATAAAAAAAGATGGTTAGTTCTTCTCCGGTTAAAGAAATTATTTTACTTTGGCATCGTAGACTTGGTCATCCTAATTTTTCATATTTAAAATATTTATTCCCAAACTTATTTAAAGGAATTGATTGTTCAACTTTTCATTGTGAAGCATGCATCTTTGCTAAAAACCATCGAAATACATGTGTCAAAACCTTACAAAGCCTCCAAACCTTTTTACTTAATTCATAGTGATGTTTGGGGTCCATCTAAAATTTCGACTCGTAGTGGAAAACGATGGTTTGTTACATTCATTGATGATCATACTCGTTTGACTTGAGTTTATTTGTTAACCAAAAAATCTGAGGTTCAAGATATTTTCATTCGCTTTTATAATATGATTGAAAATCAATTTCAAACAAAAATAAACATTTTACACACTGATAATGTGATTGAATATTTTAATGAAATTTTAGACACTTTTTTTAAATATAAGGGGATATCTCACCAATCTAGCTGTAGAGATACTCCCCAACAAAATGGAATTGTTGAAAGGAAAAATAGACATATAATGGAGGTTACACGTGCACTTATGATTTCTATGCATGTACCCACTTATTTATGGGGTGACGCAGTTCTTACCGCGGCTTATCTTATAAACAGAATGCCTTCTAAAATATTGTCATTTAAAACCCCTCTTAGCATCTTTAAAACCTTCTTTCCCACTGTTAGACTGTACTCAGATTTACCAATTAGAGTTTTTGGGTGTACTACTTATGTTCATCTTCCCCATTTTACTCGGTCCAAACTTGAACCTCGTGCAACAAAATGCATTTTTTTGGGCTATTCCTTGAATAAAAGGGGGTATCGGTGCTTTGATCCTTTAAACAAAAAATATTTTGAAAGTATGGTTGTCACATTTGTGGAGCATGAATCATTTTTTAAACCAAATTTGCTTCAGGGGGAGAATTCTAACCTTGAAGAAAATATTTGGGAAACTCCTCTCCAAATTATTAGTCCTAACAATGTATGTTCTAGTCTTTCTATGCCAAATGTAGAATGTTCTACTTCAGGGGGAGAGATACTATTGGTTGATCTCCCTACTCCTGTTCTTGAGCTTCATGTTTATACTAGAAGGGCACCTATTCAAAATAGTAGAGATCAGACAGTGGACTTGCCACCGCATCAATCCAATTCCCCGACAAATGATACTGAAAATTCAGGTAACCCCTCTTCTTCCAATGACATTAATATCAATATTTCTTCTAATAACCTTGATCTTGATATTCCCATAGCACAAAGAAAGGGAGTTCGTAATTGTACGAAATACCCAATTGCCAACTATCTATCATATCATAGGTTGTCTGAAAACCATAAAGCATTCACGTCTAGGATTAATGACCTTTTTATTCCAAGGAATATACAGGAAGCCTAGAATGATCTGAACTGGAACTTGACAGCTATGGAAGAGATGAATGCACTTAAACAGAATGATACTTGGGAAATGGTAGAAAGACCGAAGAATAAGAAGACTGTGGGATGTAAATGGGTATTCACCATAAAGTGTAATGCAGACGGTAGCATTGAACGATATAAAGCCAGACTCGTTGCTAAAGGCTTTACTCAGACTTATGACATTGACTACCAAGAAACATTTGCTCCTGTTGCTAAGATTAACTCGATTCGAGTTCTACTTTCTATTGCAGTAAACTCCGAGTGGCCACTTTATCAACTAGATGTGAAGAATGCATTCCTCAATGGTGATCTTGAGGAGGAAGTGTTTATGGATTTGCCACCTAGATTTGAAGTAAATCTTGGCGTTGATAAAGTCTGCAAATTAAAAAAGGCGTTATATGGTCTCAAACAGTCTCCGAGAGCGTGGTTTGAGCGCTTCGGGAAAGTAGTGAGAAGTTATGGATTTCTTCAAAGTCAAGCAGATCATACCATCTTCTACAATTATACTGGTAATAATAAGATCGTTGTTCTTATAGTATATGTAGATGACATAATTCTTACAGGCAATGACGAAGATGGGATGAACAAACTAAAGAAGAGACTAGCAAATGAATTCCAAATCAAAGACTTGGGAATGTTGAAGTACTTCTTAGGGATGGAATTTTCCAGGTCAAAGCAGGGTATCCTTGTTAATAAGAGAAAATACATTCTTGATTTATTGGAAGAGACGGGATTACTTGGGTGCAGAACAGCAGAAACTCCTATTGAGCCAAATCTAAAACTGCAAGCAGCAACTGAGGAAGAGGTGAAAGATAAAGAGCGCTATCAGAGACTTGTGGGAAGACTTATTTATCTATCTCACACTAGACCAGATATTGCATTTGCAGTAAGTATGGTAAGTCAATTTATGCATGCTCCAGGCCCCAATCATTTTGAAGCAGTCTACAGAATTTTGAGATACTTGAAAGGAACTCCAGGAAAAGGCATACTGTTTAAAAAACATGAAAATTTCAATATTGAAATTTATACCGATGCTGACTGGGCGGGTAGCACTACAGATAGAAGGTCTACTTCAGGTTATTGCTCATTTGTTGGAGGAAATCTGGTTACATGGAGAAGTAAAAAACAGAGTGTGGTATCTAGAAGTAGTGCTGAAGCAGAATTTAGAGCATTAGCTCATGGTATTTGTGAAGGTATATGGATAAAAAGGCTTCTAGAGGAACTGAAAATTACTCATGCCACACCTATGCGAGTCTATTGTGACAACAAAGCTGCTATCTCCATTGCTCATAATCCAGTTCTCCATGATAGAACAAAGCATATTGAAGTCGACAAGCATTTTATAAAAGAAAAGATTGACACTGGAGTAATTTGCATTCCATACTTACCAACTACCGAACAAATTGCTGATGTTTTGACCAAAGGACTCCCTAAGTTACGCTTTGAAAAAATGATTGACAAGCTGGCTATGAAGGACATCTTTACACCAGCTTGAGGGGGAGTGTTGATTTATTCTGATTTTATTCTATTTAATTCCTTCCTTAATTGTATGATTCTATATGTAATTGTTTCCTTATTGTAAATTATGCCTTATTTGGAGAATGAAATTTCTCCTGTAAAAGAAAGGTCATTGTAACATTTTGAAATATCGATTAATGAAATAGAACTTATTTCTATTCTTTCTAAATCGACAAACTCCATGATTGTAAAGTTAACAGACTTATTAAGGTATTCTCTGTGATTACAAGGAATTATGTGATTCATGTATACAAAATCATTTCCCTGCTGATTTTAGACTCTTATATTGTAAAAAAAAACTAAAAATTTAACAATTCCTAGCCTAATTATTCTGAATTCATTCTCTAATGTACCATGTATGACATTATTTTCTCTTTATCCCTCTCCTCCGGCGCGGCGCCTCAACGCTGCCAGAGGGAGACCATTCCGATCACCCCAATACGTCGGCATCTTCTCTTTGTTTTCTCCTTCCTCATTGCGGGGGTGATTGGTATGAGAGATGCTACCATTCAAGGTGATATTTCGTTGAAAAAAGTCTTACTATATTGCTCAAAAGGATATTTCCAGAAAGTTCAACTTCCATCCCTGATGTTTCTTCCAGCTTTTTGTTCAATATCATTCTTCATGTTTCTTGTCACAAAAGAAAAATGAAAATGCTGGTCTAGGTTTCTACAACAGTACCCTGAGATTCCGTCAACTAGTTATTATTGACTATTTTAATGGACAGGATCATTGCAATTGAGCAAGTAATGAAAGAAAGGCCTGATGTATGCTTGCTGGCTGATTTTCCATCAGAAGGAAGGTAATCACTCGCTAGGATTGTTATTATGGGTATGATAGTCATATTTAATGGCGAGTTTGTTATAGTAAAGCAGATATATGTAGAGTTAGTGGAATTGGGTGAAGGCAGAATTTTGTCAACATATGGGTTTCTTTTAGCTGGCAACTCTTTTTGTTTTTTATTTTTGTAAACTAAAAATGAACTTTTCATTTTCGATGGAAGGAAACAAAAATTGTTCAGGATGCAATCTCCATTGTGAGAGCAAGAAACTAGAACGTGAAACTAGCTAGAGAAAATTAATTCAATCTGAGCAAGACAGTTATCGTTAAAAGCATAATTATCAAACGAAGCCTAAGAGGCAGAACCCTTTATTGTTGTCCTAATTACGGTTAGGGATGGTGTGATTGGATCTGGTCAAAATTCTGGTTATATTGCAGTAAGGTTTGGTTAAATTGGAGCAAGGTATGGGCAGTGTTTTAAAAAGCCCTTTCAGGCACACGCCTAGGCGTGCCTAAGCCCAAGGCGCACCTCATGCACCTCGCCTGGGAAAGGTGAGGTGCGTTTAATAAGGCACGCGCCTTACGTGAAGCCCCAAGCACCAAAAGGTGCACGCCTTGTGGGCTTTTTCATTTTCTTTGTATTTTTTTTCATGTTTTCACCTTTATCCTTTGTGAGATCCACGTACTAGGTCCTTCGAAGGGCGAGATAACCGACTCAAGACATTTCAATACTTTAAATAACTTAATTCTTCGACTCACAAAGACAACATTCACTTAAATGAAAAGTTAATAGTTAAATTAAAGTATGCTTGGTGCGTTATTTCATTTGTCTATGGAAATGTTTTTATTGTGTATACACTCACATATATACATTATATAAATTGTATTCTTTTATATAGTGCGCCTTATGTAAAAAAACTCGCATGGTGCGCCTTGCGCATCTGGTCCCAGAGGCCCATTGCGGTGTGCCTTAGGATTTTTAAAACACTGGGTATGGGAATTGTTGCACAAGCAGTACAAAATTGTTTAGATATCCTGCATAGGTAGGGCACATATGGGCATGGGAATCAATTATGGGTTGGGACAAGTTAAAAGTAAATGTAGTTTGGAGGAATTGTACGGGGGTTAAGGTAGTACATATTTTTTGGATGTATTTGACTCTAGATATCGACTTTGGGGTGAGGTATGGATGTTGGTACCATCAAATTCTGGCTTCTACACTAATAATGTTGTACAAGACCAAGAGCTACAACAAGATGCATTTAAGGCTTAGTGATGTTAGGATTTGAAGGTCTAAGTTACATTCATAGGTTAGTTTGTTATAGTAATGAGTGAGGTATTAGGATTGGGATTATGCAGAATATGGAACCGTATTTGGTGAGAATGAAGTCAAATAAATGCGTAAGAATTCCTTGTAATTTTCCTCTTCCCATATTTATTTAAATGTTTTTCTTTACTTTCTACTCATATTCAGGCCCTATCATCTCTCCTTCAGAAGTTTATGGTTGACATCCTTAGAGCGCTTCTAACCGTGTATTTTCCTTTTCTGTTTTGCGCCGGAATCTCCTTGCAGTTACTTCGAAATTGAACAGATGCTGGATAGCGAATTAAACAGCAATGTTAGTCTGCCATCACAGCTGAGCAGTCAAACATTTAATTCAATGTTTATAAGTTGTTCAGAGAGCAGCTATAACAGCGATCAAGGTAGTGACGATGAGGATGGTCGAGATGCCAGCTATGCTATATTCGGGGAGAGTTCAGATGAGGTGGATTATCTTGCCCTGTAGTCGAAGAGCTGATAGTTGCAGTAACCAATTGAATTCGGTATAGATTCTCTCCTCCATTCACCCTAAGTTTATTTATATAGTCTGTTAATGAAAAGTAGTTAATGCGAATTGTACTTGTAATGCAATGCAAAAGGGGAGACCATTTTATTTTGAAGGAAATTCATTTGCACGGCCTAAAGAAGTTTTAAAACTTGTACAAAAAAAGAAATGTGATACATTGTGATTGCATCAAAAATATGGAACGATGCTCGAACCACTTCATTTTTTATGACTGTAAACTCTACCATTTGTCTAAGATGTCGTGTCAATGTTTGTGAATAGGCATACACGTTTAATGTCATAATTTCTTTTATATCCGTGATTGTCGGGGTCAGTTTACGCACACCTCGACTAATGTCACGGGACATACTGCCTGGCCCTGAATGTTTGGATGTCAAGGAAACTCGTAGGAAATTAATTCTGAGATAGGTGGCCACTATGGATTAAACTCATCACCTCTTAGCTCCTCAAGCTTTCTTGACCATATTTAATGTCATCATTTAGTTAATGTTAATGGTATTAATTGTTGGGACTACATGGAATAATGAAATTCATAGGACATTATCGTATCATTTTAAAGTTTAGAGATTGTTCCCAATGGGTGGCACGGTGGTCAAAGTCTTCAGCTTTGAAGGTGTGCTCTTCTCAAGGTTCCAGATTTGAGAATCACCTGTGAAATTAATTTGTAGATGCCTCCCATGTCTTCATTCTTTCGATGTCTCTTAGTGCTTGGCCTAGGGATGGTCGTGGTTAGCTCGGGTATAGTGGAGCGAAGCTCTAGTTTCCATGTTTTTTTTTACCTTTATACTTGCTAAAGTGAGCTTAGCTGTACCTTCGACTAAAATGTAATATGTACGTTTCTCTCTTCTTCTCATTCTTGTTGAACTAGAAGAATACAAAATATACGACCAACAAACTTTGGAACTTAAATTTGTATTATTGCTCTTTTTTTTTCTTGAAATGTGCTCTAAAGATACATAGCATTAATGGTAGATTTTCATGCAGGGAGGATACTTCGACGCACAAGCTGTGGTGCGCATTTTGTGCCGGCATGAGGCGATTTGGTGCTTCGGTCGATTCACCGAAGATTGGAAAACATTGAATCAGTAGCCTGGTTGACTTGATATCTCCATTTAATTGCTGAGATACAAACCAAAAGCTATATCCAGGTTACCTTCTTCCTTCCAACCCTTTCTCTAGAAGAGGAAATACGAAAATAAGAGGAAAGAGTGGAGATTTAGTAGTCCCTATCCCCTTTCCTCGTTGTTATATCGTACATGGTCGTTCACATCGTCGGTTCATAGAGAGCTCTAGTTCCTGATGATGTTAATCTGCCATGAATGTAAATTTTGTTTTGCAGCGCATTTGTACCAAAAGATCCAACTCAATAGGAGCTGGAAGTTACTCTTCTAGTTTTTTTTAGTACATATTGGGAGAGGGAGGACAAATACTGATTATCGGGATCGAACCTGTGATGCTGGTGATGAACTGGTTTATAACCAAACAATGAGACCATTGCGCTACTGACCCATTCAGTAAGTTATCTTCTAGTTGATAACATTTTGTATGCATCAGCAATTCAAATTATTATAGCATTGTTTCATGAATGCAGTTATTATTACTCTCCTTTTTT

mRNA sequence

AAAAAAGCTCCGGTAATTCAATAATCTCACTCAAAGTATCACATTTCTTCCATGCAACCTATCAACACGACACGTGTCATTCACTCCTTCTCCGTTCTTCACCCTCCGTGGATGCTCTGTTCCAAATCCAAAACCCTCAGCTCCATCATCCATGGCGGCGAAGCGGCCATGTCCGTCGCGAAACCCTAGAATCCAAGTCCAGCCATGGACCTTCTTCTCGACGCCATCTTAGGCCTTTCCGACTCCATCTCTATCGACCTCTCATTCGAGCGCCCTCAGAATGGGCGCCTTCTTGCTCCAGGTTGCGAGACGATCCGATCGCTGCCTCGCATAACTCCGTCGTTTGGGCTCTTCCTCCTGATATCACTATCAAAGTTTTTTCCATGCTTGACACTCATAGCCTTTGCTATGCAATAGCTACTTCAATTTTTCACAAGTGTGCAATGGATCCTTCCTGCTATGCCAACATTGACTTGACAACAGTTTTACCAAGAGTTAATAATGCAGTGGTTTCTACGAAGATTCACCGAGCTGGAAACTCTCTTCAATTTCCTGCATTTCTCTGCCCCTCTCCAGTTCGTTCATTGGCGCTTCTCTCTTCCGTCCCTTCGATTTTCATTGTTATTCCTGACTGAAATGGTTAGGGGAGGATTGATCCGGCAGTTGCTGAGGAAATTTCCATCTCAATCTACATGAAGTTGAAGAGGATTTTAGTTTTTTTTAGTTACATGCTGGTGGAGAAGAATTATTGGTGGCAAATATAGTACCCAACTACTTGGAAATCCACTATGAGAACCACATCATCTCCCCCTTCTCCAACCTCTGTTGCTCCACCATGATACCATCGCTACAACATGATATCTACAAAATACCCAAGGAAATCTACCATCGAAAGAAAAGACTTCATCATCGACATTGACTTACATTACAGAGGCAGCAGAGTAAAGATCACAGAAGCAACCAAGGACAAGTCATTCTCTGTTTCCATACAGTGGTCCTCATTAACATGGATCCTCAAAAGTCTGTATTCACTCTTAGAGACCCCATTGAACCACAAGTTCTTCTTCGAAACAAGGATCGACGATTACTCCCTTTGGTTGGCAAAGACCAGAAATAAAAAGGGATACATTGCAGAACTCACCAAGGAGAACAAAAATGGCACGATATGCAAGCTGGTTATCCCTATCGGAACAGAGAGGATGGGTTGGTTCAGTTTTTACACTTTATTACAAGGTTCCCCAGCACCAGAAGGTCCCAACAAGAATATTAATGCCTCTCTTCCCACACAAAAGCCATCATTTACTCTTAACAGCGGTCCAGAGTTCACCAGACCACCAAACTTCATTTATGGACACAATAATAAAGTGTAGCCGAAGGAAGTTCCTACTACAAAACCTCAGGCGTTGTCCTATAAGTCTGCACTTATTAAGGGTAACAAAGTAGAACCGATCATCAGACCAGACGCCAACAAAGAATACAGAGCTGTTATTACAGCTAGAGAAGTCAGTAAAAACAAGATGGGAAATCAACAGAACACAAACCTCTGGAGATCGCAAAAAAGGAAAAATAACAAGAAGAAGAAAGAAGAGGAACAGAGGAATAAGCCACTTGTTTATAGGCCTAAAAATATTGCAGAACCACAAATAATCTCTACTAAGAAGCATATAGAAGAGTGGTGCGACCCATCGATATTCTGCAAAACAATCGAGTATGAATATTATTCAGATGACCCCTTCATAGCAGCTGAATTCGGTACTCCCCCGGTGACAGAAAAACAGGGTTACTCGATGAAGAAGACGACCGGTAGAGACTCTACGATGAACCTCAACGATTGCGCTCTGAAAGACGAGACATGTGGGCGGCTTAGTCTAGCAGTACTCAGTTCCTCAACAGACAACTCAGAGGTTTTTTACACAAAATCAGCCATTGAGGGGCCGGGATTTCTTCTGGTAACAGGTACACCCTCTTATCCGTCACATCTCATCCTTCCCTCCAATCCTTGGATACTTTATCCTCTGGACAACACCTTACCCCCCATCTTACGACACCTAACCTGCTATCCGAACCAATTACCCTTTTTCCAAGCCTAATCTCCCAATCCACATCAACCAAAAAGTCTCCTTTTTTGTACCTGGAACTAAAGAGAATACCAAACTCACTTCTATCTCTGAATCCGACATCTATTCTTCACCATATTCATCAACCTCTCCATCTTCCCATGTTTCACCAAAAACTCAATCCCATGAACCAACACCATTACAAATTTCCTACCCGACTCCTCTCTCATCCCTCTCTACCTTAGAAGATTCTGCTACCTATTACCAGAAGAAAGCTCTCAAGTTCGATCCAAACATTCATCCATCATTATACCCCTTGGCTAAGGAATATGGGTCTGGGAATCCTTCCCCTGCCTACCAAAGTGACAAAGCAGATGAAAGAGGCTAGGAAGAACAATAAATTATATAGAGAATTAGTTGGTCTGACATCATCGGTTAACTATGACCAACATCACAGAGACATCTCTATGGGTGGAACAAAGGTGCCTGGATGAAATTCCTTTCCTGGAATGTGAGAGGCCTTGGCTACAAAGATAAAAGGGCTATAGTGAAAAACATGATTCTTAAACATAATCCGGCAGTGGTCATTCTCCAAGAAACCAAGTCCCATTCAATTGACAACTGGTTCATCAAATCTATTTGGAGCTCACGAGATATAGCTTTGTCATCTCTGGATTCGGTGGGATCCGCGGGTGGAATCATTATCATGTGGAACAACAACTCTATTGAGATCAATGACATCAAAAGAGGTAATTATACTCTTTCTATTAACATTAAATTGGCAGATGGCTTTCTTTTTTGGATTACAGGAGTCTATGGCCCTTCTAGCACGACACACTCACCAGAATTTTGGGATGAGCTTAAAGAACTGGCTGTTTACTGTTCGTTCGGATGGATTATTTGCGGTGATTTTAATACTATCAGATGGACACACGAAAGATCAGTCCAGGGACATATTACTCATGATATGAGAAGCTTTAATGGCTTCATTGAACAACAGGTTCTTATAGACATCCCCTTTCGAATGGCTTATGCACCTGGTCTGATTTCAGAGCTTCCCCCACTTTGTCTAAGCTTGACAGGTTCCTAATCACAGAAAGTATACAAGGCCGGTTTAAAGACATTATTGTTAGCAGACTGGATAGACCTACCTTTGATCATTTCCCTCTGCAGATGGTGATCGGTAAATCAAAGTGGGGTCCTACCCCATTCAGATTCCATAATATGTGGATGGATCATAAGGACTTCAAACCAATGATGGACTATTGGTGGACAAACACTCCCATGAGAGGATGGCCTGGCCATGCTTTTATTCAAAAGCTTAAGAGCTTCAAGAGTATGATCAAACTTTGGAACAAGGAAGTCTTTGGCAATGTGACAGAAAAGAGAAACCAATTGAGCCTTGAACTTGCTATACTTGATGATATCGAGGAAAGGGATCGATTGCATCCTATCCAAATCTGCCAAAGGAATTCTATCAAAGCACAATTGCTTGACATTGCAGTCAAAGAAGAGACCTTATGGAGGCAAAATTGCAAAGTCAAATGGATGGAATTTGGGGATGAAAATTCGAAGTTGTTTCACCGATATGTGGCTGCAAGAAGACGAAAAAGTACTATTACAGATTCTCTCTAGCAATGACAGTAGTTTGGTTGATGATACAGAGATTGAAGGTGAATTCATTAGCTTCTTTAACAAGCTATACACTAAGAGAGATGAGCCGAGGACCCTCCCTCAAATTCAAGACTGGAGTCCGATTAACTTTGAGCAAGCTCACCATCTAGAATCACCATTCACCGAAACAGAAATCTGGGATGCCATCAACAAATTGGGAACCAACAAAACTCCAGGGCAAGATGGATTCACTGCTGAGTTCTATAAAAAATATTGGAACACCCTTAAGTTTGATATAATGAGGGTGTTCCAAGATTTTTTTAAGAACGGAATTATCAACGCAAGCCTCAATGAGACTTATATCTGCCTCATTCCCAAAAAAGTAGAAGCTAAATGTGTTAATGACTTTAGACCCATCAGTTTGATCCCCTGTATGTACAAGATTATTGCTAGAGTATTATCTCAAAGACTAAAAAGAGTCTTACCTCACATTATCTCTGATTCTCAAGCTGCATTTGTGGAGGGAAGGAACATTTTAGATGCCATCCTTATTGCTAACGAAGTTATTGACGAGTGGAAAAGAAAGAATAGAAAAGGAATATTCATCAAATTAGATATTGAAAAAGCTTTTGACACGGTGGATTGGGACTTTCTTGACAAAATAATGATGATAAAAGGCTTTGGCACAAAATGGAGACTTTGGATACATGGTTGTATCTCATCGGCGAATTTTTCCATCATTATTAATGGAAAACCGAGGGGAAAAATAAGGGAAACAAGAGGGCTTAGACAAGGAGATCCTCTTTCTCCTTTTCTATTTATTCTGATCATGGATTGTTTTAGTAGAATGATGTCAGAGGAAGTCGAGAAGCATAAAATTCATGGGCTTTATATTGGTACCAAGGTTCCTAGCCTTACTCATCTACAGTTTGGAGATGATACTCTCCTTTTGTCAGACTATAATGTGGATGCCATTGATGCACTCTTTCAAATAGTTGCAACTTTTGAACAAGTATCAGGGCTTAACATCAACTTTAACAAAACAGAGTTACTTGGGCTGAACATTGACGAAGCTGACCTGGATTTGCTTTCTAAACAATATGGATGTAAGCTTGGCTCATGGCCAACAACCTATTTGGGCCTTCCTCTTATTAGTAATCCTAATTCCAATGTTTTTTGGGAACCAATGCTACAGAAAGTGGAAAAGAAGATCTTATCTTGGAAGAATCAACATATATCGAAGGGTGGGAGGTTGACTCTCATCAAAGCCACTCTTGCTAATCTCCCCACATACTTTATGTCGGTGTTTAAAATGCCTAGTAGAGTTGTAGCTACCTTGGAAAGAATGATTAGAAACTTCCTCTAGAAGGGGTGTATTGATGTCAAAGGGATGCATCTCGTTAAATGGGATACTATTACCCTCCCACATTTACAAGTGGGCCTTGATATTGACAAAATCAAACCCAAGAACGAGGCCCTTCTTACAAAGTGGATTTAGAGATATTATGTGGAAGAACAAGCTCTATGGAGGAAAGTGATTGATGACAAGTATGGCACATGTCAATTTAGCAATAGGTCGAGAAGGACAACATTGGCTTCGACTAAAGGTCCATGGAAGCCCCATGATTCCGGATCGAATCTCTTATAAAGTGAAGAATGGTGAGAGCACTCTTTTTTGGAAGGATAAATGGCTTAATGATTCTCCTCTCAACCATGATTTCTCTCTTCTTTTCCACATCTCCAAAGAAAAAAATATGACTGTTAGTAAGGCATGGGAGGTTGAAAGGAAAATCTGGAACTTGAGGCTTAGAAGAAACCTGAAAGATGATGAACTAGATGAGTTTTGTTCTCTCCAGAATCAACTTGATGGAGTGACTCTGGCCGAGGGTAGGGACTGCTGCATTTGGAACCTGGAACCTAGTGGAAAGTTCACTGTCCATTCCTTACTCAAAGATCTTAAAGCCATTGCATCTGCTACAATACCTGATTTTGGCAGATTTATAGTTCTATTTGGAAAGGGAAATGCCCGAAGAAGGTGCAATTCTTCCTTTGGGAATTGAGTCATGGGGCCATCAACACCAATGATCGGCTCCAACGTAGACTTCCACGTATGACTCTCTCTCCACAATGGTGTACCATCTGTTATAAATCCACCGAAACTCAACCACATCTACTGATACCTTGTACTCATGCAAATGCATTCTGGGATATATTCGGGGGGCATTCTCTTGGTATTTGGTCATGCCTAATGATCTTCACGAGCTCCTTATATTATCCCTTTCGAACCACCCATTCAAAGAAGAAAAGAAAAAATCATTATGGGAAAACTTTATCGAAGCATATTGTTGGAATATTTGGATCGAGCGGAATCGCAGGATCTTCAAAGGAACATCTAATCACTTCGACTGGTTCATAGACAATATTACTCATATGGTGGTAACTTGGTGTAAAATGTCTCCATTATTTCATGATTATAGTTACGATATTCTTATTAATAGTTGGAGATCTTTATTATAAAGAACTATGTATTTTGTAATTTCATATTATCAATGAAATTGTTTCTTATCCCAAAAACAGTTACACATTTTGACTATTCACTACCCAAGTAGCCAACAAGAGCGTAGCTTCAGTTACATGATGCATAACCTAGTAATCAAAAGGTTACGGGTTCAAACCTCCCACCCCCAAATGTTGTTGAATCAAAAGATTATTCACTACCCTAGTATTGCTGTGAAATCCATCCGAACCACAATTCTTATTCGGTTGACTGTCTATGCGAGATCTCTTAAGCTTGGTATAGTTCCTGGCCCAACTGGATCTGGGATCTTGCCAACCATTGGTTTTCGGGAACTCTGTAGATATTACTAGCTTCTCATGGAATGACAAAAGATCCAGACAAGGGAAGGAGTCATCAGTTCTCACAAGATCCTGCTCAAGCTCTTTGGGAGGGGGGAGTAGCTTTACTGGGAAGATCTTAAGAACGTCGCATCTTTACAATATTGAAAGAATGGACAATCATTCACTTCGTGTTGCTTTATCTGCTTGCCCGTCACTCCTTGATCTGGAAATCGTGGGCCTGATCATTGCAATTGAGCAAGTAATGAAAGAAAGGCCTGATGTATGCTTGCTGGCTGATTTTCCATCAGAAGGAAGTTACTTCGAAATTGAACAGATGCTGGATAGCGAATTAAACAGCAATGTTAGTCTGCCATCACAGCTGAGCAGTCAAACATTTAATTCAATGTTTATAAGTTGTTCAGAGAGCAGCTATAACAGCGATCAAGGTAGTGACGATGAGGATGGTCGAGATGCCAGCTATGCTATATTCGGGGAGAGTTCAGATGAGGTGGATTATCTTGCCCTGTAGTCGAAGAGCTGATAGTTGCAGTAACCAATTGAATTCGGGAGGATACTTCGACGCACAAGCTGTGGTGCGCATTTTGTGCCGGCATGAGGCGATTTGGTGCTTCGGTCGATTCACCGAAGATTGGAAAACATTGAATCAGTAGCCTGGTTGACTTGATATCTCCATTTAATTGCTGAGATACAAACCAAAAGCTATATCCAGGTTACCTTCTTCCTTCCAACCCTTTCTCTAGAAGAGGAAATACGAAAATAAGAGGAAAGAGTGGAGATTTAGTAGTCCCTATCCCCTTTCCTCGTTGTTATATCGTACATGGTCGTTCACATCGTCGGTTCATAGAGAGCTCTAGTTCCTGATGATGTTAATCTGCCATGAATGTAAATTTTGTTTTGCAGCGCATTTGTACCAAAAGATCCAACTCAATAGGAGCTGGAAGTTACTCTTCTAGTTTTTTTTAGTACATATTGGGAGAGGGAGGACAAATACTGATTATCGGGATCGAACCTGTGATGCTGGTGATGAACTGGTTTATAACCAAACAATGAGACCATTGCGCTACTGACCCATTCAGTAAGTTATCTTCTAGTTGATAACATTTTGTATGCATCAGCAATTCAAATTATTATAGCATTGTTTCATGAATGCAGTTATTATTACTCTCCTTTTTT

Coding sequence (CDS)

ATGATATCGAGGAAAGGGATCGATTGCATCCTATCCAAATCTGCCAAAGGAATTCTATCAAAGCACAATTGCTTGACATTGCAGTCAAAGAAGAGACCTTATGGAGGCAAAATTGCAAAGTCAAATGGATGGAATTTGGGGATGAAAATTCGAAGTTGTTTCACCGATATGTGGCTGCAAGAAGACGAAAAAGTACTATTACAGATTCTCTCTAGCAATGACAGTAGTTTGGTTGATGATACAGAGATTGAAGGTGAATTCATTAGCTTCTTTAACAAGCTATACACTAAGAGAGATGAGCCGAGGACCCTCCCTCAAATTCAAGACTGGAGTCCGATTAACTTTGAGCAAGCTCACCATCTAGAATCACCATTCACCGAAACAGAAATCTGGGATGCCATCAACAAATTGGGAACCAACAAAACTCCAGGGCAAGATGGATTCACTGCTGAGTTCTATAAAAAATATTGGAACACCCTTAAGTTTGATATAATGAGGGTGTTCCAAGATTTTTTTAAGAACGGAATTATCAACGCAAGCCTCAATGAGACTTATATCTGCCTCATTCCCAAAAAAGTAGAAGCTAAATGTGTTAATGACTTTAGACCCATCAGTTTGATCCCCTGTATGTACAAGATTATTGCTAGAGTATTATCTCAAAGACTAAAAAGAGTCTTACCTCACATTATCTCTGATTCTCAAGCTGCATTTGTGGAGGGAAGGAACATTTTAGATGCCATCCTTATTGCTAACGAAGTTATTGACGAGTGGAAAAGAAAGAATAGAAAAGGAATATTCATCAAATTAGATATTGAAAAAGCTTTTGACACGGTGGATTGGGACTTTCTTGACAAAATAATGATGATAAAAGGCTTTGGCACAAAATGGAGACTTTGGATACATGGTTGTATCTCATCGGCGAATTTTTCCATCATTATTAATGGAAAACCGAGGGGAAAAATAAGGGAAACAAGAGGGCTTAGACAAGGAGATCCTCTTTCTCCTTTTCTATTTATTCTGATCATGGATTGTTTTAGTAGAATGATGTCAGAGGAAGTCGAGAAGCATAAAATTCATGGGCTTTATATTGGTACCAAGGTTCCTAGCCTTACTCATCTACAGTTTGGAGATGATACTCTCCTTTTGTCAGACTATAATGTGGATGCCATTGATGCACTCTTTCAAATAGTTGCAACTTTTGAACAAGTATCAGGGCTTAACATCAACTTTAACAAAACAGAGTTACTTGGGCTGAACATTGACGAAGCTGACCTGGATTTGCTTTCTAAACAATATGGATGTAAGCTTGGCTCATGGCCAACAACCTATTTGGGCCTTCCTCTTATTAGTAATCCTAATTCCAATGTTTTTTGGGAACCAATGCTACAGAAAGTGGAAAAGAAGATCTTATCTTGGAAGAATCAACATATATCGAAGGGTGGGAGGTTGACTCTCATCAAAGCCACTCTTGCTAATCTCCCCACATACTTTATGTCGGTGTTTAAAATGCCTAGTAGAGTTGTAGCTACCTTGGAAAGAATGATTAGAAACTTCCTCTAG

Protein sequence

MISRKGIDCILSKSAKGILSKHNCLTLQSKKRPYGGKIAKSNGWNLGMKIRSCFTDMWLQEDEKVLLQILSSNDSSLVDDTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQAHHLESPFTETEIWDAINKLGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINASLNETYICLIPKKVEAKCVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVEGRNILDAILIANEVIDEWKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLWIHGCISSANFSIIINGKPRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIHGLYIGTKVPSLTHLQFGDDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLNIDEADLDLLSKQYGCKLGSWPTTYLGLPLISNPNSNVFWEPMLQKVEKKILSWKNQHISKGGRLTLIKATLANLPTYFMSVFKMPSRVVATLERMIRNFL

Homology

[Close]

BLAST of Sed0023069 vs. NCBI nr
Match: BBN67784.1 (VIRB2-interacting protein 2 [Prunus dulcis])

HSP 1 Score: 453.4 bits (1165), Expect = 2.7e-123
Identity = 213/460 (46.30%), Postives = 318/460 (69.13%), Query Frame = 0


Query: 60   QEDEKVLLQILSSNDSSLVDDTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQAH 119
            Q+++K   +  SS    +V + EIE E I+FF  LY+   E     +  +W+ I+ E+A 
Sbjct: 833  QKEKKFYPEAGSSGGGVVVSEGEIELEIINFFKNLYSSNVEAGWCLEGLNWNAISVEEAE 892

Query: 120  HLESPFTETEIWDAINKLGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINA 179
             L+ PF E E+  A+   G +K+PG DGF+   ++  W+ +K D+M+V  DFF  GIINA
Sbjct: 893  WLDRPFEEEEVKRAVFDCGIDKSPGPDGFSMLLFQSCWDIVKEDLMKVMADFFNCGIINA 952

Query: 180  SLNETYICLIPKKVEAKCVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVE 239
              NET+ICLIPKK E+  V+DFRPISL+  +YK++++VL+ RL+ VL   IS  Q+AFV+
Sbjct: 953  ITNETFICLIPKKKESVKVSDFRPISLVTSLYKMVSKVLASRLREVLGSTISSYQSAFVQ 1012

Query: 240  GRNILDAILIANEVIDEWKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLW 299
            GR ILDA LIANEV++E +R N+ G+  K+D+EKA+D V+W F+D++++ KGFG +WR W
Sbjct: 1013 GRQILDAALIANEVVEESRRLNKSGMVFKIDLEKAYDHVEWRFVDEVLIRKGFGDRWRSW 1072

Query: 300  IHGCISSANFSIIINGKPRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIH 359
            I GC+ +ANFS++ING+PRGK R +RGLRQGDPLSPFLF L+MD  SR+M +  +  + H
Sbjct: 1073 IRGCLETANFSVMINGRPRGKFRASRGLRQGDPLSPFLFTLVMDVLSRIMEKAQDADEFH 1132

Query: 360  GLYIGTKVPSLTHLQFGDDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLN 419
            GL  G  +  ++HLQF DDT+   +   +  + L QI+  F  VSG+ IN +K  L+G+N
Sbjct: 1133 GLSPGNGMVEISHLQFADDTIFFIEDKEEYWNNLLQILELFCFVSGMTINKSKCSLVGIN 1192

Query: 420  IDEADLDLLSKQYGCKLGSWPTTYLGLPLISNPNSNVFWEPMLQKVEKKILSWKNQHISK 479
            +D+  ++ ++  +GC +G WP  YLGLPL  NP +  FW+P+++KVE ++  WK   +SK
Sbjct: 1193 LDDGMVNEMAGAWGCDVGVWPMLYLGLPLGGNPRAIKFWDPVVEKVENRLQKWKRACLSK 1252

Query: 480  GGRLTLIKATLANLPTYFMSVFKMPSRVVATLERMIRNFL 520
            GGRLT+I+A L ++P Y+MS+F++P  V   +E+++R+FL
Sbjct: 1253 GGRLTMIQAVLCSIPIYYMSLFRIPIGVANRIEKLMRDFL 1292

[Close]

BLAST of Sed0023069 vs. NCBI nr
Match: BBN69746.1 (VIRB2-interacting protein 2 [Prunus dulcis])

HSP 1 Score: 449.5 bits (1155), Expect = 3.9e-122
Identity = 209/443 (47.18%), Postives = 310/443 (69.98%), Query Frame = 0


Query: 77  LVDDTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQAHHLESPFTETEIWDAINK 136
           +V + EIE E I+FF  LY+   E     +  +W+ I+ E+A  L+ PF E E+  A+  
Sbjct: 143 VVSEGEIELEIINFFKNLYSSNVEAGWCLEGLNWNAISVEEAEWLDRPFEEEEVKRAVFD 202

Query: 137 LGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINASLNETYICLIPKKVEAK 196
            G +K+PG DGF+   ++  W+ +K D+M+V  DFF  GIINA  NET+ICLIPKK E+ 
Sbjct: 203 CGIDKSPGPDGFSMLLFQSCWDIVKEDLMKVMADFFNCGIINAITNETFICLIPKKKESV 262

Query: 197 CVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVEGRNILDAILIANEVIDE 256
            V+DFRPISL+  +YK++++VL+ RL+ VL   IS  Q+AFV+GR ILDA LIANEV++E
Sbjct: 263 KVSDFRPISLVTSLYKMVSKVLASRLREVLGSTISSYQSAFVQGRQILDAALIANEVVEE 322

Query: 257 WKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLWIHGCISSANFSIIINGK 316
            +R N+ G+  K+D+EKA+D V+W F+D++++ KGFG +WR WI GC+ +ANFS++ING+
Sbjct: 323 SRRLNKSGMVFKIDLEKAYDHVEWRFVDEVLIRKGFGDRWRSWIRGCLETANFSVMINGR 382

Query: 317 PRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIHGLYIGTKVPSLTHLQFG 376
           PRGK R +RGLRQGDPLSPFLF L+MD  SR+M +  +  + HGL  G  +  ++HLQF 
Sbjct: 383 PRGKFRASRGLRQGDPLSPFLFTLVMDVLSRIMEKAQDADEFHGLSPGNGMVEISHLQFA 442

Query: 377 DDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLNIDEADLDLLSKQYGCKL 436
           DDT+   +   +  + L QI+  F  VSG+ IN +K  L+G+N+D+  ++ ++  +GC +
Sbjct: 443 DDTIFFIEDKEEYWNNLLQILELFCFVSGMTINKSKCSLVGINLDDGMVNEMAGAWGCDV 502

Query: 437 GSWPTTYLGLPLISNPNSNVFWEPMLQKVEKKILSWKNQHISKGGRLTLIKATLANLPTY 496
           G WP  YLGLPL  NP +  FW+P+++KVE ++  WK   +SKGGRLT+I+A L ++P Y
Sbjct: 503 GVWPMLYLGLPLGGNPRAIKFWDPVVEKVENRLQKWKRACLSKGGRLTMIQAVLCSIPIY 562

Query: 497 FMSVFKMPSRVVATLERMIRNFL 520
           +MS+F++P  V   +E+++R+FL
Sbjct: 563 YMSLFRIPIGVANRIEKLMRDFL 585

[Close]

BLAST of Sed0023069 vs. NCBI nr
Match: VVA21938.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 449.5 bits (1155), Expect = 3.9e-122
Identity = 209/443 (47.18%), Postives = 310/443 (69.98%), Query Frame = 0


Query: 77  LVDDTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQAHHLESPFTETEIWDAINK 136
           +V + EIE E I+FF  LY+   E     +  +W+ I+ E+A  L+ PF E E+  A+  
Sbjct: 323 VVSEGEIELEIINFFKNLYSSNVEAGWCLEGLNWNAISVEEAEWLDRPFEEEEVKRAVFD 382

Query: 137 LGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINASLNETYICLIPKKVEAK 196
            G +K+PG DGF+   ++  W+ +K D+M+V  DFF  GIINA  NET+ICLIPKK E+ 
Sbjct: 383 CGIDKSPGPDGFSMLLFQSCWDIVKEDLMKVMADFFNCGIINAITNETFICLIPKKKESV 442

Query: 197 CVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVEGRNILDAILIANEVIDE 256
            V+DFRPISL+  +YK++++VL+ RL+ VL   IS  Q+AFV+GR ILDA LIANEV++E
Sbjct: 443 KVSDFRPISLVTSLYKMVSKVLASRLREVLGSTISSYQSAFVQGRQILDAALIANEVVEE 502

Query: 257 WKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLWIHGCISSANFSIIINGK 316
            +R N+ G+  K+D+EKA+D V+W F+D++++ KGFG +WR WI GC+ +ANFS++ING+
Sbjct: 503 SRRLNKSGMVFKIDLEKAYDHVEWRFVDEVLIRKGFGDRWRSWIRGCLETANFSVMINGR 562

Query: 317 PRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIHGLYIGTKVPSLTHLQFG 376
           PRGK R +RGLRQGDPLSPFLF L+MD  SR+M +  +  + HGL  G  +  ++HLQF 
Sbjct: 563 PRGKFRASRGLRQGDPLSPFLFTLVMDVLSRIMEKAQDADEFHGLSPGNGMVEISHLQFA 622

Query: 377 DDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLNIDEADLDLLSKQYGCKL 436
           DDT+   +   +  + L QI+  F  VSG+ IN +K  L+G+N+D+  ++ ++  +GC +
Sbjct: 623 DDTIFFIEDKEEYWNNLLQILELFCFVSGMTINKSKCSLVGINLDDGMVNEMAGAWGCDV 682

Query: 437 GSWPTTYLGLPLISNPNSNVFWEPMLQKVEKKILSWKNQHISKGGRLTLIKATLANLPTY 496
           G WP  YLGLPL  NP +  FW+P+++KVE ++  WK   +SKGGRLT+I+A L ++P Y
Sbjct: 683 GVWPMLYLGLPLGGNPRAIKFWDPVVEKVENRLQKWKRACLSKGGRLTMIQAVLCSIPIY 742

Query: 497 FMSVFKMPSRVVATLERMIRNFL 520
           +MS+F++P  V   +E+++R+FL
Sbjct: 743 YMSLFRIPIGVANRIEKLMRDFL 765

[Close]

BLAST of Sed0023069 vs. NCBI nr
Match: VVA13439.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 449.5 bits (1155), Expect = 3.9e-122
Identity = 209/443 (47.18%), Postives = 310/443 (69.98%), Query Frame = 0


Query: 77  LVDDTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQAHHLESPFTETEIWDAINK 136
           +V + EIE E I+FF  LY+   E     +  +W+ I+ E+A  L+ PF E E+  A+  
Sbjct: 112 VVSEGEIELEIINFFKNLYSSNVEAGWCLEGLNWNAISVEEAEWLDRPFEEEEVKRAVFD 171

Query: 137 LGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINASLNETYICLIPKKVEAK 196
            G +K+PG DGF+   ++  W+ +K D+M+V  DFF  GIINA  NET+ICLIPKK E+ 
Sbjct: 172 CGIDKSPGPDGFSMLLFQSCWDIVKEDLMKVMADFFNCGIINAITNETFICLIPKKKESV 231

Query: 197 CVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVEGRNILDAILIANEVIDE 256
            V+DFRPISL+  +YK++++VL+ RL+ VL   IS  Q+AFV+GR ILDA LIANEV++E
Sbjct: 232 KVSDFRPISLVTSLYKMVSKVLASRLREVLGSTISSYQSAFVQGRQILDAALIANEVVEE 291

Query: 257 WKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLWIHGCISSANFSIIINGK 316
            +R N+ G+  K+D+EKA+D V+W F+D++++ KGFG +WR WI GC+ +ANFS++ING+
Sbjct: 292 SRRLNKSGMVFKIDLEKAYDHVEWRFVDEVLIRKGFGDRWRSWIRGCLETANFSVMINGR 351

Query: 317 PRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIHGLYIGTKVPSLTHLQFG 376
           PRGK R +RGLRQGDPLSPFLF L+MD  SR+M +  +  + HGL  G  +  ++HLQF 
Sbjct: 352 PRGKFRASRGLRQGDPLSPFLFTLVMDVLSRIMEKAQDADEFHGLSPGNGMVEISHLQFA 411

Query: 377 DDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLNIDEADLDLLSKQYGCKL 436
           DDT+   +   +  + L QI+  F  VSG+ IN +K  L+G+N+D+  ++ ++  +GC +
Sbjct: 412 DDTIFFIEDKEEYWNNLLQILELFCFVSGMTINKSKCSLVGINLDDGMVNEMAGAWGCDV 471

Query: 437 GSWPTTYLGLPLISNPNSNVFWEPMLQKVEKKILSWKNQHISKGGRLTLIKATLANLPTY 496
           G WP  YLGLPL  NP +  FW+P+++KVE ++  WK   +SKGGRLT+I+A L ++P Y
Sbjct: 472 GVWPMLYLGLPLGGNPRAIKFWDPVVEKVENRLQKWKRACLSKGGRLTMIQAVLCSIPIY 531

Query: 497 FMSVFKMPSRVVATLERMIRNFL 520
           +MS+F++P  V   +E+++R+FL
Sbjct: 532 YMSLFRIPIGVANRIEKLMRDFL 554

[Close]

BLAST of Sed0023069 vs. NCBI nr
Match: VVA41200.1 (PREDICTED: RNA-directed DNA polymerase, partial [Prunus dulcis])

HSP 1 Score: 449.5 bits (1155), Expect = 3.9e-122
Identity = 209/443 (47.18%), Postives = 310/443 (69.98%), Query Frame = 0


Query: 77  LVDDTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQAHHLESPFTETEIWDAINK 136
           +V + EIE E I+FF  LY+   E     +  +W+ I+ E+A  L+ PF E E+  A+  
Sbjct: 323 VVSEGEIELEIINFFKNLYSSNVEAGWCLEGLNWNAISVEEAEWLDRPFEEEEVKRAVFD 382

Query: 137 LGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINASLNETYICLIPKKVEAK 196
            G +K+PG DGF+   ++  W+ +K D+M+V  DFF  GIINA  NET+ICLIPKK E+ 
Sbjct: 383 CGIDKSPGPDGFSMLLFQSCWDIVKEDLMKVMADFFNCGIINAITNETFICLIPKKKESV 442

Query: 197 CVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVEGRNILDAILIANEVIDE 256
            V+DFRPISL+  +YK++++VL+ RL+ VL   IS  Q+AFV+GR ILDA LIANEV++E
Sbjct: 443 KVSDFRPISLVTSLYKMVSKVLASRLREVLGSTISSYQSAFVQGRQILDAALIANEVVEE 502

Query: 257 WKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLWIHGCISSANFSIIINGK 316
            +R N+ G+  K+D+EKA+D V+W F+D++++ KGFG +WR WI GC+ +ANFS++ING+
Sbjct: 503 SRRLNKSGMVFKIDLEKAYDHVEWRFVDEVLIRKGFGDRWRSWIRGCLETANFSVMINGR 562

Query: 317 PRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIHGLYIGTKVPSLTHLQFG 376
           PRGK R +RGLRQGDPLSPFLF L+MD  SR+M +  +  + HGL  G  +  ++HLQF 
Sbjct: 563 PRGKFRASRGLRQGDPLSPFLFTLVMDVLSRIMEKAQDADEFHGLSPGNGMVEISHLQFA 622

Query: 377 DDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLNIDEADLDLLSKQYGCKL 436
           DDT+   +   +  + L QI+  F  VSG+ IN +K  L+G+N+D+  ++ ++  +GC +
Sbjct: 623 DDTIFFIEDKEEYWNNLLQILELFCFVSGMTINKSKCSLVGINLDDGMVNEMAGAWGCDV 682

Query: 437 GSWPTTYLGLPLISNPNSNVFWEPMLQKVEKKILSWKNQHISKGGRLTLIKATLANLPTY 496
           G WP  YLGLPL  NP +  FW+P+++KVE ++  WK   +SKGGRLT+I+A L ++P Y
Sbjct: 683 GVWPMLYLGLPLGGNPRAIKFWDPVVEKVENRLQKWKRACLSKGGRLTMIQAVLCSIPIY 742

Query: 497 FMSVFKMPSRVVATLERMIRNFL 520
           +MS+F++P  V   +E+++R+FL
Sbjct: 743 YMSLFRIPIGVANRIEKLMRDFL 765

[Close]

BLAST of Sed0023069 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 8.9e-45
Identity = 135/496 (27.22%), Postives = 230/496 (46.37%), Query Frame = 0


Query: 37  KIAKSNGWNLGM--KIRSCFTDMWLQEDEKVLLQILSSNDSSL-VDDTEIEGEFISFFNK 96
           KI +S  W      KI      +  ++ EK  +  + ++   +  D TEI+     ++  
Sbjct: 358 KINESRSWFFERINKIDRPLARLIKKKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKH 417

Query: 97  LYTKR----DEPRTLPQIQDWSPINFEQAHHLESPFTETEIWDAINKLGTNKTPGQDGFT 156
           LY  +    +E  T         +N E+   L  P T +EI   IN L T K+PG DGFT
Sbjct: 418 LYANKLENLEEMDTFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFT 477

Query: 157 AEFYKKYWNTLKFDIMRVFQDFFKNGIINASLNETYICLIPKK-VEAKCVNDFRPISLIP 216
           AEFY++Y   L   ++++FQ   K GI+  S  E  I LIPK   +     +FRPISL+ 
Sbjct: 478 AEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMN 537

Query: 217 CMYKIIARVLSQRLKRVLPHIISDSQAAFVEGRNILDAILIANEVIDEWKR-KNRKGIFI 276
              KI+ ++L+ R+++ +  +I   Q  F+ G      I  +  VI    R K++  + I
Sbjct: 538 IDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVII 597

Query: 277 KLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLWIHGCISSANFSIIINGKPRGKIRETRGL 336
            +D EKAFD +   F+ K +   G    +   I         +II+NG+         G 
Sbjct: 598 SIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGT 657

Query: 337 RQGDPLSPFLFILIMDCFSRMMSEEVEKHKIHGLYIGTKVPSLTHLQFGDDTLLLSDYNV 396
           RQG PLSP LF ++++  +R + +E E   I G+ +G +   L+   F DD ++  +  +
Sbjct: 658 RQGCPLSPLLFNIVLEVLARAIRQEKE---IKGIQLGKEEVKLS--LFADDMIVYLENPI 717

Query: 397 DAIDALFQIVATFEQVSGLNINFNKTELLGLNIDEADLDLLSKQYGCKLGSWPTTYLGLP 456
            +   L ++++ F +VSG  IN  K++    N +      +  +    + S    YLG+ 
Sbjct: 718 VSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQTESQIMGELPFTIASKRIKYLGIQ 777

Query: 457 LISNPNS--NVFWEPMLQKVEKKILSWKNQHISKGGRLTLIKATLANLPTYFMSV--FKM 516
           L  +        ++P+L+++++    WKN   S  GR+ ++K  +     Y  +    K+
Sbjct: 778 LTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKL 837

Query: 517 PSRVVATLERMIRNFL 520
           P      LE+    F+
Sbjct: 838 PMTFFTELEKTTLKFI 848

[Close]

BLAST of Sed0023069 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.0e-40
Identity = 128/467 (27.41%), Postives = 225/467 (48.18%), Query Frame = 0


Query: 62  DEKVLLQILSSNDSSLVDDTEIEGEFISFFNKLYTKRD-EPRTLPQIQDWSPINFE-QAH 121
           + K +  + + + + L D   I     SF+  L++     P    ++ D  P+  E +  
Sbjct: 384 NRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFSPDPISPDACEELWDGLPVVSERRKE 443

Query: 122 HLESPFTETEIWDAINKLGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINA 181
            LE+P T  E+  A+  +  NK+PG DG T EF++ +W+TL  D  RV  + FK G +  
Sbjct: 444 RLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPL 503

Query: 182 SLNETYICLIPKKVEAKCVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVE 241
           S     + L+PKK + + + ++RP+SL+   YKI+A+ +S RLK VL  +I   Q+  V 
Sbjct: 504 SCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVP 563

Query: 242 GRNILDAILIANEVIDEWKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLW 301
           GR I D + +  +++   +R      F+ LD EKAFD VD  +L   +    FG ++  +
Sbjct: 564 GRTIFDNVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGY 623

Query: 302 IHGCISSANFSIIINGKPRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIH 361
           +    +SA   + IN      +   RG+RQG PLS  L+ L ++ F  ++     + ++ 
Sbjct: 624 LKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLL-----RKRLT 683

Query: 362 GLYIGTKVPSLTHLQFGDDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLN 421
           GL +      +    + DD +L++   VD ++   +    +   S   IN++K+   GL 
Sbjct: 684 GLVLKEPDMRVVLSAYADDVILVAQDLVD-LERAQECQEVYAAASSARINWSKSS--GLL 743

Query: 422 IDEADLDLLSKQYGCKLGSWPT---TYLGLPLISN--PNSNVFWEPMLQKVEKKILSWKN 481
                +D L   +  +  SW +    YLG+ L +   P S  F E + + V  ++  WK 
Sbjct: 744 EGSLKVDFLPPAF--RDISWESKIIKYLGVYLSAEEYPVSQNFIE-LEECVLTRLGKWKG 803

Query: 482 --QHISKGGRLTLIKATLANLPTYFMSVFKMPSRVVATLERMIRNFL 520
             + +S  GR  +I   +A+   Y +         +A ++R + +FL
Sbjct: 804 FAKVLSMRGRALVINQLVASQIWYRLICLSPTQEFIAKIQRRLLDFL 839

[Close]

BLAST of Sed0023069 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.5e-39
Identity = 124/473 (26.22%), Postives = 224/473 (47.36%), Query Frame = 0


Query: 63  EKVLLQILSSNDSSLVDDTEIEGEFISFFNKLYTKRDEPRTLPQIQDW------SPINFE 122
           + ++  I + ND    D +EI+     ++ KLY+ + E   L +I  +        ++ +
Sbjct: 386 KSLISSIRNGNDEITTDPSEIQKILNEYYKKLYSHKYE--NLKEIDQYLEACHLPRLSQK 445

Query: 123 QAHHLESPFTETEIWDAINKLGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGI 182
           +   L  P + +EI   I  L   K+PG DGFT+EFY+ +   L   ++ +FQ+  K GI
Sbjct: 446 EVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNLFQNIEKEGI 505

Query: 183 INASLNETYICLIPKK-VEAKCVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQA 242
           +  +  E  I LIPK   +     ++RPISL+    KI+ ++L+ R+++ +  II   Q 
Sbjct: 506 LPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQV 565

Query: 243 AFVEGR----NILDAILIANEVIDEWKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKG 302
            F+ G     NI  +I +   +    K KN+  + + +D EKAFD +   F+ + +   G
Sbjct: 566 GFIPGSQGWFNIRKSINVIQHIN---KLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIG 625

Query: 303 FGTKWRLWIHGCISSANFSIIINGKPRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSE 362
               +   I    S    +II+NG          G RQG PLSP LF ++M+  +  + E
Sbjct: 626 IEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAIRE 685

Query: 363 EVEKHKIHGLYIGTKVPSLTHLQFGDDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFN 422
           E     I G++IG++   L+   F DD ++  +   D+   L +++  +  VSG  IN +
Sbjct: 686 E---KAIKGIHIGSEEIKLS--LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTH 745

Query: 423 KT-ELLGLNIDEADLDLLSKQYGCKLGSWPTTYLGLPLISNPNS--NVFWEPMLQKVEKK 482
           K+   +  N ++A+   +       +      YLG+ L  +        +E + +++ + 
Sbjct: 746 KSVAFIYTNNNQAE-KTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAED 805

Query: 483 ILSWKNQHISKGGRLTLIKATLANLPTYFMSV--FKMPSRVVATLERMIRNFL 520
           +  WKN   S  GR+ ++K ++     Y  +    K P      LE++I +F+
Sbjct: 806 VNKWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFI 847

[Close]

BLAST of Sed0023069 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 160.6 bits (405), Expect = 4.7e-38
Identity = 124/471 (26.33%), Postives = 222/471 (47.13%), Query Frame = 0


Query: 62  DEKVLLQILSSNDSSLVDDTEIEGEFISFFNKLYTKR----DEPRTLPQIQDWSPINFEQ 121
           D+ ++ +I +       D  EI+    SF+ +LY+ +    DE            +N +Q
Sbjct: 393 DKILINKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQ 452

Query: 122 AHHLESPFTETEIWDAINKLGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGII 181
             HL SP +  EI   IN L T K+PG DGF+AEFY+ +   L   + ++F      G +
Sbjct: 453 VDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTL 512

Query: 182 NASLNETYICLIPK-KVEAKCVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAA 241
             S  E  I LIPK + +   + +FRPISL+    KI+ ++L+ R++  +  II   Q  
Sbjct: 513 PNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVG 572

Query: 242 FVEGR----NILDAILIANEVIDEWKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGF 301
           F+ G     NI  +I + + +    K K++  + I LD EKAFD +   F+ K++   G 
Sbjct: 573 FIPGMQGWFNIRKSINVIHYIN---KLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGI 632

Query: 302 GTKWRLWIHGCISSANFSIIINGKPRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEE 361
              +   I    S    +I +NG+    I    G RQG PLSP+LF ++++  +R + ++
Sbjct: 633 QGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNIVLEVLARAIRQQ 692

Query: 362 VEKHKIHGLYIGTKVPSLTHLQFGDDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNK 421
            E   I G+ IG +   ++ L   DD ++      ++   L  ++ +F +V G  IN NK
Sbjct: 693 KE---IKGIQIGKEEVKISLL--ADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNK 752

Query: 422 TELLGLNIDEADLDLLSKQYGCKLGSWPTTYLGLPLISNPNS--NVFWEPMLQKVEKKIL 481
           +       ++     + +     + +    YLG+ L        +  ++ + +++++ + 
Sbjct: 753 SMAFLYTKNKQAEKEIRETTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKKEIKEDLR 812

Query: 482 SWKNQHISKGGRLTLIKATLANLPTYFMSV--FKMPSRVVATLERMIRNFL 520
            WK+   S  GR+ ++K  +     Y  +    K+P++    LE  I  F+
Sbjct: 813 RWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIPTQFFNELEGAICKFV 855

[Close]

BLAST of Sed0023069 vs. ExPASy Swiss-Prot
Match: P16423 (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.6e-17
Identity = 82/364 (22.53%), Postives = 153/364 (42.03%), Query Frame = 0


Query: 58  WLQEDEKVLLQILSSNDSSLVDDTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQ 117
           W +   + +  +L+  D S++   EI    + ++ ++ T+       P     S    + 
Sbjct: 284 WDKHKGRCIKSLLNGTDESVMPSQEI---MVPYWREVMTQ-------PSPSSCSGEVIQM 343

Query: 118 AHHLE---SPFTETEIWDAINKLGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKN 177
            H LE   S  TE ++    +++  + +PG DG T +  ++  + +   ++R+       
Sbjct: 344 DHSLERVWSAITEQDL--RASRVSLSSSPGPDGITPKSAREVPSGI---MLRIMNLILWC 403

Query: 178 GIINASLNETYICLIPKKVEAKCVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQ 237
           G +  S+       IPK V AK   DFRPIS+   + + +  +L+ RL   +       Q
Sbjct: 404 GNLPHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSSINW--DPRQ 463

Query: 238 AAFVEGRNILDAILIANEVIDEWKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGT 297
             F+      D   I + V+    +  R      LD+ KAFD++    +   +   G   
Sbjct: 464 RGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPK 523

Query: 298 KWRLWIHGCISSANFSIIINGKPRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVE 357
            +  ++         S+  +G    +    RG++QGDPLSP LF L+MD   R +  E+ 
Sbjct: 524 GFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEI- 583

Query: 358 KHKIHGLYIGTKVPSLTHLQFGDDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTE 417
                G  +G  + +     F DD +L ++  +  +  L      F  + GL +N +K  
Sbjct: 584 -----GAKVGNAITNAA--AFADDLVLFAETRM-GLQVLLDKTLDFLSIVGLKLNADKCF 621

Query: 418 LLGL 419
            +G+
Sbjct: 644 TVGI 621

[Close]

BLAST of Sed0023069 vs. ExPASy TrEMBL
Match: M5XUF8 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015473mg PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 2.0e-124
Identity = 214/443 (48.31%), Postives = 314/443 (70.88%), Query Frame = 0


Query: 77   LVDDTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQAHHLESPFTETEIWDAINK 136
            +V++ EIE E I+FF  LY+   E     +  +W+ I+ E+A  LE PF E E+  A+  
Sbjct: 641  VVNEWEIELEIINFFKNLYSSNAEAGWCLEGLNWNAISVEEAEWLERPFEEEEVKRAVFD 700

Query: 137  LGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINASLNETYICLIPKKVEAK 196
             G +K+PG DGF+   ++  W  +K D+M+V  DFF  GIINA  NET+ICLIPKK E+ 
Sbjct: 701  CGIDKSPGPDGFSMLLFQSCWEYVKEDLMKVMADFFNCGIINAITNETFICLIPKKKESI 760

Query: 197  CVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVEGRNILDAILIANEVIDE 256
             V+DFRPISL+  +YK++++VL+ RL+ VL   IS  Q+AFV+GR ILDA LIANEV++E
Sbjct: 761  KVSDFRPISLVTSLYKMVSKVLASRLREVLGSTISSYQSAFVQGRQILDAALIANEVVEE 820

Query: 257  WKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLWIHGCISSANFSIIINGK 316
             +R N+ G+  K+D+EKA+D V+W F+D++++ KGFG +WR WI GC+ +ANFS++ING+
Sbjct: 821  SRRLNKSGMVFKIDLEKAYDHVEWRFVDEVLIRKGFGDRWRSWIRGCLETANFSVMINGR 880

Query: 317  PRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIHGLYIGTKVPSLTHLQFG 376
            PRGKIR +RGLRQGDPLSPFLF L+MD  SR+M +  +  + HGL  G  +  ++HLQF 
Sbjct: 881  PRGKIRASRGLRQGDPLSPFLFTLVMDVLSRIMEKAQDTDQFHGLSPGHGMVEVSHLQFA 940

Query: 377  DDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLNIDEADLDLLSKQYGCKL 436
            DDT+   +   +  + L QI+  F  VSG+ IN +K  L+G+N+D+  L+ L+  +GC++
Sbjct: 941  DDTIFFIEDKEEYWNNLLQILELFCFVSGMKINKSKCSLVGINLDDGLLNELAGAWGCEV 1000

Query: 437  GSWPTTYLGLPLISNPNSNVFWEPMLQKVEKKILSWKNQHISKGGRLTLIKATLANLPTY 496
            G+WP +YLGLPL  NP +  FW+P+++KVE ++  WK   +SKGGRLT+I+A L ++P Y
Sbjct: 1001 GAWPMSYLGLPLGGNPRAIKFWDPVVEKVENRLQKWKRACLSKGGRLTMIQAVLCSIPIY 1060

Query: 497  FMSVFKMPSRVVATLERMIRNFL 520
            +MSVF++P  V   +E+++R+FL
Sbjct: 1061 YMSVFRIPIGVANRIEKLMRDFL 1083

[Close]

BLAST of Sed0023069 vs. ExPASy TrEMBL
Match: A0A5H2XKI7 (VIRB2-interacting protein 2 OS=Prunus dulcis OX=3755 GN=Prudu_184S000200 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-123
Identity = 213/460 (46.30%), Postives = 318/460 (69.13%), Query Frame = 0


Query: 60   QEDEKVLLQILSSNDSSLVDDTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQAH 119
            Q+++K   +  SS    +V + EIE E I+FF  LY+   E     +  +W+ I+ E+A 
Sbjct: 833  QKEKKFYPEAGSSGGGVVVSEGEIELEIINFFKNLYSSNVEAGWCLEGLNWNAISVEEAE 892

Query: 120  HLESPFTETEIWDAINKLGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINA 179
             L+ PF E E+  A+   G +K+PG DGF+   ++  W+ +K D+M+V  DFF  GIINA
Sbjct: 893  WLDRPFEEEEVKRAVFDCGIDKSPGPDGFSMLLFQSCWDIVKEDLMKVMADFFNCGIINA 952

Query: 180  SLNETYICLIPKKVEAKCVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVE 239
              NET+ICLIPKK E+  V+DFRPISL+  +YK++++VL+ RL+ VL   IS  Q+AFV+
Sbjct: 953  ITNETFICLIPKKKESVKVSDFRPISLVTSLYKMVSKVLASRLREVLGSTISSYQSAFVQ 1012

Query: 240  GRNILDAILIANEVIDEWKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLW 299
            GR ILDA LIANEV++E +R N+ G+  K+D+EKA+D V+W F+D++++ KGFG +WR W
Sbjct: 1013 GRQILDAALIANEVVEESRRLNKSGMVFKIDLEKAYDHVEWRFVDEVLIRKGFGDRWRSW 1072

Query: 300  IHGCISSANFSIIINGKPRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIH 359
            I GC+ +ANFS++ING+PRGK R +RGLRQGDPLSPFLF L+MD  SR+M +  +  + H
Sbjct: 1073 IRGCLETANFSVMINGRPRGKFRASRGLRQGDPLSPFLFTLVMDVLSRIMEKAQDADEFH 1132

Query: 360  GLYIGTKVPSLTHLQFGDDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLN 419
            GL  G  +  ++HLQF DDT+   +   +  + L QI+  F  VSG+ IN +K  L+G+N
Sbjct: 1133 GLSPGNGMVEISHLQFADDTIFFIEDKEEYWNNLLQILELFCFVSGMTINKSKCSLVGIN 1192

Query: 420  IDEADLDLLSKQYGCKLGSWPTTYLGLPLISNPNSNVFWEPMLQKVEKKILSWKNQHISK 479
            +D+  ++ ++  +GC +G WP  YLGLPL  NP +  FW+P+++KVE ++  WK   +SK
Sbjct: 1193 LDDGMVNEMAGAWGCDVGVWPMLYLGLPLGGNPRAIKFWDPVVEKVENRLQKWKRACLSK 1252

Query: 480  GGRLTLIKATLANLPTYFMSVFKMPSRVVATLERMIRNFL 520
            GGRLT+I+A L ++P Y+MS+F++P  V   +E+++R+FL
Sbjct: 1253 GGRLTMIQAVLCSIPIYYMSLFRIPIGVANRIEKLMRDFL 1292

[Close]

BLAST of Sed0023069 vs. ExPASy TrEMBL
Match: M5X4S0 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021750mg PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 6.5e-123
Identity = 215/454 (47.36%), Postives = 308/454 (67.84%), Query Frame = 0


Query: 67  LQILSSNDSSLVD-DTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQAHHLESPF 126
           ++ L   D  +++ D  IE E I FF  LY+         +  +W PI+  +A  LE PF
Sbjct: 112 IEKLEVEDLGVIEVDANIEREVIRFFKGLYSSNKNVGWGVEGLNWCPISQVEADWLERPF 171

Query: 127 TETEIWDAINKLGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINASLNETY 186
              E+  A+   G +K+PG DGF+  F++  W  +K D+M+V QDFF++GI+N   NET+
Sbjct: 172 DLEEVQKAVFDCGKDKSPGPDGFSMSFFQSCWEVVKGDLMKVMQDFFQSGIVNGVTNETF 231

Query: 187 ICLIPKKVEAKCVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVEGRNILD 246
           ICLIPKK  +  V D+RPISL+  +YK+I++VL+ RL+ VL + IS SQ AFV+ R ILD
Sbjct: 232 ICLIPKKANSVKVTDYRPISLVTSLYKVISKVLASRLREVLGNTISQSQGAFVQKRQILD 291

Query: 247 AILIANEVIDEWKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLWIHGCIS 306
           A+L+ANEV++E +++ RKG+  K+D EKA+D V+W+F+D +M  KGFG KWR WI GC+ 
Sbjct: 292 AVLVANEVVEEVRKQKRKGLVFKIDFEKAYDHVEWNFVDDVMARKGFGVKWRGWIIGCLE 351

Query: 307 SANFSIIINGKPRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIHGLYIGT 366
           S NFSI+INGKPRGK R +RGLRQGDPLSPFLF L+ D  SR++    + + +HG+  G 
Sbjct: 352 SVNFSIMINGKPRGKFRASRGLRQGDPLSPFLFTLVSDVLSRLIERAQDVNLVHGIVSGH 411

Query: 367 KVPSLTHLQFGDDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLNIDEADL 426
               ++HLQF DDT+ L D   +    L Q++  F  VSG+ IN  K+ +LG+N     L
Sbjct: 412 DQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCDVSGMKINKAKSCILGINFSTEVL 471

Query: 427 DLLSKQYGCKLGSWPTTYLGLPLISNPNSNVFWEPMLQKVEKKILSWKNQHISKGGRLTL 486
           + ++  +GC++G WP  YLGLPL  NP +  FW P+++KVEK++  WK   +SKGGRLTL
Sbjct: 472 NNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMEKVEKRLQKWKRACLSKGGRLTL 531

Query: 487 IKATLANLPTYFMSVFKMPSRVVATLERMIRNFL 520
           I+A L+++P+Y+MS+FKMP  V A +E+++RNFL
Sbjct: 532 IQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFL 565

[Close]

BLAST of Sed0023069 vs. ExPASy TrEMBL
Match: M5WKV4 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015607mg PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 8.4e-123
Identity = 214/454 (47.14%), Postives = 310/454 (68.28%), Query Frame = 0


Query: 67  LQILSSNDSSLVD-DTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQAHHLESPF 126
           ++ L   D  +++ D +IE E I FF  LY+         +  +W PI+  +A  LE PF
Sbjct: 119 IEKLEVEDLGVIEVDAKIEREVIRFFKGLYSSNKNVGWGVEGLNWCPISQVEADWLERPF 178

Query: 127 TETEIWDAINKLGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINASLNETY 186
              E+  A+ + G +K+PG DGF+  F++  W  +K D+M+V QDFF++GI+N   NET+
Sbjct: 179 DLEEVQKAVFECGKDKSPGPDGFSLSFFQSCWEVVKGDLMKVMQDFFQSGIVNGVTNETF 238

Query: 187 ICLIPKKVEAKCVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVEGRNILD 246
           ICLIPKK  +  V D+RPISL+  +YK+I++VL+ RL+ VL + IS SQ AFV+ R ILD
Sbjct: 239 ICLIPKKANSVKVTDYRPISLVTSLYKVISKVLASRLREVLGNTISQSQGAFVQKRQILD 298

Query: 247 AILIANEVIDEWKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLWIHGCIS 306
           A+L+ANEV++E +++ RKG+  K+D EKA+D V+W+F+D ++  KGFG KWR WI GC+ 
Sbjct: 299 AVLVANEVVEEVRKQKRKGLVFKIDFEKAYDHVEWNFVDDVLARKGFGAKWRGWIIGCLE 358

Query: 307 SANFSIIINGKPRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIHGLYIGT 366
           S NFSI+INGKPRGK R +RGLRQGDPLSPFLF L+ D  SR++    + + +HG+  G 
Sbjct: 359 SVNFSIMINGKPRGKFRASRGLRQGDPLSPFLFTLVSDVLSRIIERAQDVNLVHGIVSGH 418

Query: 367 KVPSLTHLQFGDDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLNIDEADL 426
               ++HLQF DDT+ L D   +    L Q++  F +VSG+ IN  K+ +LG+N     L
Sbjct: 419 DQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCEVSGMKINKAKSCILGINFSTDAL 478

Query: 427 DLLSKQYGCKLGSWPTTYLGLPLISNPNSNVFWEPMLQKVEKKILSWKNQHISKGGRLTL 486
           + ++  +GC++G WP  YLGLPL  NP +  FW P++ KVEK++  WK   +SKGGRLTL
Sbjct: 479 NNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMDKVEKRLQKWKRACLSKGGRLTL 538

Query: 487 IKATLANLPTYFMSVFKMPSRVVATLERMIRNFL 520
           I+A L+++P+Y+MS+FKMP  V A +E+++RNFL
Sbjct: 539 IQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFL 572

[Close]

BLAST of Sed0023069 vs. ExPASy TrEMBL
Match: M5XHS0 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020085mg PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 1.4e-122
Identity = 214/454 (47.14%), Postives = 309/454 (68.06%), Query Frame = 0


Query: 67  LQILSSNDSSLVD-DTEIEGEFISFFNKLYTKRDEPRTLPQIQDWSPINFEQAHHLESPF 126
           ++ L   D  +++ D  IE E I FF  LY+         +  +W PI+  +A  LE PF
Sbjct: 355 IEKLEVEDLGVIEVDANIEREVIRFFKGLYSSNKNVGWGVEGLNWCPISQVEADWLERPF 414

Query: 127 TETEIWDAINKLGTNKTPGQDGFTAEFYKKYWNTLKFDIMRVFQDFFKNGIINASLNETY 186
              E+  A+ + G +K+PG DGF+  F++  W  +K D+M+V QDFF++GI+N   NET+
Sbjct: 415 DLEEVQKAVFECGKDKSPGPDGFSMSFFQSCWEVVKGDLMKVMQDFFQSGIVNGVTNETF 474

Query: 187 ICLIPKKVEAKCVNDFRPISLIPCMYKIIARVLSQRLKRVLPHIISDSQAAFVEGRNILD 246
           ICLIPKK  +  V D+RPISL+  +YK+I++VL  RL+ VL + IS SQ AFV+ R ILD
Sbjct: 475 ICLIPKKANSVKVTDYRPISLVTSLYKVISKVLVSRLREVLGNTISQSQGAFVQKRQILD 534

Query: 247 AILIANEVIDEWKRKNRKGIFIKLDIEKAFDTVDWDFLDKIMMIKGFGTKWRLWIHGCIS 306
           A+L+ANEV++E +++ RKG+  K+D EKA+D V+W+F+D +++ KGFG KWR WI GC+ 
Sbjct: 535 AVLVANEVVEEVRKQKRKGLVFKIDFEKAYDHVEWNFVDDVLVRKGFGAKWRGWIIGCLE 594

Query: 307 SANFSIIINGKPRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIHGLYIGT 366
           S NFSI+INGKPRGK R +RGLRQGDPLSPFLF L+ D  SR++    + + +HG+  G 
Sbjct: 595 SVNFSIMINGKPRGKFRASRGLRQGDPLSPFLFTLVSDVLSRIIERAQDVNLVHGIVSGH 654

Query: 367 KVPSLTHLQFGDDTLLLSDYNVDAIDALFQIVATFEQVSGLNINFNKTELLGLNIDEADL 426
               ++HLQF DDT+ L D   +    L Q++  F +VSG+ IN  K+ +LG+N     L
Sbjct: 655 DQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCEVSGMKINKAKSCILGINFSTDAL 714

Query: 427 DLLSKQYGCKLGSWPTTYLGLPLISNPNSNVFWEPMLQKVEKKILSWKNQHISKGGRLTL 486
           + ++  +GC++G WP  YLGLPL  NP +  FW P++ KVEK++  WK   +SKGGRLTL
Sbjct: 715 NNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMDKVEKRLQKWKRACLSKGGRLTL 774

Query: 487 IKATLANLPTYFMSVFKMPSRVVATLERMIRNFL 520
           I+A L+++P+Y+MS+FKMP  V A +E+++RNFL
Sbjct: 775 IQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFL 808

[Close]

BLAST of Sed0023069 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 7.1e-13
Identity = 49/167 (29.34%), Postives = 84/167 (50.30%), Query Frame = 0


Query: 54  FTDMWLQEDEKVLLQILSSNDSSLVDD-TEIEGEFISFFNKLYTKRDE---PRTLPQIQD 113
           F  + L    K L++ L  +D   V++ T+++   ++++  L     +   P ++ +I+D
Sbjct: 454 FHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKD 513

Query: 114 WSPI--NFEQAHHLESPFTETEIWDAINKLGTNKTPGQDGFTAEFYKKYWNTLKFDIMRV 173
             P   N   A  L +  ++ EI  A+  +  NK PG D FTAEF+ + W  +K   +  
Sbjct: 514 IHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAA 573

Query: 174 FQDFFKNGIINASLNETYICLIPKKVEAKCVNDFRPISLIPCMYKII 215
            ++FF+ G +    N T I LIPK      ++ FRP+S    +YKII
Sbjct: 574 VKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKII 620

[Close]

BLAST of Sed0023069 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-12
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 312 IINGKPRGKIRETRGLRQGDPLSPFLFILIMDCFSRMMSEEVEKHKIHGLYIGTKVPSLT 371
           IING P+G +  +RGLRQGDPLSP+LFIL  +  S +     E+ ++ G+ +    P + 
Sbjct: 13  IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 372 HLQFGDDT 380
           HL F DDT
Sbjct: 73  HLLFADDT 80

[Close]

BLAST of Sed0023069 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases )

HSP 1 Score: 60.5 bits (145), Expect = 4.7e-09
Identity = 27/79 (34.18%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 220 QRLKRVLPHIISDSQAAFVEGRNILDAILIANEVIDEWKRKN--RKGIFIKLDIEKAFDT 279
           +RLK ++ ++I  +QA+F+ GR   D I+   E +   +RK   +  + +KLD+EKA+D 
Sbjct: 3   ERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDR 62

Query: 280 VDWDFLDKIMMIKGFGTKW 297
           + WD+L+  ++  GF   W
Sbjct: 63  IRWDYLEDTLISAGFPEVW 81

The following BLAST results are available for this feature:

BLAST of Sed0023069 vs. NCBI nr


Match Name	E-value	Identity	Description
BBN67784.1	2.7e-123	46.30	VIRB2-interacting protein 2 [Prunus dulcis]	[more]
BBN69746.1	3.9e-122	47.18	VIRB2-interacting protein 2 [Prunus dulcis]	[more]
VVA21938.1	3.9e-122	47.18	Hypothetical predicted protein, partial [Prunus dulcis]	[more]
VVA13439.1	3.9e-122	47.18	Hypothetical predicted protein, partial [Prunus dulcis]	[more]
VVA41200.1	3.9e-122	47.18	PREDICTED: RNA-directed DNA polymerase, partial [Prunus dulcis]	[more]

BLAST of Sed0023069 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O00370	8.9e-45	27.22	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]
P14381	1.0e-40	27.41	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV...	[more]
P08548	9.5e-39	26.22	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1	[more]
P11369	4.7e-38	26.33	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE...	[more]
P16423	4.6e-17	22.53	Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS...	[more]

BLAST of Sed0023069 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5XUF8	2.0e-124	48.31	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A5H2XKI7	1.3e-123	46.30	VIRB2-interacting protein 2 OS=Prunus dulcis OX=3755 GN=Prudu_184S000200 PE=4 SV...	[more]
M5X4S0	6.5e-123	47.36	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
M5WKV4	8.4e-123	47.14	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
M5XHS0	1.4e-122	47.14	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]

BLAST of Sed0023069 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	7.1e-13	29.34	DNAse I-like superfamily protein	[more]
ATMG01250.1	1.6e-12	45.59	RNA-directed DNA polymerase (reverse transcriptase)	[more]
AT4G20520.1	4.7e-09	34.18	RNA binding;RNA-directed DNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 189..447 e-value: 1.2E-46 score: 159.1
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 170..448 score: 20.642044
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 89..519
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 89..519
None	No IPR available	CDD	cd01650	RT_nLTR_like	coord: 183..448 e-value: 2.27422E-60 score: 196.358
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 94..417

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023069.1	Sed0023069.1	mRNA
Sed0023069.2	Sed0023069.2	mRNA
Sed0023069.3	Sed0023069.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0048583	regulation of response to stimulus
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003824	catalytic activity