Sed0023029 (gene) Chayote v1

Overview
NameSed0023029
Typegene
OrganismSechium edule (Chayote v1)
Descriptionleucine-rich repeat extensin-like protein 1
LocationLG11: 33059038 .. 33061136 (+)
RNA-Seq ExpressionSed0023029
SyntenySed0023029
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTTCGACGAACAAGTTTGAAGCTTTGGGTTTTGGCAGTGGCTCTGTTTTCTTGGCCAACATCCAACGGCCAGGTGGCTGTCCCCGCCCAGCTCTGCATCAGCGATTGCTCCACGTGTCCGGTGGTTTGCACGGCGGCAACGACAACAACACCACCTCCGGCGCTCCAATCGCCGCCGCGCAACTACATTCCGCCGCCCCCGCCGCCTGAATTTTACGGTGGGTATATGACGCCGTCGTCGTATTCTTTCTGGGCTCCGCCGCCGCCTCCGGTGGGGGTTTACTTTTCCGGTGCGCGACCGTCGGGGCAAATGCCGCGGACGGCGGGGCCGGGGGATTATTCTTATCCTTATTACTATTTTTACAGTTCGAATGGCGGTTGTTCGTTGTGTTCTGTTTCTGTGTTTGTTGTGTGTTTGTTTCATTTTGTTTTTCGATGGTGATGACAACAACGTGGGCGGATTTGTTGTCGTGGTTGCTTAAGGTTAGTTTTTTGAGAATGAGATGAATAGTTTCTGATAATTAATGTACTTTTTTTTTAATTTAACAATAATTGTTTAATTTTTGTTTATATTATTAATTGTGCTGTGCTCTAGCTGGACTTCACTTTTATTTTTTTGTTGCTAAAAATTAGTTAATAATCAATGTATTGTTTTTTTTTAATTTAGGGTAGTTATTACAAAACATCACTTACCACAATTTTTTTAAAAATTTCCTCCAACCAATTTATTGTAACATCTCAAAATTAGCTACTCGTTTTTGTAATCCATCTATGTAAACTCACATTCAAATGAATTATTGACAATAATTTTTTTTTTTTTGTAAAAATTCAAATTCCAATAAGTTATTCCCTTCAATTTTTCTACAAAAAGAAAAAAAAAATTGCATTTATTATAACCTTAATTTTTAATCACTAAAAAAAAAATCATTATAATCCCTCAAAATAATTTCTCATGCAATTATTCATCCAAACACATCTTCCTGATTTCGTATTTAGTTAGTAAAATTATTATTCATGATTTTTTATGTTGTTGGTCATTTGTTGTACAAAAAAACAAATTAACCGTCAATATAATTTGGGCTATTCAACTCAAACGGTAAAGCTGATTGAGTTGGATTATAATTTCTTTGGATTGATTATAATTTTTATTTTTATTTACTTCAATTAGATTATAATTTTATAATTTGAGGATGACAAATTTGTATTTTGTTCATTATTTCTCAATTTGAACTAAAAATAATATTATATATTATTATATATGCCTAAGATTAATAAATCATCTATGTCTTGCATATTGGTAGTGACACATGTATTAACAATATATATATTTTGGGTTTAGATATAATATGAATAAAATTTCCCTACACATGCATGTGTAGGAGAGCTCTATATTTTACACTATTAGTTGCCACAAATTTTTTTTTTTATAAATGAAAATATTAAAAAGTAATTGCAATTAATTTATTGACTAAGAATATATATTACAGAGTTTTTTTTTTTTAAAACAAACAATATATATTTAATATATAAGTTCTACTTCAGGGCGCTGTCCAAGGAAAGGAAAAAATAGGTGAGTTGGAAAGGTAAAATATGCATTACAAAAAATATATTATTAATTAAATTTAAAAAAAAAACACAGATTTATAAATACTTTAAACTATGGCTAAATATGTAATTATTTTTGTAAAAGTAGCTATTTACTACAATTTCCATAAAATAAAATAGGGAATTGGAATCGTGGATTATAAGGAAGGAATAACTGCCCCTTTTGTACTAAACATTTGACCATTCATGTTCAACTTAATATTTATGAAACTAGAAAATACTGATGTGCGTTGCACGTGTAAATACATGTATTAATAATTTTTGTTGGTAAAAATAATACTAAATAATAATATTAGTGTAAAAAAAAGAACTACTAATAAAAAGTAAAATAAGATGTTGGTTTTTTTGTTTATACTTTTTTATATATATTTGAATTAATATTGAATATATGAGTTAACATTTAATAAATTTTTAATATCAAAAGAGTTGGTGGGACGTTGGTTTATTTTTTTGGAGATAATCCAATTCAACACCATGATCATAGGTTAA

mRNA sequence

ATGCCGTTTCGACGAACAAGTTTGAAGCTTTGGGTTTTGGCAGTGGCTCTGTTTTCTTGGCCAACATCCAACGGCCAGGTGGCTGTCCCCGCCCAGCTCTGCATCAGCGATTGCTCCACGTGTCCGGTGGTTTGCACGGCGGCAACGACAACAACACCACCTCCGGCGCTCCAATCGCCGCCGCGCAACTACATTCCGCCGCCCCCGCCGCCTGAATTTTACGGTGGGTATATGACGCCGTCGTCGTATTCTTTCTGGGCTCCGCCGCCGCCTCCGGTGGGGGTTTACTTTTCCGGTGCGCGACCGTCGGGGCAAATGCCGCGGACGGCGGGGCCGGGGGATTATTCTTATCCTTATTACTATTTTTACAGTTCGAATGGCGAGTTGGTGGGACGTTGGTTTATTTTTTTGGAGATAATCCAATTCAACACCATGATCATAGGTTAA

Coding sequence (CDS)

ATGCCGTTTCGACGAACAAGTTTGAAGCTTTGGGTTTTGGCAGTGGCTCTGTTTTCTTGGCCAACATCCAACGGCCAGGTGGCTGTCCCCGCCCAGCTCTGCATCAGCGATTGCTCCACGTGTCCGGTGGTTTGCACGGCGGCAACGACAACAACACCACCTCCGGCGCTCCAATCGCCGCCGCGCAACTACATTCCGCCGCCCCCGCCGCCTGAATTTTACGGTGGGTATATGACGCCGTCGTCGTATTCTTTCTGGGCTCCGCCGCCGCCTCCGGTGGGGGTTTACTTTTCCGGTGCGCGACCGTCGGGGCAAATGCCGCGGACGGCGGGGCCGGGGGATTATTCTTATCCTTATTACTATTTTTACAGTTCGAATGGCGAGTTGGTGGGACGTTGGTTTATTTTTTTGGAGATAATCCAATTCAACACCATGATCATAGGTTAA

Protein sequence

MPFRRTSLKLWVLAVALFSWPTSNGQVAVPAQLCISDCSTCPVVCTAATTTTPPPALQSPPRNYIPPPPPPEFYGGYMTPSSYSFWAPPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYYFYSSNGELVGRWFIFLEIIQFNTMIIG
Homology
BLAST of Sed0023029 vs. NCBI nr
Match: KAE8649911.1 (hypothetical protein Csa_012510 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 6.7e-27
Identity = 82/137 (59.85%), Postives = 92/137 (67.15%), Query Frame = 0

Query: 1   MPFRRT-----SLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTP 60
           MPF  T     S  LW++A  LFS  +S  Q+AVP+  QLCISDCSTCPV+CTA      
Sbjct: 1   MPFPGTRRILGSFGLWIVAFTLFS-ASSKAQMAVPSTGQLCISDCSTCPVICTA------ 60

Query: 61  PPALQSPPRNYIPPPPPPEFYGGY-MTP---SSYSFWAPPPPPVGVYFSGARPSGQMPRT 120
           PP    PP +YI PPPPP FYGG+ M P    SY  W  PPPPV  YF GARPSG+MP+T
Sbjct: 61  PP----PPLSYI-PPPPPNFYGGFNMAPPATPSYYLWG-PPPPVANYFLGARPSGEMPQT 120

Query: 121 AGPGDYSYPYYYFYSSN 127
            GP DYSYPYYYFYSSN
Sbjct: 121 VGPRDYSYPYYYFYSSN 124

BLAST of Sed0023029 vs. NCBI nr
Match: XP_022981722.1 (leucine-rich repeat extensin-like protein 1 [Cucurbita maxima])

HSP 1 Score: 131.0 bits (328), Expect = 8.7e-27
Identity = 84/140 (60.00%), Postives = 93/140 (66.43%), Query Frame = 0

Query: 1   MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTP 60
           MPF+      TSL L V+A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T T  
Sbjct: 1   MPFQGKMRFSTSLGLCVMAAALF-LPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPTPT 60

Query: 61  PPALQSPPRNYI--PPPPPPEFYGGYMTP-----SSYSFWAPPPPPVGVYFSGARPSGQM 120
           P +  S    YI  PPPPPP FYGGYM P     SSY F+  PPPPV  Y SGA+PSGQM
Sbjct: 61  PRSYSS----YIPSPPPPPPAFYGGYMGPPPALTSSY-FFRGPPPPVANYVSGAQPSGQM 120

Query: 121 PRTAGPGDYSYPYYYFYSSN 127
           P+T GP DYSYPYYYFYSSN
Sbjct: 121 PQTVGPRDYSYPYYYFYSSN 134

BLAST of Sed0023029 vs. NCBI nr
Match: KAG6608366.1 (Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-26
Identity = 82/135 (60.74%), Postives = 89/135 (65.93%), Query Frame = 0

Query: 1   MPFRRTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQ 60
           MPF  TSL LWV+A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T         
Sbjct: 7   MPF-STSLGLWVMAAALF-LPPSDAQLPVPSTGQLCISQCVTCPVVCTTPT--------- 66

Query: 61  SPPRNY--IPPPPPPEFYGGYMTP-----SSYSFWAPPPPPVGVYFSGARPSGQMPRTAG 120
             PR+Y    PPPPP FYGGYM P     SSY F   PPPPV  Y SGA+PSGQMP+T G
Sbjct: 67  --PRSYNTYIPPPPPAFYGGYMGPPPALTSSY-FLRGPPPPVANYVSGAQPSGQMPQTVG 126

Query: 121 PGDYSYPYYYFYSSN 127
           P DYSYPYYYFYSSN
Sbjct: 127 PRDYSYPYYYFYSSN 127

BLAST of Sed0023029 vs. NCBI nr
Match: XP_022940707.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 125.9 bits (315), Expect = 2.8e-25
Identity = 81/140 (57.86%), Postives = 89/140 (63.57%), Query Frame = 0

Query: 1   MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTP 60
           MPF+      TSL LWV+A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T    
Sbjct: 1   MPFQGKMRFSTSLGLWVMAAALF-LPPSDAQLPVPSTGQLCISQCVTCPVVCTTPT---- 60

Query: 61  PPALQSPPRNY--IPPPPPPEFYGGYMTP-----SSYSFWAPPPPPVGVYFSGARPSGQM 120
                  PR+Y    PPPPP FYGGYM P     SSY F   P PPV  Y SGA+PSGQM
Sbjct: 61  -------PRSYNTYIPPPPPAFYGGYMGPPPALTSSY-FLRGPSPPVANYVSGAQPSGQM 120

Query: 121 PRTAGPGDYSYPYYYFYSSN 127
           P+T GP DYSYPYYYFYSSN
Sbjct: 121 PQTVGPRDYSYPYYYFYSSN 127

BLAST of Sed0023029 vs. NCBI nr
Match: XP_023523402.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-23
Identity = 74/125 (59.20%), Postives = 81/125 (64.80%), Query Frame = 0

Query: 13  LAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTPPPALQSPPRNY----IP 72
           +A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T           PR+Y     P
Sbjct: 1   MAAALF-LPPSDAQLPVPSTGQLCISQCVTCPVVCTTPT-----------PRSYNTYIPP 60

Query: 73  PPPPPEFYGGYMTP-----SSYSFWAPPPPPVGVYFSGARPSGQMPRTAGPGDYSYPYYY 127
           PPPPP FYGGYM P     SSY F   PPPPV  Y SGA+PSGQMP+T GP DYSYPYYY
Sbjct: 61  PPPPPAFYGGYMGPPPALTSSY-FLRGPPPPVANYVSGAQPSGQMPQTVGPRDYSYPYYY 112

BLAST of Sed0023029 vs. ExPASy TrEMBL
Match: A0A0A0L054 (Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 82/137 (59.85%), Postives = 92/137 (67.15%), Query Frame = 0

Query: 1   MPFRRT-----SLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTP 60
           MPF  T     S  LW++A  LFS  +S  Q+AVP+  QLCISDCSTCPV+CTA      
Sbjct: 39  MPFPGTRRILGSFGLWIVAFTLFS-ASSKAQMAVPSTGQLCISDCSTCPVICTA------ 98

Query: 61  PPALQSPPRNYIPPPPPPEFYGGY-MTP---SSYSFWAPPPPPVGVYFSGARPSGQMPRT 120
           PP    PP +YI PPPPP FYGG+ M P    SY  W  PPPPV  YF GARPSG+MP+T
Sbjct: 99  PP----PPLSYI-PPPPPNFYGGFNMAPPATPSYYLWG-PPPPVANYFLGARPSGEMPQT 158

Query: 121 AGPGDYSYPYYYFYSSN 127
            GP DYSYPYYYFYSSN
Sbjct: 159 VGPRDYSYPYYYFYSSN 162

BLAST of Sed0023029 vs. ExPASy TrEMBL
Match: A0A6J1IUS7 (leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111480787 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.2e-27
Identity = 84/140 (60.00%), Postives = 93/140 (66.43%), Query Frame = 0

Query: 1   MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTP 60
           MPF+      TSL L V+A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T T  
Sbjct: 1   MPFQGKMRFSTSLGLCVMAAALF-LPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPTPT 60

Query: 61  PPALQSPPRNYI--PPPPPPEFYGGYMTP-----SSYSFWAPPPPPVGVYFSGARPSGQM 120
           P +  S    YI  PPPPPP FYGGYM P     SSY F+  PPPPV  Y SGA+PSGQM
Sbjct: 61  PRSYSS----YIPSPPPPPPAFYGGYMGPPPALTSSY-FFRGPPPPVANYVSGAQPSGQM 120

Query: 121 PRTAGPGDYSYPYYYFYSSN 127
           P+T GP DYSYPYYYFYSSN
Sbjct: 121 PQTVGPRDYSYPYYYFYSSN 134

BLAST of Sed0023029 vs. ExPASy TrEMBL
Match: A0A6J1FKD3 (leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111446222 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 81/140 (57.86%), Postives = 89/140 (63.57%), Query Frame = 0

Query: 1   MPFR-----RTSLKLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCTAATTTTP 60
           MPF+      TSL LWV+A ALF  P S+ Q+ VP+  QLCIS C TCPVVCT  T    
Sbjct: 1   MPFQGKMRFSTSLGLWVMAAALF-LPPSDAQLPVPSTGQLCISQCVTCPVVCTTPT---- 60

Query: 61  PPALQSPPRNY--IPPPPPPEFYGGYMTP-----SSYSFWAPPPPPVGVYFSGARPSGQM 120
                  PR+Y    PPPPP FYGGYM P     SSY F   P PPV  Y SGA+PSGQM
Sbjct: 61  -------PRSYNTYIPPPPPAFYGGYMGPPPALTSSY-FLRGPSPPVANYVSGAQPSGQM 120

Query: 121 PRTAGPGDYSYPYYYFYSSN 127
           P+T GP DYSYPYYYFYSSN
Sbjct: 121 PQTVGPRDYSYPYYYFYSSN 127

BLAST of Sed0023029 vs. ExPASy TrEMBL
Match: A0A2N9HA71 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.5e-16
Identity = 58/138 (42.03%), Postives = 78/138 (56.52%), Query Frame = 0

Query: 9   KLWVLAVALFSWPTSNGQVAVPA--QLCISDCSTCPVVCT-------AATTTTPPPALQS 68
           ++W++ + +    TS  Q+  P+   LCISDC+TCPV+C+       + +  +PP    S
Sbjct: 19  RIWIMGLLMLVNVTSEDQIGSPSSGSLCISDCATCPVICSPPPPLQESYSPPSPPVQHHS 78

Query: 69  PPRNYIPPPPPPEFYGGYMTP--------SSYSFWAPPPPPVGVYFSGARPSG----QMP 126
           PP++Y   PPPP      +TP        SSYS W  PPPP  +YF+   PSG    +MP
Sbjct: 79  PPKSYYANPPPPPSPPSSLTPPPASPPKASSYSSWGTPPPPF-MYFNNMPPSGNINNRMP 138

BLAST of Sed0023029 vs. ExPASy TrEMBL
Match: A0A6A1VUN3 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR4G020414 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 60/146 (41.10%), Postives = 75/146 (51.37%), Query Frame = 0

Query: 8   LKLWVLAVALFSW-PTSNGQVAVPA--QLCISDCSTCPVVCT------AATTTTPPPALQ 67
           LK+W+  + +F+   TS  Q+  P+   LCISDC+TCPV+C+            PPP + 
Sbjct: 21  LKIWIPGLVIFAINVTSEDQIEGPSTGTLCISDCTTCPVICSPPPPPLLVPHPPPPPPVP 80

Query: 68  S--------------PPRNYIPPPPPPEFYGGYMTP-----SSYSFWAPPPPPVGVYFSG 126
           S              PP   +P PPPP     Y  P     +SYS   PPP P  +YFS 
Sbjct: 81  SVHHSPPYAYSTHAPPPPLLVPYPPPPPLLVPYPPPPPPKSTSYSSRGPPPAPF-LYFSN 140

BLAST of Sed0023029 vs. TAIR 10
Match: AT5G11990.1 (proline-rich family protein )

HSP 1 Score: 48.5 bits (114), Expect = 5.3e-06
Identity = 48/153 (31.37%), Postives = 65/153 (42.48%), Query Frame = 0

Query: 12  VLAVALFSWPTSNGQVAVPAQLCISDCSTCPVVCT--------------------AATTT 71
           V+ + + S P+    V  P  LCIS+CSTCP +C+                    +++  
Sbjct: 11  VMVMVVASSPSDQTNVLTP--LCISECSTCPTICSPPPSKPSPSMSPPPSPSLPLSSSPP 70

Query: 72  TPPPALQSPP---RNYIPP-------PPPPEFYGGYMTPSSYSFWAPPPP--------PV 127
            PPP   SPP   ++  PP       PPPP FY    TP       PPPP        P 
Sbjct: 71  PPPPHKHSPPPLSQSLSPPPLITVIHPPPPRFYYFESTP-------PPPPLSPDGKGSPP 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649911.16.7e-2759.85hypothetical protein Csa_012510 [Cucumis sativus][more]
XP_022981722.18.7e-2760.00leucine-rich repeat extensin-like protein 1 [Cucurbita maxima][more]
KAG6608366.11.5e-2660.74Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma su... [more]
XP_022940707.12.8e-2557.86leucine-rich repeat extensin-like protein 2 [Cucurbita moschata][more]
XP_023523402.13.4e-2359.20leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L0543.2e-2759.85Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240... [more]
A0A6J1IUS74.2e-2760.00leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1FKD31.4e-2557.86leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A2N9HA717.5e-1642.03Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1[more]
A0A6A1VUN32.3e-1241.10Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR4G020414 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G11990.15.3e-0631.37proline-rich family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0023029.1Sed0023029.1mRNA