Sed0023013 (gene) Chayote v1

Overview


Name	Sed0023013
Type	gene
Organism	Sechium edule (Chayote v1)
Description	cyclin-dependent protein kinase inhibitor SMR13-like
Location	LG01: 61216987 .. 61217573 (-)
RNA-Seq Expression	Sed0023013
Synteny	Sed0023013

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGAACCCTCTACTTTCTCTCTCCTCTTTCTCTCTCTAGGGTTTTGTGGGTTTATTTCTTACCTTCAATCCCTTCTCTTTAATGGGTATCTTCCAAAATTCTCTGAATCCCTTCTCCTTTTAGCTCAAATTCCTTCTAAAGCTTCAATCTTTGCAGAACAGAGACCTCTGTTTTTTTACCCTTTTCAAGGCTCTGTTCTTGGGTTGTGATTTTTTTTTTTTTTAGTAATTTCTTTGAAAAATGGCGCCTTTAGGAGCAAAAATGGCTACAAGAACAAGAAGAAATCTACCCAATTTGAAGCTGAATAAGAAAATGAAGAAGACGACGGCGACGGCGACGGCAAAGAAGAGGCAGATTCCGGCGATAGAAACCGACGGAGTTCAATTTCCCGACGAGGAGGGCGGCGGGTGCAGCACTCCGAGAGCAGAGAGATTCAGAATCCCGGAGACGGTGACGTGTCCGCCGGCGCCGAAGAAGCAAAGAGCCGTTTCCGATTGCTCGTTCCGGCGGTCCCCGATAGCGTTTTTTGCCCCTCCGGAATTAGAGCTTCTATTCTTCGCGTCTCTGCCGGACATTTCAGTTTGA

mRNA sequence

ATTTGAACCCTCTACTTTCTCTCTCCTCTTTCTCTCTCTAGGGTTTTGTGGGTTTATTTCTTACCTTCAATCCCTTCTCTTTAATGGGTATCTTCCAAAATTCTCTGAATCCCTTCTCCTTTTAGCTCAAATTCCTTCTAAAGCTTCAATCTTTGCAGAACAGAGACCTCTGTTTTTTTACCCTTTTCAAGGCTCTGTTCTTGGGTTGTGATTTTTTTTTTTTTTAGTAATTTCTTTGAAAAATGGCGCCTTTAGGAGCAAAAATGGCTACAAGAACAAGAAGAAATCTACCCAATTTGAAGCTGAATAAGAAAATGAAGAAGACGACGGCGACGGCGACGGCAAAGAAGAGGCAGATTCCGGCGATAGAAACCGACGGAGTTCAATTTCCCGACGAGGAGGGCGGCGGGTGCAGCACTCCGAGAGCAGAGAGATTCAGAATCCCGGAGACGGTGACGTGTCCGCCGGCGCCGAAGAAGCAAAGAGCCGTTTCCGATTGCTCGTTCCGGCGGTCCCCGATAGCGTTTTTTGCCCCTCCGGAATTAGAGCTTCTATTCTTCGCGTCTCTGCCGGACATTTCAGTTTGA

Coding sequence (CDS)

ATGGCGCCTTTAGGAGCAAAAATGGCTACAAGAACAAGAAGAAATCTACCCAATTTGAAGCTGAATAAGAAAATGAAGAAGACGACGGCGACGGCGACGGCAAAGAAGAGGCAGATTCCGGCGATAGAAACCGACGGAGTTCAATTTCCCGACGAGGAGGGCGGCGGGTGCAGCACTCCGAGAGCAGAGAGATTCAGAATCCCGGAGACGGTGACGTGTCCGCCGGCGCCGAAGAAGCAAAGAGCCGTTTCCGATTGCTCGTTCCGGCGGTCCCCGATAGCGTTTTTTGCCCCTCCGGAATTAGAGCTTCTATTCTTCGCGTCTCTGCCGGACATTTCAGTTTGA

Protein sequence

MAPLGAKMATRTRRNLPNLKLNKKMKKTTATATAKKRQIPAIETDGVQFPDEEGGGCSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLFFASLPDISV

Homology

[Close]

BLAST of Sed0023013 vs. NCBI nr
Match: XP_022958378.1 (cyclin-dependent protein kinase inhibitor SMR13-like [Cucurbita moschata])

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-33
Identity = 80/115 (69.57%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MAPLGAKMATRTRRNLPNLKLNKKMKKTTATATAKKRQIPAIETDGVQFPDEE-GGGCST 60
           MAP GAKMATR RRN+   K+NKK+KKT  T    + QIP  + D VQFPD++ GGG ST
Sbjct: 1   MAPSGAKMATRPRRNIRTSKVNKKIKKT--TTKKPQNQIPPPQNDVVQFPDDDGGGGYST 60

Query: 61  PRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLFFASLPDISV 115
           P+AERFRIPE +TCPP PKKQR +SDCSFRRSPIAFFAPPELEL FF + PDISV
Sbjct: 61  PKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 113

[Close]

BLAST of Sed0023013 vs. NCBI nr
Match: KAG6605917.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.8 bits (382), Expect = 3.7e-33
Identity = 80/118 (67.80%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 1   MAPLGAKMATRTRRNLPNLKLNKKMKKTTATATAK-KRQIPAIETDGVQFPDEE---GGG 60
           MAP G KMATR RRN+   KLNKK+KKTT     + + QIP  + D VQFPD++   GGG
Sbjct: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDGGGGG 60

Query: 61  CSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLFFASLPDISV 115
            STP+AERFRIPE +TCPP PKKQR +SDCSFRRSPIAFFAPPELEL FF + PDISV
Sbjct: 61  YSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 118

[Close]

BLAST of Sed0023013 vs. NCBI nr
Match: KAG7035865.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.6 bits (379), Expect = 8.2e-33
Identity = 80/121 (66.12%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 1   MAPLGAKMATRTRRNLPNLKLNKKMKKTTATATAK-KRQIPAIETDGVQFPDEE------ 60
           MAP G KMATR RRN+   KLNKK+KKTT     + + QIP  + D VQFPD++      
Sbjct: 1   MAPSGGKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDDDGGGG 60

Query: 61  GGGCSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLFFASLPDIS 115
           GGG STP+AERFRIPE +TCPP PKKQR +SDCSFRRSPIAFFAPPELEL FF + PDIS
Sbjct: 61  GGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDIS 120

[Close]

BLAST of Sed0023013 vs. NCBI nr
Match: XP_022996084.1 (cyclin-dependent protein kinase inhibitor SMR9-like [Cucurbita maxima])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 80/114 (70.18%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 8   MATRTRRNLPNLKLNKKMKKTTATATAK-KRQIPAIETDGVQFPDEE------GGGCSTP 67
           MATR RRN+PN KLNKKMKKTT     + + QIP  + D VQFPD++      GGG STP
Sbjct: 1   MATRPRRNIPNSKLNKKMKKTTTKKPQQPQNQIPPPQNDVVQFPDDDFDNDDVGGGYSTP 60

Query: 68  RAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLFFASLPDISV 115
           +AERFRIPE +TCPP PKKQR VSDCSFRRSPIAFFAPPELEL FF S PDISV
Sbjct: 61  KAERFRIPEILTCPPGPKKQRPVSDCSFRRSPIAFFAPPELELFFFISRPDISV 114

[Close]

BLAST of Sed0023013 vs. NCBI nr
Match: KAG7010272.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-32
Identity = 83/119 (69.75%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 1   MAPLGAKMATRTRRNLPNLKLNKKMKKTTATATAKKRQIP-AIETDGVQFPDEE---GGG 60
           MAP G KMATRTR NLPNLKLNKK+KKT      K +QIP AI  D V F D+     GG
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQKLKQIPAAIPNDAVHFTDDSTDIDGG 60

Query: 61  CSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLFFA-SLPDISV 115
           CSTP+AERFRIPE +TCPPAPKK R  SDCS RRSPIAFFAPPELEL F A  +PDISV
Sbjct: 61  CSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDISV 119

[Close]

BLAST of Sed0023013 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-13
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 55  GGCSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLF 106
           GGC TP+A++ RIPE +TCPPAPKKQR   +C  RR  I FFAPPE+EL F
Sbjct: 52  GGCCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Sed0023013 vs. ExPASy Swiss-Prot
Match: Q3ECS5 (Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 GN=SMR9 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-11
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 17  PNLKLNKKMKKTTATATAKKRQIPAIETDGVQFPDEEGGGCSTPRAERFRIPETVTCPPA 76
           P   +N  +  T++T+T+         +     P     GC TP  E+ RIPE +TCPPA
Sbjct: 27  PPCSINSDVTSTSSTSTSP-------TSTATPSPVSAESGCCTP--EKSRIPEMLTCPPA 86

Query: 77  PKKQRAVSDCSFRRSPIAFFAPPELELLFFASL 110
           PKKQ+   +C+ RR  IAFFAPP++EL F  +L
Sbjct: 87  PKKQKVAQNCALRRRQIAFFAPPDVELFFVFAL 110

[Close]

BLAST of Sed0023013 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.4e-05
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 41  AIETDGVQFPDEEGGGCSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPE 100
           ++ +  V   ++E    +TP A+  RIP  + CPPAPKK++     S+   P  FF+PP+
Sbjct: 39  SLSSSAVSNTEDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSY--GPREFFSPPD 98

Query: 101 LELLF 106
           LE +F
Sbjct: 99  LETVF 101

[Close]

BLAST of Sed0023013 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.8e-05
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 56  GCSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSP--IAFFAPPELELLFFA 108
           GC+TPR+  +RIP    CPP P+K+  V     +R P    +F PP+LE LF+A
Sbjct: 14  GCTTPRSTMYRIPVASVCPPPPRKKLMVVR---KRDPPRNGYFQPPDLETLFYA 64

[Close]

BLAST of Sed0023013 vs. ExPASy TrEMBL
Match: A0A6J1H2X7 (cyclin-dependent protein kinase inhibitor SMR13-like OS=Cucurbita moschata OX=3662 GN=LOC111459621 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.0e-34
Identity = 80/115 (69.57%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MAPLGAKMATRTRRNLPNLKLNKKMKKTTATATAKKRQIPAIETDGVQFPDEE-GGGCST 60
           MAP GAKMATR RRN+   K+NKK+KKT  T    + QIP  + D VQFPD++ GGG ST
Sbjct: 1   MAPSGAKMATRPRRNIRTSKVNKKIKKT--TTKKPQNQIPPPQNDVVQFPDDDGGGGYST 60

Query: 61  PRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLFFASLPDISV 115
           P+AERFRIPE +TCPP PKKQR +SDCSFRRSPIAFFAPPELEL FF + PDISV
Sbjct: 61  PKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 113

[Close]

BLAST of Sed0023013 vs. ExPASy TrEMBL
Match: A0A6J1K7R4 (cyclin-dependent protein kinase inhibitor SMR9-like OS=Cucurbita maxima OX=3661 GN=LOC111491400 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.2e-33
Identity = 80/114 (70.18%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 8   MATRTRRNLPNLKLNKKMKKTTATATAK-KRQIPAIETDGVQFPDEE------GGGCSTP 67
           MATR RRN+PN KLNKKMKKTT     + + QIP  + D VQFPD++      GGG STP
Sbjct: 1   MATRPRRNIPNSKLNKKMKKTTTKKPQQPQNQIPPPQNDVVQFPDDDFDNDDVGGGYSTP 60

Query: 68  RAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLFFASLPDISV 115
           +AERFRIPE +TCPP PKKQR VSDCSFRRSPIAFFAPPELEL FF S PDISV
Sbjct: 61  KAERFRIPEILTCPPGPKKQRPVSDCSFRRSPIAFFAPPELELFFFISRPDISV 114

[Close]

BLAST of Sed0023013 vs. ExPASy TrEMBL
Match: A0A6J1JET4 (cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita maxima OX=3661 GN=LOC111484378 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.3e-31
Identity = 83/122 (68.03%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 1   MAPLGAKMATRTRRNLPNLKLNKKMKKT---TATATAKKRQIPA-IETDGVQFPD---EE 60
           MAP G KMATRTR NLPNLKLNKK+KKT         K +QIPA I  D V F D   + 
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQQQKLKQIPAVIPNDAVHFTDDCSDI 60

Query: 61  GGGCSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLFFA-SLPDI 115
            GGCSTP+AERFRIPE +TCPPAPKK R  SDCS RRSPIAFFAPPELEL F A  +PDI
Sbjct: 61  DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELELFFCALPVPDI 120

[Close]

BLAST of Sed0023013 vs. ExPASy TrEMBL
Match: A0A6J1FTJ6 (cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita moschata OX=3662 GN=LOC111448665 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 82/122 (67.21%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 1   MAPLGAKMATRTRRNLPNLKLNKKMKKT---TATATAKKRQIP-AIETDGVQFPDEE--- 60
           MAP G KMATRTR NLPNLKLNKK+KKT         K +QIP AI  D V F D+    
Sbjct: 1   MAPSGGKMATRTRANLPNLKLNKKIKKTKKQQQQQQQKLKQIPAAIPNDAVHFTDDSTDI 60

Query: 61  GGGCSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLFFA-SLPDI 115
            GGCSTP+AERFRIP+ +TCPPAPKK R  SDCS RRSPIAFFAPPELEL F A  +PDI
Sbjct: 61  DGGCSTPKAERFRIPDILTCPPAPKKPRPSSDCSLRRSPIAFFAPPELELFFCALPVPDI 120

[Close]

BLAST of Sed0023013 vs. ExPASy TrEMBL
Match: A0A0A0L0Q1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291940 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.4e-30
Identity = 81/121 (66.94%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 1   MAPLGAKMATR-TRRNLPNLKLNKKMKKTTATATAKKR---QIPAIETDGVQFPDE-EGG 60
           MAP GA+MATR TRR LPNLKL KK+KKTT      ++    +P  + D V+F DE   G
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60

Query: 61  GCSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLFFASL--PDIS 115
           GCSTP+AER RIPE +TCPPAPKK RAVSDCS RRSPIAFFAPPELEL FF +L  PDIS
Sbjct: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120

[Close]

BLAST of Sed0023013 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-14
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 55  GGCSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPELELLF 106
           GGC TP+A++ RIPE +TCPPAPKKQR   +C  RR  I FFAPPE+EL F
Sbjct: 52  GGCCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Sed0023013 vs. TAIR 10
Match: AT1G51355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 17  PNLKLNKKMKKTTATATAKKRQIPAIETDGVQFPDEEGGGCSTPRAERFRIPETVTCPPA 76
           P   +N  +  T++T+T+         +     P     GC TP  E+ RIPE +TCPPA
Sbjct: 27  PPCSINSDVTSTSSTSTSP-------TSTATPSPVSAESGCCTP--EKSRIPEMLTCPPA 86

Query: 77  PKKQRAVSDCSFRRSPIAFFAPPELELLFFASL 110
           PKKQ+   +C+ RR  IAFFAPP++EL F  +L
Sbjct: 87  PKKQKVAQNCALRRRQIAFFAPPDVELFFVFAL 110

[Close]

BLAST of Sed0023013 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.4e-06
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 41  AIETDGVQFPDEEGGGCSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPIAFFAPPE 100
           ++ +  V   ++E    +TP A+  RIP  + CPPAPKK++     S+   P  FF+PP+
Sbjct: 39  SLSSSAVSNTEDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSY--GPREFFSPPD 98

Query: 101 LELLF 106
           LE +F
Sbjct: 99  LETVF 101

[Close]

BLAST of Sed0023013 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 7.0e-06
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 56  GCSTPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSP--IAFFAPPELELLFFA 108
           GC+TPR+  +RIP    CPP P+K+  V     +R P    +F PP+LE LF+A
Sbjct: 14  GCTTPRSTMYRIPVASVCPPPPRKKLMVVR---KRDPPRNGYFQPPDLETLFYA 64

[Close]

BLAST of Sed0023013 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 31/75 (41.33%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 35  KKRQIPAIETDGVQFPDEEGGGCS-TPRAERFRIPETVTCPPAPKKQRAVSDCSFRRSPI 94
           K R  P I T+  +    E   CS TP A+  +IPE + CPPAP+K+R    C   RS +
Sbjct: 37  KLRAPPEIVTEVEEDCYNEEEECSTTPTAKETKIPELLECPPAPRKRRPALKC---RSNV 96

Query: 95  A--FFAPP-ELELLF 106
              FF PP +LE +F
Sbjct: 97  VREFFTPPSDLETVF 108

The following BLAST results are available for this feature:

BLAST of Sed0023013 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958378.1	1.7e-33	69.57	cyclin-dependent protein kinase inhibitor SMR13-like [Cucurbita moschata]	[more]
KAG6605917.1	3.7e-33	67.80	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]
KAG7035865.1	8.2e-33	66.12	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]
XP_022996084.1	1.1e-32	70.18	cyclin-dependent protein kinase inhibitor SMR9-like [Cucurbita maxima]	[more]
KAG7010272.1	1.4e-32	69.75	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]

BLAST of Sed0023013 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IWB3	1.5e-13	64.71	Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q3ECS5	1.8e-11	40.86	Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	3.4e-05	36.92	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q1JPP8	9.8e-05	44.44	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Sed0023013 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2X7	8.0e-34	69.57	cyclin-dependent protein kinase inhibitor SMR13-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1K7R4	5.2e-33	70.18	cyclin-dependent protein kinase inhibitor SMR9-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1JET4	6.3e-31	68.03	cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FTJ6	1.1e-30	67.21	cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0L0Q1	1.4e-30	66.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291940 PE=4 SV=1	[more]

BLAST of Sed0023013 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20898.1	1.1e-14	64.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G51355.1	1.3e-12	40.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G60783.1	2.4e-06	36.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G02220.1	7.0e-06	44.44	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G40460.1	1.3e-04	41.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	PANTHER	PTHR33142:SF8	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 22..108
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 22..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023013.1	Sed0023013.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus