Sed0022989 (gene) Chayote v1

Overview


Name	Sed0022989
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Cytochrome c oxidase subunit 2
Location	LG13: 18396875 .. 18399478 (-)
RNA-Seq Expression	Sed0022989
Synteny	Sed0022989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTCACTCACTTTTGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAACATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCGCACCACCAGGGTGCGAGCCACCCGAAAGCAAGCTATTACAGCGAGCGGCTGGAGCTGTAGGGAGCCGAGGAGCAAAGCAGTAGATAAGATCGAAGAAGGGGCCAGGCTCCCGGTGGAGCAGAGGAGACGGTTAGGATAACGAACTTGAAACGCGGAGCCCGAGCGGCCGGCGAGCGAGTGGTTAGTGGCCAATAGCGCCCTAGTTGATGGCATTCCTCTCCGCGGCTGGCACTCGAGGAACCACGGGGCACTCCATACGGAGCAAGCAAGTCTTGGGGATGAGACGCCCGCGCAAGGACCTCAATTCTCATTAGGAGGTCGAACCAAGGACCTATGGAAGTCGGGGCTACCCCCTCCCCATGGGCAACGCAACAGTGTCCTGAGGAAGGAGTTTAGAGGCCTTATAGTAGCACGGACTTATTTTTCTTTCTAGGTCATGCGAAGGGGGCCAGTCCAAGATCGTACTCTTGCTCTACAAAGACAAGAGACGCTCTCAACGGCTAGGCGCCACTCTCTTTCTGAGTTATTCCAGCTTTTGACTTTAGGTAACATAAATGAACAAGTTGATTTTGTATTCGTGCTGTGCTTCCGAAGGAGAAGGACCTGCAACGGCAGAGACTACTGACCCTCTTCTTGTTCCTAGCCGTCTGTTACGAGTCCGGGAAGCCAGGAATGAGGGATCCCTCAAAATAGAGAAGGGTGGGCAGGGCTTCCGCAAGGGCCTCCCCCCTCTTCCCGGTCAAGATAGATGGGAAGGAGCGCAGCGAAGCAAGCGAAGCAAGCTACTTATTAACGATATATATCGTTAATGAAATAAGGTTAAGAATAAATAAGTCAATCAGCTCAGCGGCCGGCCGGAAGCAGCTTTATCTTTATATATATATATAGGATAAGAAAGAAGCAAGACTGTAAAGGTGCTCAGCTCAGCAAGGGAGTTGTAGAGGAGAATAAAGTAGAGGTTTCAATATCTCGACCGTAAGGTGTAGAAGGAATCGACTGGAAAGGTGTAGGAGGAGCAAGAAAACGGATGCGCGTTGCTAACGCGCAACGGCTTTCGCGCTAGCGCGCTCGGCCGTTGCTTGTTAGGGAGAGGGAGAAAATATGGGGATAGAATATGGGTCAAGAAAGGGGTCAGCTTGCTGCTCGCTTTTTTCTCGCTTCCGAGAGGCCAAGGGATTGGATTTCACCTATGATCAGATCAGTGGGCTACCATAGTTGACTTTTTTCGTGGTGTTGTTGAAAGCGAATTTGGAAGTAGGCCTCGCTTTTCGGAGCAGCTCCCAGCTCACACTATGGTGGGGGAGGTGCCGTGAAGATCTAGGAGTGTGAGCAGTACGAGCTTCAAGGCTCCCATACTGTTTGGAGGGCAGGGGGCATAGATGCCAAACAAACCTGACCCCTATCTATCGTCGTAGAAGCAGTTCCTAGGAAAGATTATGGTTCTCGGGTATCCAATCAATTAATCCCCCAAACCGGGGAAGCTTAAGCGGAAATGAAAGGGTAGGGTGAGGGATAAGGGGGGAAGCCCCTAAATTGAAGGCTTCGCTCGCTCGCTCTAACGCTCGTTTATACGACTGCGAGTGGAGTGCATAAGCCCCTTTAGAGATAGGGGCGAGTACTACACGAGCTCGTAAGTCAAGTACGGAACGAGCCTTGTCTACGTTAGAGATAGGGAGAGGTGCGAATATGCTACTTTACCTTGTTTACGAGAGGTACGAAGTCGAGACTGTAAAGGATCGGGGCGACCTCGTCTTGCTTGCTTCTGGCGAAGCTTAACGCACTAGATAATCGGCATTATTTTATGGTAGGAATACTACTTTTAGGCCGACCACAATACAAGTCATGAGCGATAGCGAAGCCAAGCCGTATAAAGGCGAGCAGCCCAACTAGCAATAGCAAACGGCCTACTTATAGCCTCTTTTTCCCTTACTTACTCCCTATTCTCTCTTAAAGCTTGTAAAGCTCATAAAATGGAAATTCTTCACGTTTTCCTCAGCTCAGCTCAAAAGGCAAGGGGAATGAATTCGAGAACTTGATTGACATTGAAAGATATGTGTACCAAACAAGCAATATGCCGATTGATGTACCAGCCAAGCCAGCTCGACCGGGATATTTGATTGGACAGAAGAACAACGGATTGAACAGGACAGGACAACCGGGAAGGGAAGCCTGA

mRNA sequence

ATGGACGAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTCACTCACTTTTGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAACATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCGCACCACCAGGGTCACGGACTTATTTTTCTTTCTAGGTCATGCGAAGGGGGCCAGTCCAAGATCGTACTCTTGCTCTACAAAGACAAGAGACTTGATTTTGTATTCGTGCTGTGCTTCCGAAGGAGAAGGACCTGCAACGGCAGAGACTACTGACCCTCTTCTTGTTCCTAGCCGTCTGTTACGAGTCCGGGAAGCCAGGAATGAGGGATCCCTCAAAATAGAGAAGGGTGGGCAGGGCTTCCGCAAGGGCCTCCCCCCTCTTCCCGGTCAAGATAGATGGGAAGGAGCGCAGCGAAGCAAGCGAAGCAAGCTACTTATTAACGATATATATCATCAGTGGGCTACCATAGTTGACTTTTTTCGTGGTGTTGTTGAAAGCGAATTTGGAAGTAGGCCTCGCTTTTCGGAGCAGCTCCCAGCTCACACTATGGTGGGGGAGCTCAGCTCAAAAGGCAAGGGGAATGAATTCGAGAACTTGATTGACATTGAAAGATATGTGTACCAAACAAGCAATATGCCGATTGATGTACCAGCCAAGCCAGCTCGACCGGGATATTTGATTGGACAGAAGAACAACGGATTGAACAGGACAGGACAACCGGGAAGGGAAGCCTGA

Coding sequence (CDS)

ATGGACGAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTCACTCACTTTTGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAGATCTCCATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCGTGCGCCCGGAAACATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCGCACCACCAGGGTCACGGACTTATTTTTCTTTCTAGGTCATGCGAAGGGGGCCAGTCCAAGATCGTACTCTTGCTCTACAAAGACAAGAGACTTGATTTTGTATTCGTGCTGTGCTTCCGAAGGAGAAGGACCTGCAACGGCAGAGACTACTGACCCTCTTCTTGTTCCTAGCCGTCTGTTACGAGTCCGGGAAGCCAGGAATGAGGGATCCCTCAAAATAGAGAAGGGTGGGCAGGGCTTCCGCAAGGGCCTCCCCCCTCTTCCCGGTCAAGATAGATGGGAAGGAGCGCAGCGAAGCAAGCGAAGCAAGCTACTTATTAACGATATATATCATCAGTGGGCTACCATAGTTGACTTTTTTCGTGGTGTTGTTGAAAGCGAATTTGGAAGTAGGCCTCGCTTTTCGGAGCAGCTCCCAGCTCACACTATGGTGGGGGAGCTCAGCTCAAAAGGCAAGGGGAATGAATTCGAGAACTTGATTGACATTGAAAGATATGTGTACCAAACAAGCAATATGCCGATTGATGTACCAGCCAAGCCAGCTCGACCGGGATATTTGATTGGACAGAAGAACAACGGATTGAACAGGACAGGACAACCGGGAAGGGAAGCCTGA

Protein sequence

MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTRAPGNIGRLLSPLWLSRTTRVTDLFFFLGHAKGASPRSYSCSTKTRDLILYSCCASEGEGPATAETTDPLLVPSRLLRVREARNEGSLKIEKGGQGFRKGLPPLPGQDRWEGAQRSKRSKLLINDIYHQWATIVDFFRGVVESEFGSRPRFSEQLPAHTMVGELSSKGKGNEFENLIDIERYVYQTSNMPIDVPAKPARPGYLIGQKNNGLNRTGQPGREA

Homology

[Close]

BLAST of Sed0022989 vs. NCBI nr
Match: GFS28381.1 (hypothetical protein Acr_00g0001450 [Actinidia rufa])

HSP 1 Score: 369.0 bits (946), Expect = 4.5e-98
Identity = 200/288 (69.44%), Postives = 211/288 (73.26%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDD ELGQSRLLEVDN
Sbjct: 148 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDN 207

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK  LRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQ SI VQREGVYYGQCSEIC
Sbjct: 208 RVVVPAKIDLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQTSISVQREGVYYGQCSEIC 267

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSRTTR-----VTDLFFFLGHAKGASPRSYSCSTKTRDL 180
           GTNHAFTRAPGNIGRLLSPLWLSRTT+      + L      A G+     SC      +
Sbjct: 268 GTNHAFTRAPGNIGRLLSPLWLSRTTQGASYPRSKLLQRAAGAVGSRGARQSCEGGQSKI 327

Query: 181 ILY-------------------------SC-----------CASEGEGPATAETTDPLLV 240
           +L+                         SC            ++EGEGPATAETT+PLLV
Sbjct: 328 VLFLYKDNRRSQRLGATLFLSYSSFFMISCRDEQRKKKKRAVSAEGEGPATAETTEPLLV 387

Query: 241 PSRLLRVREARN---EGSLKIEKGGQGFRKGLPPLPGQDRWEGAQRSK 245
           PS LLRVREA N   EGSLKIEKGGQ FRK L PLPGQDRWEGA  SK
Sbjct: 388 PSLLLRVREAWNPQYEGSLKIEKGGQDFRKNLHPLPGQDRWEGALSSK 435

[Close]

BLAST of Sed0022989 vs. NCBI nr
Match: CAD5336188.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 318.5 bits (815), Expect = 6.9e-83
Identity = 183/281 (65.12%), Postives = 196/281 (69.75%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSY IPE+DLELGQSRLLEVDN
Sbjct: 132 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDN 191

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVT ADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC
Sbjct: 192 RVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 251

Query: 121 GTNHAFTRAPGNIGRLLSPL---------------------WLSRTTR--VTDLFFFLG- 180
           GTNHAFTRAPGNIGRLLSP                      W  R  R  V D       
Sbjct: 252 GTNHAFTRAPGNIGRLLSPTLAQPHHPGCEPPEKQAITVSGWSCREPRSKVVDKIEERAR 311

Query: 181 ----------HAKGASPR--------SYSCSTKTRDLILYSCCASEGEGPATAETTDPLL 237
                     H + AS R         +S   +T+D  L+   ++EGEGPATAETTDPLL
Sbjct: 312 HPVEQRGRALHTEQASLRDETPAQGPQFSLGGRTKD--LWKAVSAEGEGPATAETTDPLL 371

[Close]

BLAST of Sed0022989 vs. NCBI nr
Match: XP_015868752.1 (uncharacterized protein LOC107406162 [Ziziphus jujuba] >XP_015868754.1 uncharacterized protein LOC107406163 [Ziziphus jujuba])

HSP 1 Score: 301.2 bits (770), Expect = 1.1e-77
Identity = 144/147 (97.96%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN
Sbjct: 460 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 519

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 520 RVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 579

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSRTTR 148
           GTNHAFTRAPGNIGRLLSPLWLSRTTR
Sbjct: 580 GTNHAFTRAPGNIGRLLSPLWLSRTTR 606

[Close]

BLAST of Sed0022989 vs. NCBI nr
Match: WP_131747038.1 (cytochrome c oxidase subunit II [Candidatus Frankia meridionalis])

HSP 1 Score: 301.2 bits (770), Expect = 1.1e-77
Identity = 144/147 (97.96%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 226

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSRTTR 148
           GTNHAFTRAPGNIGR LSPLWLSRTTR
Sbjct: 227 GTNHAFTRAPGNIGRRLSPLWLSRTTR 253

[Close]

BLAST of Sed0022989 vs. NCBI nr
Match: XP_024925120.1 (uncharacterized protein LOC107406125 [Ziziphus jujuba])

HSP 1 Score: 301.2 bits (770), Expect = 1.1e-77
Identity = 144/147 (97.96%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 226

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSRTTR 148
           GTNHAFTRAPGNIGRLLSPLWLSRTTR
Sbjct: 227 GTNHAFTRAPGNIGRLLSPLWLSRTTR 253

[Close]

BLAST of Sed0022989 vs. ExPASy Swiss-Prot
Match: P05491 (Cytochrome c oxidase subunit 2 OS=Glycine max OX=3847 GN=COX2 PE=3 SV=2)

HSP 1 Score: 257.7 bits (657), Expect = 1.9e-67
Identity = 123/127 (96.85%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN
Sbjct: 106 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 165

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVTPADVPHSWAVPS GVKCDAVPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 166 RVVVPAKTHLRIIVTPADVPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 225

Query: 121 GTNHAFT 128
           GTNHAFT
Sbjct: 226 GTNHAFT 232

[Close]

BLAST of Sed0022989 vs. ExPASy Swiss-Prot
Match: P27168 (Cytochrome c oxidase subunit 2 OS=Daucus carota OX=4039 GN=COX2 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 7.2e-67
Identity = 123/127 (96.85%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDD ELGQSRLLEVDN
Sbjct: 108 MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDN 167

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVT ADVPHSWAVPSSGVKCDAVPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 168 RVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 227

Query: 121 GTNHAFT 128
           GTNHAFT
Sbjct: 228 GTNHAFT 234

[Close]

BLAST of Sed0022989 vs. ExPASy Swiss-Prot
Match: P08744 (Cytochrome c oxidase subunit 2 OS=Pisum sativum OX=3888 GN=COX2 PE=3 SV=2)

HSP 1 Score: 250.8 bits (639), Expect = 2.3e-65
Identity = 120/126 (95.24%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MD V+VDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQS LLEVDN
Sbjct: 106 MDGVLVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSGLLEVDN 165

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVTPADVPHSWAVPS GVKCDAVPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 166 RVVVPAKTHLRIIVTPADVPHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 225

Query: 121 GTNHAF 127
           GTNHAF
Sbjct: 226 GTNHAF 231

[Close]

BLAST of Sed0022989 vs. ExPASy Swiss-Prot
Match: P98012 (Cytochrome c oxidase subunit 2 OS=Beta vulgaris OX=161934 GN=COX2 PE=2 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 4.4e-64
Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYR+YEYSDYNSSDEQSLTFDSYTIPEDD ELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRSYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTH+RIIVT ADV HSWAVPSSGVKCDAVPGRLNQ SILVQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHIRIIVTSADVLHSWAVPSSGVKCDAVPGRLNQTSILVQREGVYYGQCSEIC 226

Query: 121 GTNHAF 127
           GTNHAF
Sbjct: 227 GTNHAF 232

[Close]

BLAST of Sed0022989 vs. ExPASy Swiss-Prot
Match: P93285 (Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana OX=3702 GN=COX2 PE=1 SV=2)

HSP 1 Score: 241.9 bits (616), Expect = 1.1e-62
Identity = 117/126 (92.86%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWY TYEYSDYNSSDEQSLTFDSY IPE+DLELGQ RLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQLRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVT ADV HSWAVPS GVKCDAVPGRLNQISILVQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 226

Query: 121 GTNHAF 127
           GTNHAF
Sbjct: 227 GTNHAF 232

[Close]

BLAST of Sed0022989 vs. ExPASy TrEMBL
Match: A0A7J0D8B7 (Cytochrome c oxidase subunit 2 OS=Actinidia rufa OX=165716 GN=Acr_00g0001450 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 2.2e-98
Identity = 200/288 (69.44%), Postives = 211/288 (73.26%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDD ELGQSRLLEVDN
Sbjct: 148 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDN 207

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAK  LRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQ SI VQREGVYYGQCSEIC
Sbjct: 208 RVVVPAKIDLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQTSISVQREGVYYGQCSEIC 267

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSRTTR-----VTDLFFFLGHAKGASPRSYSCSTKTRDL 180
           GTNHAFTRAPGNIGRLLSPLWLSRTT+      + L      A G+     SC      +
Sbjct: 268 GTNHAFTRAPGNIGRLLSPLWLSRTTQGASYPRSKLLQRAAGAVGSRGARQSCEGGQSKI 327

Query: 181 ILY-------------------------SC-----------CASEGEGPATAETTDPLLV 240
           +L+                         SC            ++EGEGPATAETT+PLLV
Sbjct: 328 VLFLYKDNRRSQRLGATLFLSYSSFFMISCRDEQRKKKKRAVSAEGEGPATAETTEPLLV 387

Query: 241 PSRLLRVREARN---EGSLKIEKGGQGFRKGLPPLPGQDRWEGAQRSK 245
           PS LLRVREA N   EGSLKIEKGGQ FRK L PLPGQDRWEGA  SK
Sbjct: 388 PSLLLRVREAWNPQYEGSLKIEKGGQDFRKNLHPLPGQDRWEGALSSK 435

[Close]

BLAST of Sed0022989 vs. ExPASy TrEMBL
Match: A0A7G2FQI1 (Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS23397 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 3.4e-83
Identity = 183/281 (65.12%), Postives = 196/281 (69.75%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSY IPE+DLELGQSRLLEVDN
Sbjct: 132 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDN 191

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVT ADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC
Sbjct: 192 RVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 251

Query: 121 GTNHAFTRAPGNIGRLLSPL---------------------WLSRTTR--VTDLFFFLG- 180
           GTNHAFTRAPGNIGRLLSP                      W  R  R  V D       
Sbjct: 252 GTNHAFTRAPGNIGRLLSPTLAQPHHPGCEPPEKQAITVSGWSCREPRSKVVDKIEERAR 311

Query: 181 ----------HAKGASPR--------SYSCSTKTRDLILYSCCASEGEGPATAETTDPLL 237
                     H + AS R         +S   +T+D  L+   ++EGEGPATAETTDPLL
Sbjct: 312 HPVEQRGRALHTEQASLRDETPAQGPQFSLGGRTKD--LWKAVSAEGEGPATAETTDPLL 371

[Close]

BLAST of Sed0022989 vs. ExPASy TrEMBL
Match: A0A2N9G5D7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22605 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 179/288 (62.15%), Postives = 192/288 (66.67%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLE GQSRLLEVDN
Sbjct: 267 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLEFGQSRLLEVDN 326

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQ--CSE 120
           RVV+PAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISI VQREGVYYGQ     
Sbjct: 327 RVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQPTAEP 386

Query: 121 ICGTNHAFTRAPGNIGRLLSPLWLSRTTRVTDLFFF----------------LGHAKGAS 180
                H     P     + +  W  R  R   +                     H + AS
Sbjct: 387 TLAQPHHPGCEPPEKQAITASGWSYREPRSKAVDKIEEGARLPVEQRRRNHGALHTEQAS 446

Query: 181 PR--------SYSCSTKTRDL---------------ILYSCCASEGEGPATAETTDPLLV 240
            R         +S   +T+DL               +     ++EGEGPATAET DP+LV
Sbjct: 447 LRDETPAQGPQFSLGGRTKDLWKSGLPRPHGQRNSVLRKEAVSAEGEGPATAETIDPILV 506

Query: 241 PSRLLRVREARN---EGSLKIEKGGQGFRKGLPPLPGQDRWEGAQRSK 245
           PSRLLRVREA N   EGSLKIEKGGQGFRKGL PLPGQDRWEGA  SK
Sbjct: 507 PSRLLRVREAWNPKYEGSLKIEKGGQGFRKGLTPLPGQDRWEGALSSK 554

[Close]

BLAST of Sed0022989 vs. ExPASy TrEMBL
Match: A0A6P3YWJ4 (Cytochrome c oxidase subunit 2 OS=Ziziphus jujuba OX=326968 GN=LOC107406162 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 5.6e-78
Identity = 144/147 (97.96%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN
Sbjct: 460 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 519

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 520 RVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 579

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSRTTR 148
           GTNHAFTRAPGNIGRLLSPLWLSRTTR
Sbjct: 580 GTNHAFTRAPGNIGRLLSPLWLSRTTR 606

[Close]

BLAST of Sed0022989 vs. ExPASy TrEMBL
Match: A0A6P6FU93 (Cytochrome c oxidase subunit 2 OS=Ziziphus jujuba OX=326968 GN=LOC107406125 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 5.6e-78
Identity = 144/147 (97.96%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISI VQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISISVQREGVYYGQCSEIC 226

Query: 121 GTNHAFTRAPGNIGRLLSPLWLSRTTR 148
           GTNHAFTRAPGNIGRLLSPLWLSRTTR
Sbjct: 227 GTNHAFTRAPGNIGRLLSPLWLSRTTR 253

[Close]

BLAST of Sed0022989 vs. TAIR 10
Match: ATMG00160.1 (cytochrome oxidase 2 )

HSP 1 Score: 255.4 bits (651), Expect = 6.7e-68
Identity = 122/127 (96.06%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWYRTYEYSDYNSSDEQSLTFDSY IPE+DLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 120
           RVV+PAKTHLRIIVT ADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC
Sbjct: 167 RVVVPAKTHLRIIVTSADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEIC 226

Query: 121 GTNHAFT 128
           GTNHAFT
Sbjct: 227 GTNHAFT 233

The following BLAST results are available for this feature:

BLAST of Sed0022989 vs. NCBI nr


Match Name	E-value	Identity	Description
GFS28381.1	4.5e-98	69.44	hypothetical protein Acr_00g0001450 [Actinidia rufa]	[more]
CAD5336188.1	6.9e-83	65.12	unnamed protein product [Arabidopsis thaliana]	[more]
XP_015868752.1	1.1e-77	97.96	uncharacterized protein LOC107406162 [Ziziphus jujuba] >XP_015868754.1 uncharact...	[more]
WP_131747038.1	1.1e-77	97.96	cytochrome c oxidase subunit II [Candidatus Frankia meridionalis]	[more]
XP_024925120.1	1.1e-77	97.96	uncharacterized protein LOC107406125 [Ziziphus jujuba]	[more]

BLAST of Sed0022989 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P05491	1.9e-67	96.85	Cytochrome c oxidase subunit 2 OS=Glycine max OX=3847 GN=COX2 PE=3 SV=2	[more]
P27168	7.2e-67	96.85	Cytochrome c oxidase subunit 2 OS=Daucus carota OX=4039 GN=COX2 PE=3 SV=1	[more]
P08744	2.3e-65	95.24	Cytochrome c oxidase subunit 2 OS=Pisum sativum OX=3888 GN=COX2 PE=3 SV=2	[more]
P98012	4.4e-64	93.65	Cytochrome c oxidase subunit 2 OS=Beta vulgaris OX=161934 GN=COX2 PE=2 SV=1	[more]
P93285	1.1e-62	92.86	Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana OX=3702 GN=COX2 PE=1 SV=2	[more]

BLAST of Sed0022989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J0D8B7	2.2e-98	69.44	Cytochrome c oxidase subunit 2 OS=Actinidia rufa OX=165716 GN=Acr_00g0001450 PE=...	[more]
A0A7G2FQI1	3.4e-83	65.12	Cytochrome c oxidase subunit 2 OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS23...	[more]
A0A2N9G5D7	1.4e-81	62.15	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22605 PE=4 SV=1	[more]
A0A6P3YWJ4	5.6e-78	97.96	Cytochrome c oxidase subunit 2 OS=Ziziphus jujuba OX=326968 GN=LOC107406162 PE=3...	[more]
A0A6P6FU93	5.6e-78	97.96	Cytochrome c oxidase subunit 2 OS=Ziziphus jujuba OX=326968 GN=LOC107406125 PE=3...	[more]

BLAST of Sed0022989 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00160.1	6.7e-68	96.06	cytochrome oxidase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01166	CYCOXIDASEII	coord: 98..115 score: 57.87 coord: 54..75 score: 61.01 coord: 116..133 score: 49.35 coord: 78..98 score: 73.78 coord: 6..25 score: 64.43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..348
None	No IPR available	PANTHER	PTHR22888	CYTOCHROME C OXIDASE, SUBUNIT II	coord: 1..128
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 7..133 e-value: 8.5E-40 score: 137.7
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 7..126
IPR002429	Cytochrome c oxidase subunit II-like C-terminal	PFAM	PF00116	COX2	coord: 10..126 e-value: 1.3E-52 score: 176.8
IPR002429	Cytochrome c oxidase subunit II-like C-terminal	PROSITE	PS50857	COX2_CUA	coord: 7..147 score: 39.229656
IPR034210	Cytochrome c oxidase subunit 2, C-terminal	CDD	cd13912	CcO_II_C	coord: 8..126 e-value: 3.71041E-79 score: 236.313

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022989.1	Sed0022989.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0070469	respirasome
cellular_component	GO:0016020	membrane
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004129	cytochrome-c oxidase activity