Sed0022895 (gene) Chayote v1

Overview
NameSed0022895
Typegene
OrganismSechium edule (Chayote v1)
Descriptioncyclin-dependent protein kinase inhibitor SMR10-like
LocationLG01: 6391373 .. 6391913 (+)
RNA-Seq ExpressionSed0022895
SyntenySed0022895
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTAATAATCCCCTTTCTCAGGACCTTTCATTTGGAATTTCTTTTTCTAAATGGAGAAAGAAAGTTGCAAAGAAGACAAGTTTGAGATTTTAGTGTCCACTTGGGAGTTAAGGTTGCTGTTGCCGAGTTCTTGTTTACAACGGGAGGAAGAAGAAAATCGAGACGATGATTTAGTGAAGACTCCGAGATCTTTGGAACCTACGACGAGTCTAAAGTGTCCATCGCCACCGAGAAAACCGAAGAGGTTGCCATCGGCGAAACGGAAGGCAAGCGACGGGCGGGCAGTTTTGATGTCACATGATTATCTATTCGGGCAAATGGGGTTGGATTTGGAGTTGCTATTCCCTTCCAATCTTCTTGGCGGTAAGATTGTTAAGAAGGTTAAACGATTGGAGTGATGTGAAGTTGCGAAGTTTCTTTTCAATTTGGTGTAGTTTTTTCTTTGATGTAATTTTAAATATTTTAATGTATGTGTCATATTTATTCTTATCATCAATTGGTGATGAGTTTGAAGCTTCCTGATTTTACTTACTTCAG

mRNA sequence

ATGGCCTAATAATCCCCTTTCTCAGGACCTTTCATTTGGAATTTCTTTTTCTAAATGGAGAAAGAAAGTTGCAAAGAAGACAAGTTTGAGATTTTAGTGTCCACTTGGGAGTTAAGGTTGCTGTTGCCGAGTTCTTGTTTACAACGGGAGGAAGAAGAAAATCGAGACGATGATTTAGTGAAGACTCCGAGATCTTTGGAACCTACGACGAGTCTAAAGTGTCCATCGCCACCGAGAAAACCGAAGAGGTTGCCATCGGCGAAACGGAAGGCAAGCGACGGGCGGGCAGTTTTGATGTCACATGATTATCTATTCGGGCAAATGGGGTTGGATTTGGAGTTGCTATTCCCTTCCAATCTTCTTGGCGGTAAGATTGTTAAGAAGGTTAAACGATTGGAGTGATGTGAAGTTGCGAAGTTTCTTTTCAATTTGGTGTAGTTTTTTCTTTGATGTAATTTTAAATATTTTAATGTATGTGTCATATTTATTCTTATCATCAATTGGTGATGAGTTTGAAGCTTCCTGATTTTACTTACTTCAG

Coding sequence (CDS)

ATGGAGAAAGAAAGTTGCAAAGAAGACAAGTTTGAGATTTTAGTGTCCACTTGGGAGTTAAGGTTGCTGTTGCCGAGTTCTTGTTTACAACGGGAGGAAGAAGAAAATCGAGACGATGATTTAGTGAAGACTCCGAGATCTTTGGAACCTACGACGAGTCTAAAGTGTCCATCGCCACCGAGAAAACCGAAGAGGTTGCCATCGGCGAAACGGAAGGCAAGCGACGGGCGGGCAGTTTTGATGTCACATGATTATCTATTCGGGCAAATGGGGTTGGATTTGGAGTTGCTATTCCCTTCCAATCTTCTTGGCGGTAAGATTGTTAAGAAGGTTAAACGATTGGAGTGA

Protein sequence

MEKESCKEDKFEILVSTWELRLLLPSSCLQREEEENRDDDLVKTPRSLEPTTSLKCPSPPRKPKRLPSAKRKASDGRAVLMSHDYLFGQMGLDLELLFPSNLLGGKIVKKVKRLE
Homology
BLAST of Sed0022895 vs. NCBI nr
Match: XP_022947800.1 (cyclin-dependent protein kinase inhibitor SMR10-like [Cucurbita moschata])

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-28
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 0

Query: 7   KEDKFEILVSTWELRLLLPSSCLQREEEENRD-----DDLVKTPRSLEPTTSLKCPSPPR 66
           KEDKFEIL+ST EL+  L SSC +RE+E+ ++     DD VKTPRSLEP   L+CP PPR
Sbjct: 6   KEDKFEILLSTLELK--LQSSCFRREDEDEKEEEDCRDDFVKTPRSLEPPAVLECPPPPR 65

Query: 67  KPKRLPSAKRKASDGRAVLMSHDYLFGQMGLDLELLFPSNLL-GGKIVKKVKR 114
           KP+R PSAKRKA D R++ MSH  LFG+M +DLELLFPSN L GG+IVKKVKR
Sbjct: 66  KPRRFPSAKRKAGDSRSIFMSHHCLFGEMEVDLELLFPSNQLHGGRIVKKVKR 116

BLAST of Sed0022895 vs. NCBI nr
Match: XP_023006801.1 (cyclin-dependent protein kinase inhibitor SMR14-like [Cucurbita maxima])

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-28
Identity = 76/117 (64.96%), Postives = 89/117 (76.07%), Query Frame = 0

Query: 1   MEKESCKEDKFEILVSTWELRLLLPSSCLQREEEENRD---DDLVKTPRSLEPTTSLKCP 60
           ME    KEDKFEIL+ST EL+  L SSC + E+EE  +   DD VKTPRSLEP   L+CP
Sbjct: 1   MEHHPQKEDKFEILLSTLELK--LQSSCFRHEDEEEEEDCRDDFVKTPRSLEPAVVLQCP 60

Query: 61  SPPRKPKRLPSAKRKASDGRAVLMSHDYLFGQMGLDLELLFPSN-LLGGKIVKKVKR 114
            PPRKP+RLPSAKRKA  GR++ MSH+ LF +M +DLELLFPSN L GG+IVKKVKR
Sbjct: 61  PPPRKPRRLPSAKRKAGVGRSIFMSHNCLFREMEVDLELLFPSNQLYGGRIVKKVKR 115

BLAST of Sed0022895 vs. NCBI nr
Match: KAG6605463.1 (hypothetical protein SDJN03_02780, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-27
Identity = 75/113 (66.37%), Postives = 86/113 (76.11%), Query Frame = 0

Query: 7   KEDKFEILVSTWELRLLLPSSCLQ-----REEEENRDDDLVKTPRSLEPTTSLKCPSPPR 66
           KEDKFEIL+ST EL+  L SSC +      EEEE+  DD VKTPRSLEP   L+CP PPR
Sbjct: 6   KEDKFEILLSTLELK--LQSSCFRHEDEDEEEEEDCRDDFVKTPRSLEPPAVLECPPPPR 65

Query: 67  KPKRLPSAKRKASDGRAVLMSHDYLFGQMGLDLELLFPSNLL-GGKIVKKVKR 114
           KP+R PSAKRKA D R++ MSH  LFG+M +DLELLFPSN L GG+IVKKVKR
Sbjct: 66  KPRRFPSAKRKAGDSRSIFMSHHCLFGEMEVDLELLFPSNQLHGGRIVKKVKR 116

BLAST of Sed0022895 vs. NCBI nr
Match: XP_023532326.1 (cyclin-dependent protein kinase inhibitor SMR14 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-27
Identity = 73/112 (65.18%), Postives = 86/112 (76.79%), Query Frame = 0

Query: 7   KEDKFEILVSTWELRLLLPSSCLQREEEENRD----DDLVKTPRSLEPTTSLKCPSPPRK 66
           KEDKFEIL+ST EL+  L SSC + E+EE  +    DD VKTPRSL+P   L+CP PPRK
Sbjct: 6   KEDKFEILLSTLELK--LQSSCFRHEDEEEEEEDCRDDFVKTPRSLKPPAVLECPPPPRK 65

Query: 67  PKRLPSAKRKASDGRAVLMSHDYLFGQMGLDLELLFPSNLL-GGKIVKKVKR 114
           P+RLPS KRKA  GR++ MSH  LFG+M +DLELLFPSN L GG+IVKKVKR
Sbjct: 66  PRRLPSMKRKAGGGRSIFMSHHCLFGEMEVDLELLFPSNQLHGGRIVKKVKR 115

BLAST of Sed0022895 vs. NCBI nr
Match: KAG6570710.1 (hypothetical protein SDJN03_29625, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 5.4e-24
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 0

Query: 4   ESCKEDKFEILVSTWELRLLLPSSCLQREEEENRD----DDLVKTPRSLEPTTSLKCPSP 63
           E  KEDKFEIL+ST ELRL L S CL+ EEEE+ D    DDLVKTPRSLEP   L+CP P
Sbjct: 5   EDPKEDKFEILLSTLELRLPLSSFCLRPEEEEDNDEARPDDLVKTPRSLEPAAILECPPP 64

Query: 64  PRKPKRLPSAKRKASDGRAVLMSHDYLFGQMGLDLELLFPSNL 103
           PRKP+RLPS +++ + GR   M HDY+FG+M   LE+LFPSNL
Sbjct: 65  PRKPRRLPSVRKRKAGGRLTFMPHDYVFGEM-KSLEVLFPSNL 106

BLAST of Sed0022895 vs. ExPASy TrEMBL
Match: A0A6J1KYS4 (cyclin-dependent protein kinase inhibitor SMR14-like OS=Cucurbita maxima OX=3661 GN=LOC111499465 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.8e-29
Identity = 76/117 (64.96%), Postives = 89/117 (76.07%), Query Frame = 0

Query: 1   MEKESCKEDKFEILVSTWELRLLLPSSCLQREEEENRD---DDLVKTPRSLEPTTSLKCP 60
           ME    KEDKFEIL+ST EL+  L SSC + E+EE  +   DD VKTPRSLEP   L+CP
Sbjct: 1   MEHHPQKEDKFEILLSTLELK--LQSSCFRHEDEEEEEDCRDDFVKTPRSLEPAVVLQCP 60

Query: 61  SPPRKPKRLPSAKRKASDGRAVLMSHDYLFGQMGLDLELLFPSN-LLGGKIVKKVKR 114
            PPRKP+RLPSAKRKA  GR++ MSH+ LF +M +DLELLFPSN L GG+IVKKVKR
Sbjct: 61  PPPRKPRRLPSAKRKAGVGRSIFMSHNCLFREMEVDLELLFPSNQLYGGRIVKKVKR 115

BLAST of Sed0022895 vs. ExPASy TrEMBL
Match: A0A6J1G7X1 (cyclin-dependent protein kinase inhibitor SMR10-like OS=Cucurbita moschata OX=3662 GN=LOC111451555 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.8e-29
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 0

Query: 7   KEDKFEILVSTWELRLLLPSSCLQREEEENRD-----DDLVKTPRSLEPTTSLKCPSPPR 66
           KEDKFEIL+ST EL+  L SSC +RE+E+ ++     DD VKTPRSLEP   L+CP PPR
Sbjct: 6   KEDKFEILLSTLELK--LQSSCFRREDEDEKEEEDCRDDFVKTPRSLEPPAVLECPPPPR 65

Query: 67  KPKRLPSAKRKASDGRAVLMSHDYLFGQMGLDLELLFPSNLL-GGKIVKKVKR 114
           KP+R PSAKRKA D R++ MSH  LFG+M +DLELLFPSN L GG+IVKKVKR
Sbjct: 66  KPRRFPSAKRKAGDSRSIFMSHHCLFGEMEVDLELLFPSNQLHGGRIVKKVKR 116

BLAST of Sed0022895 vs. ExPASy TrEMBL
Match: A0A0A0KHB1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190470 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = 0

Query: 7   KEDKFEILVSTWELRLLLP---SSCL-QREEEENRDDDLVKTPRSLEPTT-SLKCPSPPR 66
           K +KFEIL+ST ELRL LP     CL  +E+E +R DDL+KTPRSLEPT+  L+CP PPR
Sbjct: 11  KLEKFEILLSTLELRLPLPLPSFCCLGDKEKEVDRGDDLMKTPRSLEPTSVVLQCPPPPR 70

Query: 67  KPKRLPS-AKRKA--SDGRAVLMSHDYLFGQMGLDLELLFPSNLLGGKIVKKVKRLE 116
           KP+R PS AKRKA    GR++LMSHDY F    ++L+ LFPSN++GGKIVKK+K  E
Sbjct: 71  KPRRFPSAAKRKAGGGGGRSILMSHDYFF--RDVELDWLFPSNVVGGKIVKKIKGAE 125

BLAST of Sed0022895 vs. ExPASy TrEMBL
Match: A0A3N7FK75 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G030200 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.5e-08
Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 0

Query: 1   MEKESCKEDKFEILVSTWELRLLLPS-SCLQREEEENRDDDLVKTPRSLEPTTSL--KCP 60
           +EKE  +ED+ EI V T  L++ LPS    Q E++++ DDD  KTP SL+    +  +CP
Sbjct: 58  LEKEEKQEDECEISVPT--LKIKLPSVEAFQIEDDKDDDDDGFKTPTSLDRKIPVIFQCP 117

Query: 61  SPPRKPKRLPSAKRKASDGRAVLMSHDYLFGQMGLDLELLFPSNL---LGGKIVKKVKR 114
             PRKPK LPSAKRK+   R +L         +  ++E LFP  L   LGGKI KKV++
Sbjct: 118 PAPRKPKSLPSAKRKSPQRRVLL--------DLSNEIESLFPPALAGDLGGKI-KKVRQ 165

BLAST of Sed0022895 vs. ExPASy TrEMBL
Match: A0A5N5LFK3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_013780 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.2e-06
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 0

Query: 1   MEKESCKEDKFEILVSTWELRLLLPS-SCLQREEEENRDDDLVKTPRSLEPTTSL--KCP 60
           +E+E  +ED  E+ V T  L++ LPS    Q E++++ DDD  KTP SL+    +  +CP
Sbjct: 251 VEEEEEQEDDCEVSVPT--LKIKLPSVEAFQIEDDKDDDDDGFKTPTSLDRKIPVIFQCP 310

Query: 61  SPPRKPKRLPSAKRKASDGRAVLMSHDYLFGQMGLDLELLF---PSNLLGGKIVKKVK 113
             PRKPK LPS KRK++  R +L         +  ++E LF   P+  LGGKI KKV+
Sbjct: 311 PAPRKPKSLPSTKRKSAQRRVLL--------DLSNEIESLFPPAPAGDLGGKI-KKVR 357

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022947800.11.6e-2865.49cyclin-dependent protein kinase inhibitor SMR10-like [Cucurbita moschata][more]
XP_023006801.11.6e-2864.96cyclin-dependent protein kinase inhibitor SMR14-like [Cucurbita maxima][more]
KAG6605463.11.0e-2766.37hypothetical protein SDJN03_02780, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023532326.11.8e-2765.18cyclin-dependent protein kinase inhibitor SMR14 [Cucurbita pepo subsp. pepo][more]
KAG6570710.15.4e-2463.11hypothetical protein SDJN03_29625, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KYS47.8e-2964.96cyclin-dependent protein kinase inhibitor SMR14-like OS=Cucurbita maxima OX=3661... [more]
A0A6J1G7X17.8e-2965.49cyclin-dependent protein kinase inhibitor SMR10-like OS=Cucurbita moschata OX=36... [more]
A0A0A0KHB11.4e-2260.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190470 PE=4 SV=1[more]
A0A3N7FK754.5e-0843.70Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G030200 PE=4 ... [more]
A0A5N5LFK33.2e-0640.68Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_013780 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022895.1Sed0022895.1mRNA