Sed0022884 (gene) Chayote v1

Overview


Name	Sed0022884
Type	gene
Organism	Sechium edule (Chayote v1)
Description	TPR_REGION domain-containing protein
Location	LG09: 24455817 .. 24457924 (-)
RNA-Seq Expression	Sed0022884
Synteny	Sed0022884

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACAATGAAAAGAAAAAAAGTTGTGTGATGTACATCCACAGCTCATCAACTACCTTCACCTTCCTTCATCTTCAACCATACAAAATACATATTATAATTTTATATACCAACTCCCTTCATCTCTCCCTCTTTACAAAAATCTTCTTCTTCCTCTATGCTGCTGAGGAGTTCTTCAACGCCGCTCCTAGGCTCTCTCCTCCCACCGGACCCCGTCGGAAAACCCTCCCCCTCCTCCTTCACTTTCCACTGCAACACCGTCTCCTCCCCCGCTGCCGCTTCTCTCCACTCCGACCACCACCGCCCCTCCGCTGCCTTTCGTAGAACCAACTCCGAAGGAAACCTTAATACCCTCTCCCATGCTCCTGATTCTGTGGAGGACTCCTCCTTTGATTCCTTCATTTCCAAGCCTAATCACCTCCGCCGCTCCCCTCTCCAATCCATTCCCTCGTTTTCGTTTTACGGTTCTAGAGGCACGGTTGAAGAAGAAGAAGAAGAAGATGATCATGATCATGATGAAGACGAGGACGAGGACGAGGGATGCTTTCACATCAAGAACGGGATGGAGAGTGCGATTCTGACTCCGGAGGTTAGAGCTATGGAACAAGCTTGGACTAGAGTCGCTTCTGGCAATGAGATGTATCTGGCGAGAGGGATTGGAATTGGAACTGGACTCGCTGGAGCAGGTGGTAGTGGTGGTGGTCGTCGTCCAGGCTCGAGTGGCAGTGGCGGCGGTGGAGGAGGGGGTGACCAACTATGCAGAATTCTTGTACCAGGCAACTTCTAATTTCTAACTTTGTGTGCTTCCATTTCTCTCCCTCTATGTAATTACCCATTTGATGATTTTTCCATTTGGTTTTGATGGCAGTGGAAAGGAGATCTGGTTGGAGCAGAAGAGTATTACAGCAGGGCCATTTTGATGGATTCAAAACATGGAAAAGTTTTGTCAAAATATGCAAAGTTAGTGTGGGAATTGTACCATGATCAACTAAAAGCCTCTTCTTACTTCCAACTCGCTATACAAGCTTCTCCACATGACAGGTCAAATCACACCCCACCTCCTTCTCAAACTTGTTATCCCAATGTTCACAAGTCCTGCCAACAACAACATAGCTTTGATAGCATTTGGTATACCCTAACAATCAAGATAGTCCTACTCTAACTATTGTTTAATTAAAAAGAACTAATCATTAAAGTTGGCTGAACCCAACAATAATTGATAAGTATTCTTGATCTAGAAGTTACATGCCCAAATAATCTAACTACCAAAAAACAAATTGATTTATTAGTTCATTTGTGGCAAAGTAACGAGTGTAGTATCATTACTAGAAATCTGATATTTCATGATACTTTTTTTTCTCCATTTTGCAAGAAAGAGAAATGAAAGGAGTCATAATAGGTCTAAAGATCATTGTTGTTTTTTTTTTTTTTGTATTTATCATTGTATTTTAGAGTCATAAAAGTACATTAGAATATGTGTTCAAGCTGGGAATGACGTTGTGGGAGCTTTGAGAAGAGAAATACTATATATTTTTTCGAGAATTTGAGGCCATGTTTGATCCATATGCTATATTTTATGTTTCTCTTTGACCCGTAATCTCCAAGTTCTTTTGGAATTATTCTGTGTGATTTTTGCCTCTAGTTCTTTTGTGTGAACTCTCTTTTTTTGTTCTCTTGTGTCCTTTCATTTTAAAGTTTGATTCTTTATGAAAAAATTTGACTTCTAGTTCATAAATCTGATGCAAAAAATTCCATATTGTGTGATTCTTCAGCCATGTGCAAGCAGCCTATGCCAATTTCCTGTGGGAAATAGAAGACGACGAGGAGGAGGACGACGACATAGTAAAAGAGATGGTGACACAAACTGGCAGGGCAGCTGCAACTGCTTGAGATGAAAGAGAATACCTTAAGCCATTTGCAGAATAATCTCCTCCTCACTCATAATAAAAAATAATTCTATCATGTTCAAAATTAATCCATGTCTGTAATACAATGAAAGTGAAGAAATGAACAAGAAAAACATAGGTAGGATAAGGCATAACCAAACAAGTTTATTTTAAGATTATTGAAAAAGGACCATCTTCTATGTCTTTCTCAAAGCATTCCTAAC

mRNA sequence

ATACAATGAAAAGAAAAAAAGTTGTGTGATGTACATCCACAGCTCATCAACTACCTTCACCTTCCTTCATCTTCAACCATACAAAATACATATTATAATTTTATATACCAACTCCCTTCATCTCTCCCTCTTTACAAAAATCTTCTTCTTCCTCTATGCTGCTGAGGAGTTCTTCAACGCCGCTCCTAGGCTCTCTCCTCCCACCGGACCCCGTCGGAAAACCCTCCCCCTCCTCCTTCACTTTCCACTGCAACACCGTCTCCTCCCCCGCTGCCGCTTCTCTCCACTCCGACCACCACCGCCCCTCCGCTGCCTTTCGTAGAACCAACTCCGAAGGAAACCTTAATACCCTCTCCCATGCTCCTGATTCTGTGGAGGACTCCTCCTTTGATTCCTTCATTTCCAAGCCTAATCACCTCCGCCGCTCCCCTCTCCAATCCATTCCCTCGTTTTCGTTTTACGGTTCTAGAGGCACGGTTGAAGAAGAAGAAGAAGAAGATGATCATGATCATGATGAAGACGAGGACGAGGACGAGGGATGCTTTCACATCAAGAACGGGATGGAGAGTGCGATTCTGACTCCGGAGGTTAGAGCTATGGAACAAGCTTGGACTAGAGTCGCTTCTGGCAATGAGATGTATCTGGCGAGAGGGATTGGAATTGGAACTGGACTCGCTGGAGCAGGTGGTAGTGGTGGTGGTCGTCGTCCAGGCTCGAGTGGCAGTGGCGGCGGTGGAGGAGGGGGTGACCAACTATGCAGAATTCTTGTACCAGTGGAAAGGAGATCTGGTTGGAGCAGAAGAGTATTACAGCAGGGCCATTTTGATGGATTCAAAACATGGAAAAGTTTTGTCAAAATATGCAAAGTTAGTGTGGGAATTGTACCATGATCAACTAAAAGCCTCTTCTTACTTCCAACTCGCTATACAAGCTTCTCCACATGACAGCCATGTGCAAGCAGCCTATGCCAATTTCCTGTGGGAAATAGAAGACGACGAGGAGGAGGACGACGACATAGTAAAAGAGATGGTGACACAAACTGGCAGGGCAGCTGCAACTGCTTGAGATGAAAGAGAATACCTTAAGCCATTTGCAGAATAATCTCCTCCTCACTCATAATAAAAAATAATTCTATCATGTTCAAAATTAATCCATGTCTGTAATACAATGAAAGTGAAGAAATGAACAAGAAAAACATAGGTAGGATAAGGCATAACCAAACAAGTTTATTTTAAGATTATTGAAAAAGGACCATCTTCTATGTCTTTCTCAAAGCATTCCTAAC

Coding sequence (CDS)

ATGCTGCTGAGGAGTTCTTCAACGCCGCTCCTAGGCTCTCTCCTCCCACCGGACCCCGTCGGAAAACCCTCCCCCTCCTCCTTCACTTTCCACTGCAACACCGTCTCCTCCCCCGCTGCCGCTTCTCTCCACTCCGACCACCACCGCCCCTCCGCTGCCTTTCGTAGAACCAACTCCGAAGGAAACCTTAATACCCTCTCCCATGCTCCTGATTCTGTGGAGGACTCCTCCTTTGATTCCTTCATTTCCAAGCCTAATCACCTCCGCCGCTCCCCTCTCCAATCCATTCCCTCGTTTTCGTTTTACGGTTCTAGAGGCACGGTTGAAGAAGAAGAAGAAGAAGATGATCATGATCATGATGAAGACGAGGACGAGGACGAGGGATGCTTTCACATCAAGAACGGGATGGAGAGTGCGATTCTGACTCCGGAGGTTAGAGCTATGGAACAAGCTTGGACTAGAGTCGCTTCTGGCAATGAGATGTATCTGGCGAGAGGGATTGGAATTGGAACTGGACTCGCTGGAGCAGGTGGTAGTGGTGGTGGTCGTCGTCCAGGCTCGAGTGGCAGTGGCGGCGGTGGAGGAGGGGGTGACCAACTATGCAGAATTCTTGTACCAGTGGAAAGGAGATCTGGTTGGAGCAGAAGAGTATTACAGCAGGGCCATTTTGATGGATTCAAAACATGGAAAAGTTTTGTCAAAATATGCAAAGTTAGTGTGGGAATTGTACCATGA

Protein sequence

MLLRSSSTPLLGSLLPPDPVGKPSPSSFTFHCNTVSSPAAASLHSDHHRPSAAFRRTNSEGNLNTLSHAPDSVEDSSFDSFISKPNHLRRSPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDEGCFHIKNGMESAILTPEVRAMEQAWTRVASGNEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQLCRILVPVERRSGWSRRVLQQGHFDGFKTWKSFVKICKVSVGIVP

Homology

[Close]

BLAST of Sed0022884 vs. NCBI nr
Match: XP_004140576.2 (uncharacterized protein LOC101206684 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-36
Identity = 125/235 (53.19%), Postives = 149/235 (63.40%), Query Frame = 0


Query: 1   MLLRSSSTPLLGSLLPPDP-----VGKPSPSSFTFHCN--------TVSSPAAASLHSDH 60
           MLL+SSSTPLLGSLLPPD       GK SPS+F FHCN        T +S +++   SDH
Sbjct: 1   MLLKSSSTPLLGSLLPPDHHHHDLHGKHSPSTFPFHCNNKPLSFSTTTASLSSSPAFSDH 60

Query: 61  HRPSA--AFRRTNSEGNLNTLSHAPDSV----EDSSFDSFISKPNH-----LRRSPLQSI 120
           HR +A   FRRTNSEGNLNT+SHA D +    +  SFDS   K +      L+RS LQ+I
Sbjct: 61  HRAAAPSGFRRTNSEGNLNTVSHASDVIDVHEDPFSFDSVNFKSSKKFCHGLKRSILQTI 120

Query: 121 PSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRV 180
           PSFSFYGSR   EEEEEE+D + D  E+ED  G F I    ++AI+TPEVRAMEQAW+RV
Sbjct: 121 PSFSFYGSRARTEEEEEEEDREIDGKEEEDGLGNFSI----DAAIVTPEVRAMEQAWSRV 180

Query: 181 ASG-----------NEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ 200
            +G            EMYLARG+GIG    G G  GGG R    G GGGGGGG++
Sbjct: 181 GAGGDGMGFVGDLRKEMYLARGLGIG---GGPGDGGGGGR--LQGGGGGGGGGEE 226

[Close]

BLAST of Sed0022884 vs. NCBI nr
Match: KAA0039891.1 (TPR_11 domain-containing protein [Cucumis melo var. makuwa] >TYK24611.1 Tetratricopeptide repeat-like superfamily protein, putative isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 4.9e-35
Identity = 122/234 (52.14%), Postives = 145/234 (61.97%), Query Frame = 0


Query: 1   MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHS 60
           MLL+SSSTPLLGSLLPPD        VGK SPS+F FHCN        T +S  ++   S
Sbjct: 1   MLLKSSSTPLLGSLLPPDHHHHHNDLVGKHSPSTFPFHCNNKPLSFSTTTASLNSSPSFS 60

Query: 61  DHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVEDSSFDSFISKPNHLRRSPLQ 120
           DHHR  A   FRRTNSEGNLNT+SHA         P S +  +F S       L+RS LQ
Sbjct: 61  DHHRAPAPSGFRRTNSEGNLNTISHASNVIDVHEDPFSSDSVNFKSSNKFSRGLKRSILQ 120

Query: 121 SIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAW 180
           +IPSFSFYGSR  T E+EEEE+D + D +E+ED+ G F    G+ +A++TPEVRAMEQAW
Sbjct: 121 TIPSFSFYGSRVRTEEDEEEEEDREIDTEEEEDDLGNF----GINAAVITPEVRAMEQAW 180

Query: 181 TRVASG-----------NEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGG 196
           +RV +G            EMYLARG+GIG    G G  GGG R  S G GGGGG
Sbjct: 181 SRVGAGGDGMGFGGDLRKEMYLARGLGIG---GGPGDGGGGGRLHSGGGGGGGG 227

[Close]

BLAST of Sed0022884 vs. NCBI nr
Match: KGN46380.2 (hypothetical protein Csa_005429 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 6.4e-35
Identity = 112/208 (53.85%), Postives = 134/208 (64.42%), Query Frame = 0


Query: 1   MLLRSSSTPLLGSLLPPDP-----VGKPSPSSFTFHCN--------TVSSPAAASLHSDH 60
           MLL+SSSTPLLGSLLPPD       GK SPS+F FHCN        T +S +++   SDH
Sbjct: 1   MLLKSSSTPLLGSLLPPDHHHHDLHGKHSPSTFPFHCNNKPLSFSTTTASLSSSPAFSDH 60

Query: 61  HRPSA--AFRRTNSEGNLNTLSHAPDSV----EDSSFDSFISKPNH-----LRRSPLQSI 120
           HR +A   FRRTNSEGNLNT+SHA D +    +  SFDS   K +      L+RS LQ+I
Sbjct: 61  HRAAAPSGFRRTNSEGNLNTVSHASDVIDVHEDPFSFDSVNFKSSKKFCHGLKRSILQTI 120

Query: 121 PSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRV 173
           PSFSFYGSR   EEEEEE+D + D  E+ED  G F I    ++AI+TPEVRAMEQAW+RV
Sbjct: 121 PSFSFYGSRARTEEEEEEEDREIDGKEEEDGLGNFSI----DAAIVTPEVRAMEQAWSRV 180

[Close]

BLAST of Sed0022884 vs. NCBI nr
Match: XP_008459965.1 (PREDICTED: uncharacterized protein LOC103498923 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-34
Identity = 123/238 (51.68%), Postives = 148/238 (62.18%), Query Frame = 0


Query: 1   MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHS 60
           MLL+SSSTPLLGSLLPPD        VGK SPS+F FHCN        T +S  ++   S
Sbjct: 1   MLLKSSSTPLLGSLLPPDHHHHHNDLVGKHSPSTFPFHCNNKPLSFSTTTASLNSSPSFS 60

Query: 61  DHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVEDSSFDSFISKPNHLRRSPLQ 120
           DHHR  A   FRRTNSEGNLNT+SHA         P S +  +F S       L+RS LQ
Sbjct: 61  DHHRAPAPSGFRRTNSEGNLNTISHASNVIDVHEDPFSSDSVNFKSSNKFSRGLKRSVLQ 120

Query: 121 SIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAW 180
           +IPSFSFYGSR  T E+EEEE+D + D +E+ED+ G F    G+ +A++TPEVRAMEQAW
Sbjct: 121 TIPSFSFYGSRVRTEEDEEEEEDREIDTEEEEDDLGNF----GINAAVITPEVRAMEQAW 180

Query: 181 TRVASG-----------NEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ 200
           +RV +G            EMYLARG+GIG G  G GG GG    G    GGGGGGG++
Sbjct: 181 SRVGAGGDGIGFVGDLRKEMYLARGLGIGGG-PGDGGGGGRLHTG----GGGGGGGEE 229

[Close]

BLAST of Sed0022884 vs. NCBI nr
Match: XP_038874351.1 (uncharacterized protein LOC120067050 isoform X2 [Benincasa hispida])

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-31
Identity = 115/222 (51.80%), Postives = 136/222 (61.26%), Query Frame = 0


Query: 1   MLLRSSSTPLLGSLLPPD--------PVGKPSPSSFTFHCN--TVSSPAAASLHS--DHH 60
           MLL+SSSTPLL SLLPPD            PSP  F FHCN  T+S    ASL+S     
Sbjct: 1   MLLKSSSTPLLSSLLPPDHHHDTVRKHSSSPSPPPFAFHCNNKTLSFSTIASLNSSPSFS 60

Query: 61  RPSAAFRRTNSEGNLNTLSHAPDSV----EDSSFDSFISKPNH---LRRSPLQSIPSFSF 120
                FRRT+SEGNLNTLSHAPD +    +  SFDSF  KP++   L+RS LQ+IPSFSF
Sbjct: 61  ATPTGFRRTHSEGNLNTLSHAPDVIDVHEDPFSFDSFNFKPSNSHSLKRSLLQTIPSFSF 120

Query: 121 YGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGM--ESAILTPEVRAMEQAWTRVA-- 180
           Y SR   EE++++DD   D +EDED  G F I+N M  ++AI+TPEV+AME AWT     
Sbjct: 121 YTSRARTEEDDDDDDQHTDPEEDEDGLGSFGIQNRMVTDAAIVTPEVKAMEHAWTDGIGF 180

Query: 181 ---SGNEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGG 196
              S  EMYL   +GIG    G G  GGG R  S G GGGGG
Sbjct: 181 VGDSQKEMYLTSELGIG----GQGDGGGGGRRWSGGGGGGGG 218

[Close]

BLAST of Sed0022884 vs. ExPASy TrEMBL
Match: A0A0A0KA70 (TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G088010 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-36
Identity = 125/235 (53.19%), Postives = 149/235 (63.40%), Query Frame = 0


Query: 1   MLLRSSSTPLLGSLLPPDP-----VGKPSPSSFTFHCN--------TVSSPAAASLHSDH 60
           MLL+SSSTPLLGSLLPPD       GK SPS+F FHCN        T +S +++   SDH
Sbjct: 1   MLLKSSSTPLLGSLLPPDHHHHDLHGKHSPSTFPFHCNNKPLSFSTTTASLSSSPAFSDH 60

Query: 61  HRPSA--AFRRTNSEGNLNTLSHAPDSV----EDSSFDSFISKPNH-----LRRSPLQSI 120
           HR +A   FRRTNSEGNLNT+SHA D +    +  SFDS   K +      L+RS LQ+I
Sbjct: 61  HRAAAPSGFRRTNSEGNLNTVSHASDVIDVHEDPFSFDSVNFKSSKKFCHGLKRSILQTI 120

Query: 121 PSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAWTRV 180
           PSFSFYGSR   EEEEEE+D + D  E+ED  G F I    ++AI+TPEVRAMEQAW+RV
Sbjct: 121 PSFSFYGSRARTEEEEEEEDREIDGKEEEDGLGNFSI----DAAIVTPEVRAMEQAWSRV 180

Query: 181 ASG-----------NEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ 200
            +G            EMYLARG+GIG    G G  GGG R    G GGGGGGG++
Sbjct: 181 GAGGDGMGFVGDLRKEMYLARGLGIG---GGPGDGGGGGR--LQGGGGGGGGGEE 226

[Close]

BLAST of Sed0022884 vs. ExPASy TrEMBL
Match: A0A5A7TE10 (TPR_11 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001580 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-35
Identity = 122/234 (52.14%), Postives = 145/234 (61.97%), Query Frame = 0


Query: 1   MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHS 60
           MLL+SSSTPLLGSLLPPD        VGK SPS+F FHCN        T +S  ++   S
Sbjct: 1   MLLKSSSTPLLGSLLPPDHHHHHNDLVGKHSPSTFPFHCNNKPLSFSTTTASLNSSPSFS 60

Query: 61  DHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVEDSSFDSFISKPNHLRRSPLQ 120
           DHHR  A   FRRTNSEGNLNT+SHA         P S +  +F S       L+RS LQ
Sbjct: 61  DHHRAPAPSGFRRTNSEGNLNTISHASNVIDVHEDPFSSDSVNFKSSNKFSRGLKRSILQ 120

Query: 121 SIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAW 180
           +IPSFSFYGSR  T E+EEEE+D + D +E+ED+ G F    G+ +A++TPEVRAMEQAW
Sbjct: 121 TIPSFSFYGSRVRTEEDEEEEEDREIDTEEEEDDLGNF----GINAAVITPEVRAMEQAW 180

Query: 181 TRVASG-----------NEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGG 196
           +RV +G            EMYLARG+GIG    G G  GGG R  S G GGGGG
Sbjct: 181 SRVGAGGDGMGFGGDLRKEMYLARGLGIG---GGPGDGGGGGRLHSGGGGGGGG 227

[Close]

BLAST of Sed0022884 vs. ExPASy TrEMBL
Match: A0A1S3CCM7 (uncharacterized protein LOC103498923 OS=Cucumis melo OX=3656 GN=LOC103498923 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.3e-35
Identity = 123/238 (51.68%), Postives = 148/238 (62.18%), Query Frame = 0


Query: 1   MLLRSSSTPLLGSLLPPDP-------VGKPSPSSFTFHCN--------TVSSPAAASLHS 60
           MLL+SSSTPLLGSLLPPD        VGK SPS+F FHCN        T +S  ++   S
Sbjct: 1   MLLKSSSTPLLGSLLPPDHHHHHNDLVGKHSPSTFPFHCNNKPLSFSTTTASLNSSPSFS 60

Query: 61  DHHRPSA--AFRRTNSEGNLNTLSHA---------PDSVEDSSFDSFISKPNHLRRSPLQ 120
           DHHR  A   FRRTNSEGNLNT+SHA         P S +  +F S       L+RS LQ
Sbjct: 61  DHHRAPAPSGFRRTNSEGNLNTISHASNVIDVHEDPFSSDSVNFKSSNKFSRGLKRSVLQ 120

Query: 121 SIPSFSFYGSR-GTVEEEEEEDDHDHDEDEDEDE-GCFHIKNGMESAILTPEVRAMEQAW 180
           +IPSFSFYGSR  T E+EEEE+D + D +E+ED+ G F    G+ +A++TPEVRAMEQAW
Sbjct: 121 TIPSFSFYGSRVRTEEDEEEEEDREIDTEEEEDDLGNF----GINAAVITPEVRAMEQAW 180

Query: 181 TRVASG-----------NEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSGGGGGGGDQ 200
           +RV +G            EMYLARG+GIG G  G GG GG    G    GGGGGGG++
Sbjct: 181 SRVGAGGDGIGFVGDLRKEMYLARGLGIGGG-PGDGGGGGRLHTG----GGGGGGGEE 229

[Close]

BLAST of Sed0022884 vs. ExPASy TrEMBL
Match: A0A2N9IKE4 (TPR_REGION domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52385 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 89/236 (37.71%), Postives = 122/236 (51.69%), Query Frame = 0


Query: 1   MLLRSSSTPLLGSLLPPDPVGKPSPSSFTFHCNTVSSPAAASLHSDHHR----------- 60
           MLLRSSSTP+LGSLLP      P+ +   +  NT+      ++H +H+R           
Sbjct: 1   MLLRSSSTPVLGSLLPSFS-DSPNNNCNHYETNTIIKHPPTTIHQNHNRHSFHQTGSLNY 60

Query: 61  ----PSAA-------FRRTNSEGNLNTLSHAPDSVEDSSFDSFISKPNHLRRSP----LQ 120
               PS A       FRR  SEGNL  L++A     +SS D +I KP+     P    LQ
Sbjct: 61  HSISPSIADLNRNKGFRRAQSEGNLEGLAYASC---NSSEDQYI-KPSKFSGRPKSIMLQ 120

Query: 121 SIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE---------GCFHIKNGMESAILTPEV 180
           +IPSFSFY  +G +E+ EEE++ D ++D++  E             ++N M + ILT EV
Sbjct: 121 TIPSFSFYNLKGELEDGEEEEESDIEDDKERVEVERVMAMGAQIQSLENKMNNMILTEEV 180

Query: 181 RAMEQAWTRVASGNEMYLARGIGIGTGLAGAGGSGGGRRPGSSG---SGGGGGGGD 199
              +  W  +    E +LARG+GIG+G    GGSGGG   GS G   S G GG G+
Sbjct: 181 NVKDDIW-NMGFDQETFLARGLGIGSG--DGGGSGGGGGCGSGGEFNSAGSGGDGE 228

[Close]

BLAST of Sed0022884 vs. ExPASy TrEMBL
Match: A0A7N2MKH3 (TPR_REGION domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.3e-12
Identity = 88/247 (35.63%), Postives = 120/247 (48.58%), Query Frame = 0


Query: 1   MLLRSSSTPLLGSLL------------------------PPDPVGKPSPSSFTFHCNTVS 60
           MLLRSSSTP+LGSLL                        PP  + +   + F+ H     
Sbjct: 1   MLLRSSSTPVLGSLLPSFSDSPNHNNCNHYETNNIIIKHPPPTIPQNHNNRFSLHQTGPL 60

Query: 61  SPAAASLHSDHHRPSAA-------FRRTNSEGNLNTLSHAPDSV-EDSSFDSFISKPNHL 120
           + +  S +S    PS A       FRR  S+GNL  L++A  S  ED   ++ + K    
Sbjct: 61  NLSPFSCNSSPISPSIADLDRNKGFRRAQSDGNLEGLAYASCSTNEDQYIETNLPKKFSA 120

Query: 121 RR--SPLQSIPSFSFYGSRGTVEEEEEEDDHDHDEDEDEDE---------GCFHIKNGME 180
           R   + LQ+I SFSFY S+G  E+EE+E++ D ++D++E+              ++N M 
Sbjct: 121 RPKCTMLQTIQSFSFYNSKGEYEDEEDEEESDREDDDEEEREERVMAMRAQTLSLENKMN 180

Query: 181 SAILTPEVRAMEQAWT------RVASGNEMYLARGIGIGTGLAGAGGSGGGRRPGSSGSG 199
           S ILT EV   +Q W       +   G  M+LARGIGIG    GA G GGG   G+ G G
Sbjct: 181 SMILTEEVNVKDQIWNMGIGDEKELLGQGMFLARGIGIG----GASGGGGG---GNGGRG 240

The following BLAST results are available for this feature:

BLAST of Sed0022884 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140576.2	3.4e-36	53.19	uncharacterized protein LOC101206684 [Cucumis sativus]	[more]
KAA0039891.1	4.9e-35	52.14	TPR_11 domain-containing protein [Cucumis melo var. makuwa] >TYK24611.1 Tetratri...	[more]
KGN46380.2	6.4e-35	53.85	hypothetical protein Csa_005429 [Cucumis sativus]	[more]
XP_008459965.1	1.1e-34	51.68	PREDICTED: uncharacterized protein LOC103498923 [Cucumis melo]	[more]
XP_038874351.1	1.9e-31	51.80	uncharacterized protein LOC120067050 isoform X2 [Benincasa hispida]	[more]

BLAST of Sed0022884 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0022884 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA70	1.7e-36	53.19	TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G088010 ...	[more]
A0A5A7TE10	2.4e-35	52.14	TPR_11 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CCM7	5.3e-35	51.68	uncharacterized protein LOC103498923 OS=Cucumis melo OX=3656 GN=LOC103498923 PE=...	[more]
A0A2N9IKE4	1.3e-12	37.71	TPR_REGION domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS523...	[more]
A0A7N2MKH3	6.3e-12	35.63	TPR_REGION domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Sed0022884 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..102
None	No IPR available	PANTHER	PTHR26312:SF78	OSJNBA0004N05.2 PROTEIN	coord: 1..193
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 1..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022884.1	Sed0022884.1	mRNA
Sed0022884.2	Sed0022884.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071840	cellular component organization or biogenesis
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0071554	cell wall organization or biogenesis
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016759	cellulose synthase activity