Sed0022846 (gene) Chayote v1

Overview


Name	Sed0022846
Type	gene
Organism	Sechium edule (Chayote v1)
Description	GATA transcription factor
Location	LG04: 32293720 .. 32294854 (-)
RNA-Seq Expression	Sed0022846
Synteny	Sed0022846

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGCCTAAAAGCGGCTGCTAAACCGTAAACTTCTGTCGGTTCGATTCTTCACATCTTCATCTTCTTCCTCTCGTTCTTCGTGCCACTGATCGCTCTCCAACTCCCTTCATGTCGGTTTCGTCTTTTTCGTCTTCCAAATTTCCATAACCTCAATTTTCCACTGTTCTAGTCGCGTTTGTTCATCACATTTCTGTTCCAGTTTTGATCATCCAGTGTTTTTGTTCATCCGATCTTCCGTTCGAGCCTGAGCGGTGCCGTTTCTCCGTCATTTTTCCTCGATTTTATGTCTTCGATTCGTCTCTTCCTCTCTCAATTTCCGTTTCCGCTTTCCGATTCGAGTTTCGGTGCTGATTTCCTCGATTATTCGTCTCAGATCTCTGAGATTTCCTTTGGAAAATGATGGATCCGATTGCGAAGGTGAGTGATCGCGATTCGCAAACCTGATTTATTGATTCCGAAATGTAAGAGTGCTGAATCGGTTGTGTGAATGCAGGCATCCGGAAAATCATCGTCGTCGGCGGCGGAGAGTGAGCAGAGCAGAAAGGCGTGCGCCGATTGCGGCACGACGAGGACTCCTCTCTGGCGCGGAGGTCCGGCTGGCCCTAAGGTGATTTCGTGGATCGAATATTATTCCGATGCTCGATTGTAGCGATTAGAGATTTTGATTATTGATTATTGATTTTTTTTTTTGTGTGTTGAGTCTCTTTGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGATCGGTTGTAGTAGAGAGGAGAAGCAAGGGAGGAAGTAGCAGCAACAATGGCGGCGGAAACGAAGGGAAAATGGGAGAGAAGAGGTTGAAATGGCGATTCATGGCGATTGGCAGAGGAGAGTTGAAGCAGAAGAGAAAGATGGAAGGAGAAGAAGAAGAAGAAGAAGCTGCAGTTTTATTAATGGCTCTTTCTTATGGATCTGTTGTATATGCTTGAAATGCTAACTCTAATGGAAAGCTGCATTTTCTTCTTCAATGGATTCACATCTATCTCTCTTCTTCTCTAATTTTTTTACAATGACTCTTATTTATTTATTTTCTCTTTTACATAGTGGTTGTGGTACCATTAAATACATATGGAATCCATTCATTTTGTATGTATATTTGATC

mRNA sequence

CGAGCCTAAAAGCGGCTGCTAAACCGTAAACTTCTGTCGGTTCGATTCTTCACATCTTCATCTTCTTCCTCTCGTTCTTCGTGCCACTGATCGCTCTCCAACTCCCTTCATGTCGGTTTCGTCTTTTTCGTCTTCCAAATTTCCATAACCTCAATTTTCCACTGTTCTAGTCGCGTTTGTTCATCACATTTCTGTTCCAGTTTTGATCATCCAGTGTTTTTGTTCATCCGATCTTCCGTTCGAGCCTGAGCGGTGCCGTTTCTCCGTCATTTTTCCTCGATTTTATGTCTTCGATTCGTCTCTTCCTCTCTCAATTTCCGTTTCCGCTTTCCGATTCGAGTTTCGGTGCTGATTTCCTCGATTATTCGTCTCAGATCTCTGAGATTTCCTTTGGAAAATGATGGATCCGATTGCGAAGGCATCCGGAAAATCATCGTCGTCGGCGGCGGAGAGTGAGCAGAGCAGAAAGGCGTGCGCCGATTGCGGCACGACGAGGACTCCTCTCTGGCGCGGAGGTCCGGCTGGCCCTAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGATCGGTTGTAGTAGAGAGGAGAAGCAAGGGAGGAAGTAGCAGCAACAATGGCGGCGGAAACGAAGGGAAAATGGGAGAGAAGAGGTTGAAATGGCGATTCATGGCGATTGGCAGAGGAGAGTTGAAGCAGAAGAGAAAGATGGAAGGAGAAGAAGAAGAAGAAGAAGCTGCAGTTTTATTAATGGCTCTTTCTTATGGATCTGTTGTATATGCTTGAAATGCTAACTCTAATGGAAAGCTGCATTTTCTTCTTCAATGGATTCACATCTATCTCTCTTCTTCTCTAATTTTTTTACAATGACTCTTATTTATTTATTTTCTCTTTTACATAGTGGTTGTGGTACCATTAAATACATATGGAATCCATTCATTTTGTATGTATATTTGATC

Coding sequence (CDS)

ATGATGGATCCGATTGCGAAGGCATCCGGAAAATCATCGTCGTCGGCGGCGGAGAGTGAGCAGAGCAGAAAGGCGTGCGCCGATTGCGGCACGACGAGGACTCCTCTCTGGCGCGGAGGTCCGGCTGGCCCTAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGCAGGAAGAAGAGAAGATCGGTTGTAGTAGAGAGGAGAAGCAAGGGAGGAAGTAGCAGCAACAATGGCGGCGGAAACGAAGGGAAAATGGGAGAGAAGAGGTTGAAATGGCGATTCATGGCGATTGGCAGAGGAGAGTTGAAGCAGAAGAGAAAGATGGAAGGAGAAGAAGAAGAAGAAGAAGCTGCAGTTTTATTAATGGCTCTTTCTTATGGATCTGTTGTATATGCTTGA

Protein sequence

MMDPIAKASGKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKKRRSVVVERRSKGGSSSNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKMEGEEEEEEAAVLLMALSYGSVVYA

Homology

[Close]

BLAST of Sed0022846 vs. NCBI nr
Match: XP_038875288.1 (GATA transcription factor 16-like [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 9.1e-36
Identity = 93/139 (66.91%), Postives = 108/139 (77.70%), Query Frame = 0


Query: 1   MMDPIAKAS---GKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPI + S       SS AESEQ++K CADCGTT+TPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSVV-------VERRSKGGSS-SNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKMEG 120
           KRRS++       VER+SKG S+ SNNGGGN+ K+G + LKWR MA GR EL Q+R++  
Sbjct: 61  KRRSLLGLNRGGEVERKSKGSSNRSNNGGGNQTKIGRESLKWRSMAFGRNELMQRRQL-- 120

Query: 121 EEEEEEAAVLLMALSYGSV 129
             EEE+AAVLLMALSYGSV
Sbjct: 121 -GEEEQAAVLLMALSYGSV 136

[Close]

BLAST of Sed0022846 vs. NCBI nr
Match: XP_004150081.1 (GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein Csa_022928 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-34
Identity = 90/140 (64.29%), Postives = 108/140 (77.14%), Query Frame = 0


Query: 1   MMDPIAKAS---GKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPI + S       +S  ESEQ++K CADCGTT+TPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSVV-------VERRSKGGSS--SNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKME 120
           KRRS++       VER++KG S+  +NNGGGN+GK+G + LKWR MA GR EL Q+R++ 
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQL- 120

Query: 121 GEEEEEEAAVLLMALSYGSV 129
              EEE+AAVLLMALSYGSV
Sbjct: 121 --GEEEQAAVLLMALSYGSV 137

[Close]

BLAST of Sed0022846 vs. NCBI nr
Match: XP_022138518.1 (GATA transcription factor 16-like [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 2.9e-34
Identity = 92/143 (64.34%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 1   MMDPIAKAS-----GKS--SSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGI 60
           MMDPI + S     G+S   +S AESEQ+RK CADCGTT+TPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAGRSPRKASPAESEQNRKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSVV-------VERRSKGGSS-SNNGGGNEGKMGEKRLKWRFMAIGRGELKQKR 120
           RSRKKRRS++       VER++KG S+ ++NGGGN+ K+G   LKWR MA GR EL Q+R
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKNKGSSNRTSNGGGNQAKIGGDNLKWRLMAFGREELMQRR 120

Query: 121 KMEGEEEEEEAAVLLMALSYGSV 129
           ++    EEE+AAVLLMALSYGSV
Sbjct: 121 QL---GEEEQAAVLLMALSYGSV 140

[Close]

BLAST of Sed0022846 vs. NCBI nr
Match: XP_008458384.1 (PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936.1 GATA transcription factor 16-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 8.5e-34
Identity = 89/140 (63.57%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 1   MMDPIAKAS---GKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPI + S       +S  ESEQ++K CADCGTT+TPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSVV-------VERRSKGGSS--SNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKME 120
           KRRS++       VER++KG S+  +NNGGGN+GK+G + LKWR MA GR EL Q+ ++ 
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQL- 120

Query: 121 GEEEEEEAAVLLMALSYGSV 129
              EEE+AAVLLMALSYGSV
Sbjct: 121 --GEEEQAAVLLMALSYGSV 137

[Close]

BLAST of Sed0022846 vs. NCBI nr
Match: XP_023548663.1 (GATA transcription factor 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-33
Identity = 90/143 (62.94%), Postives = 105/143 (73.43%), Query Frame = 0


Query: 1   MMDPIAKAS-------GKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGI 60
           MMDPI + S           SS AESEQ++K CADCGTT+TPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAENSPRMSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSVV-------VERRSKGGSSSN-NGGGNEGKMGEKRLKWRFMAIGRGELKQKR 120
           RSRKKRRS++       VER+SKG S+ N NGGGN+ K+G   LKWR  A GR +L Q+R
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKSKGSSNRNSNGGGNQAKLGGDNLKWRSTAFGRKDLMQRR 120

Query: 121 KMEGEEEEEEAAVLLMALSYGSV 129
           ++    EEE+AAVLLMALSYGSV
Sbjct: 121 QL---GEEEQAAVLLMALSYGSV 140

[Close]

BLAST of Sed0022846 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 3.2e-23
Identity = 69/135 (51.11%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 2   MDPIAKASGKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKKRRS 61
           +D I + S  SS+ A  +E  +K+CA CGT++TPLWRGGPAGPKSLCNACGIR+RKKRR+
Sbjct: 21  VDAIEEHSSSSSNEAISNE--KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRT 80

Query: 62  VVVERRSKGGSSSNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKMEGEE-----EEEEA 121
           ++  R       S+N      K G+  LK R M +GR  + Q+   E +      EEE+A
Sbjct: 81  LISNRSEDKKKKSHN---RNPKFGDS-LKQRLMELGREVMMQRSTAENQRRNKLGEEEQA 140

Query: 122 AVLLMALSYGSVVYA 132
           AVLLMALSY S VYA
Sbjct: 141 AVLLMALSYASSVYA 149

[Close]

BLAST of Sed0022846 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.6e-22
Identity = 65/109 (59.63%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 23  RKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKKRRSVVVERRSKGGSSSNNGGGNEG 82
           +K CADCGT++TPLWRGGP GPKSLCNACGIR+RKKRR    + +    SSS  GGGN  
Sbjct: 35  KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRGGTEDNKKLKKSSS--GGGNR- 94

Query: 83  KMGEKRLKWRFMAIG---RGELKQKRKMEGEEEEEEAAVLLMALSYGSV 129
           K GE  LK   M +G   R  ++++R+  G  EEE+AAVLLMALSYGSV
Sbjct: 95  KFGES-LKQSLMDLGIRKRSTVEKQRQKLG--EEEQAAVLLMALSYGSV 137

[Close]

BLAST of Sed0022846 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.0e-14
Identity = 60/162 (37.04%), Postives = 77/162 (47.53%), Query Frame = 0


Query: 9   SGKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKKRRSVV---VE 68
           S   S   + S  +++ C DCGT RTPLWRGGPAGPKSLCNACGI+SRKKR++ +    E
Sbjct: 27  SSSGSGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSE 86

Query: 69  RRSKGGSSSNNGGGNEGKMGEKRLK--------------------------------WRF 128
            + K   S+ N   N      K+ K                                 +F
Sbjct: 87  EKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKF 146

[Close]

BLAST of Sed0022846 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 7.3e-12
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 2   MDPIAKASGKSSSSAAESEQSR---KACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKK 61
           MDP    S  SS  +   ++ +   + C++C TT+TP+WRGGP GPKSLCNACGIR RK+
Sbjct: 1   MDPRKLLSCSSSYVSVRMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQ 60

Query: 62  RRSVVVERRSKGGSSSNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKMEGEEEEEEAAV 121
           RRS ++         S         +  K++     + G   +K++R +   +EEE+AA+
Sbjct: 61  RRSELLGIHIIRSHKS---------LASKKINLLSSSHGGVAVKKRRSL---KEEEQAAL 119

Query: 122 LLMALSYGSVV 130
            L+ LS  SV+
Sbjct: 121 CLLLLSCSSVL 119

[Close]

BLAST of Sed0022846 vs. ExPASy Swiss-Prot
Match: Q9SZI6 (Putative GATA transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=GATA22 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-11
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 24  KACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKKRRSVV 64
           + C+DC TT+TPLWR GP GPKSLCNACGIR RK RR+ +
Sbjct: 199 RICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAM 238

[Close]

BLAST of Sed0022846 vs. ExPASy TrEMBL
Match: A0A0A0KG76 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.3e-35
Identity = 90/140 (64.29%), Postives = 108/140 (77.14%), Query Frame = 0


Query: 1   MMDPIAKAS---GKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPI + S       +S  ESEQ++K CADCGTT+TPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSVV-------VERRSKGGSS--SNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKME 120
           KRRS++       VER++KG S+  +NNGGGN+GK+G + LKWR MA GR EL Q+R++ 
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQL- 120

Query: 121 GEEEEEEAAVLLMALSYGSV 129
              EEE+AAVLLMALSYGSV
Sbjct: 121 --GEEEQAAVLLMALSYGSV 137

[Close]

BLAST of Sed0022846 vs. ExPASy TrEMBL
Match: A0A6J1CD73 (GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 92/143 (64.34%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 1   MMDPIAKAS-----GKS--SSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGI 60
           MMDPI + S     G+S   +S AESEQ+RK CADCGTT+TPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAGRSPRKASPAESEQNRKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSVV-------VERRSKGGSS-SNNGGGNEGKMGEKRLKWRFMAIGRGELKQKR 120
           RSRKKRRS++       VER++KG S+ ++NGGGN+ K+G   LKWR MA GR EL Q+R
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKNKGSSNRTSNGGGNQAKIGGDNLKWRLMAFGREELMQRR 120

Query: 121 KMEGEEEEEEAAVLLMALSYGSV 129
           ++    EEE+AAVLLMALSYGSV
Sbjct: 121 QL---GEEEQAAVLLMALSYGSV 140

[Close]

BLAST of Sed0022846 vs. ExPASy TrEMBL
Match: A0A5D3BXI1 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00160 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.1e-34
Identity = 89/140 (63.57%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 1   MMDPIAKAS---GKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPI + S       +S  ESEQ++K CADCGTT+TPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSVV-------VERRSKGGSS--SNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKME 120
           KRRS++       VER++KG S+  +NNGGGN+GK+G + LKWR MA GR EL Q+ ++ 
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQL- 120

Query: 121 GEEEEEEAAVLLMALSYGSV 129
              EEE+AAVLLMALSYGSV
Sbjct: 121 --GEEEQAAVLLMALSYGSV 137

[Close]

BLAST of Sed0022846 vs. ExPASy TrEMBL
Match: A0A1S3C8C2 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497809 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.1e-34
Identity = 89/140 (63.57%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 1   MMDPIAKAS---GKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPI + S       +S  ESEQ++K CADCGTT+TPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSVV-------VERRSKGGSS--SNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKME 120
           KRRS++       VER++KG S+  +NNGGGN+GK+G + LKWR MA GR EL Q+ ++ 
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQL- 120

Query: 121 GEEEEEEAAVLLMALSYGSV 129
              EEE+AAVLLMALSYGSV
Sbjct: 121 --GEEEQAAVLLMALSYGSV 137

[Close]

BLAST of Sed0022846 vs. ExPASy TrEMBL
Match: A0A1S3C902 (GATA transcription factor 16-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497809 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.6e-33
Identity = 82/120 (68.33%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 18  ESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKKRRSVV-------VERRSKG 77
           ESEQ++K CADCGTT+TPLWRGGPAGPKSLCNACGIRSRKKRRS++       VER++KG
Sbjct: 2   ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKG 61

Query: 78  GSS--SNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKMEGEEEEEEAAVLLMALSYGSV 129
            S+  +NNGGGN+GK+G + LKWR MA GR EL Q+ ++    EEE+AAVLLMALSYGSV
Sbjct: 62  SSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQL---GEEEQAAVLLMALSYGSV 118

[Close]

BLAST of Sed0022846 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-24
Identity = 69/135 (51.11%), Postives = 88/135 (65.19%), Query Frame = 0


Query: 2   MDPIAKASGKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKKRRS 61
           +D I + S  SS+ A  +E  +K+CA CGT++TPLWRGGPAGPKSLCNACGIR+RKKRR+
Sbjct: 21  VDAIEEHSSSSSNEAISNE--KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRT 80

Query: 62  VVVERRSKGGSSSNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKMEGEE-----EEEEA 121
           ++  R       S+N      K G+  LK R M +GR  + Q+   E +      EEE+A
Sbjct: 81  LISNRSEDKKKKSHN---RNPKFGDS-LKQRLMELGREVMMQRSTAENQRRNKLGEEEQA 140

Query: 122 AVLLMALSYGSVVYA 132
           AVLLMALSY S VYA
Sbjct: 141 AVLLMALSYASSVYA 149

[Close]

BLAST of Sed0022846 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 105.5 bits (262), Expect = 3.2e-23
Identity = 65/109 (59.63%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 23  RKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKKRRSVVVERRSKGGSSSNNGGGNEG 82
           +K CADCGT++TPLWRGGP GPKSLCNACGIR+RKKRR    + +    SSS  GGGN  
Sbjct: 35  KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRGGTEDNKKLKKSSS--GGGNR- 94

Query: 83  KMGEKRLKWRFMAIG---RGELKQKRKMEGEEEEEEAAVLLMALSYGSV 129
           K GE  LK   M +G   R  ++++R+  G  EEE+AAVLLMALSYGSV
Sbjct: 95  KFGES-LKQSLMDLGIRKRSTVEKQRQKLG--EEEQAAVLLMALSYGSV 137

[Close]

BLAST of Sed0022846 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 )

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-15
Identity = 60/162 (37.04%), Postives = 77/162 (47.53%), Query Frame = 0


Query: 9   SGKSSSSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKKRRSVV---VE 68
           S   S   + S  +++ C DCGT RTPLWRGGPAGPKSLCNACGI+SRKKR++ +    E
Sbjct: 27  SSSGSGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSE 86

Query: 69  RRSKGGSSSNNGGGNEGKMGEKRLK--------------------------------WRF 128
            + K   S+ N   N      K+ K                                 +F
Sbjct: 87  EKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKF 146

[Close]

BLAST of Sed0022846 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-15
Identity = 59/171 (34.50%), Postives = 78/171 (45.61%), Query Frame = 0


Query: 14  SSAAESEQSRKACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKKRRSVV---------- 73
           SS+     ++K C DCGT+RTPLWRGGPAGPKSLCNACGI+SRKKR++ +          
Sbjct: 27  SSSGSGGDTKKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGIRQDDIKIK 86

Query: 74  -----------------------------------------------VERRSKGGSSSNN 127
                                                          ++R  +  SSSNN
Sbjct: 87  SKSNNNLGLESRNVKTGKGEPVNVKIAKCEPGIVKIAKGEPGNVKNKIKRDPENSSSSNN 146

[Close]

BLAST of Sed0022846 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-13
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 2   MDPIAKASGKSSSSAAESEQSR---KACADCGTTRTPLWRGGPAGPKSLCNACGIRSRKK 61
           MDP    S  SS  +   ++ +   + C++C TT+TP+WRGGP GPKSLCNACGIR RK+
Sbjct: 1   MDPRKLLSCSSSYVSVRMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQ 60

Query: 62  RRSVVVERRSKGGSSSNNGGGNEGKMGEKRLKWRFMAIGRGELKQKRKMEGEEEEEEAAV 121
           RRS ++         S         +  K++     + G   +K++R +   +EEE+AA+
Sbjct: 61  RRSELLGIHIIRSHKS---------LASKKINLLSSSHGGVAVKKRRSL---KEEEQAAL 119

Query: 122 LLMALSYGSVV 130
            L+ LS  SV+
Sbjct: 121 CLLLLSCSSVL 119

The following BLAST results are available for this feature:

BLAST of Sed0022846 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875288.1	9.1e-36	66.91	GATA transcription factor 16-like [Benincasa hispida]	[more]
XP_004150081.1	1.7e-34	64.29	GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein ...	[more]
XP_022138518.1	2.9e-34	64.34	GATA transcription factor 16-like [Momordica charantia]	[more]
XP_008458384.1	8.5e-34	63.57	PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936...	[more]
XP_023548663.1	2.5e-33	62.94	GATA transcription factor 16-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0022846 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LG10	3.2e-23	51.11	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9FJ10	4.6e-22	59.63	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q9LIB5	6.0e-14	37.04	GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1	[more]
Q8LC59	7.3e-12	37.40	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q9SZI6	4.7e-11	70.00	Putative GATA transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=GATA22 ...	[more]

BLAST of Sed0022846 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG76	8.3e-35	64.29	GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 P...	[more]
A0A6J1CD73	1.4e-34	64.34	GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666...	[more]
A0A5D3BXI1	4.1e-34	63.57	GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3C8C2	4.1e-34	63.57	GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A1S3C902	4.6e-33	68.33	GATA transcription factor 16-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

BLAST of Sed0022846 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06740.1	2.2e-24	51.11	GATA transcription factor 15	[more]
AT5G49300.1	3.2e-23	59.63	GATA transcription factor 16	[more]
AT3G16870.1	4.2e-15	37.04	GATA transcription factor 17	[more]
AT4G16141.1	5.5e-15	34.50	GATA type zinc finger transcription factor family protein	[more]
AT5G26930.1	5.2e-13	37.40	GATA transcription factor 23	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 20..71 e-value: 3.7E-15 score: 66.3
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 26..60 e-value: 2.2E-16 score: 59.2
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 26..51
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 20..56 score: 12.518645
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 25..60 e-value: 7.85143E-12 score: 54.301
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 20..115 e-value: 6.5E-16 score: 60.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..88
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 8..129
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 22..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022846.1	Sed0022846.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding