Sed0022797 (gene) Chayote v1

Overview


Name	Sed0022797
Type	gene
Organism	Sechium edule (Chayote v1)
Description	late embryogenesis abundant protein 6-like
Location	LG02: 51260518 .. 51261596 (+)
RNA-Seq Expression	Sed0022797
Synteny	Sed0022797

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGCTGTGAGGGATAAACTACATGATATCAGTGTCATGCGTAAAGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTAACCTCTCGATCATAACGTATGCCTTTTCGAGTTTGATTCTATTATTGATTAAATTTTTAAAGATTAAAAAGTCGTTTCGTAAAATTGTTGATTGACAAAACGAAAGTTTTATAAATGAAACTTTTGAATGTTATTAATCATCATAAAAATAAAAATAAAAATTAATTTTATCTCTCTTCTTTTCAATAACGGTCAAATATGACTGATGTTTGAAGTTCTCATATTAAAAAGTGAACGGAACCACCTTCTAATTTATAAATGAGGTTTGGGAGTCGAACTCTATTCTTCAAATTTATATCAAATTAACCTAAGACTATTAAGAATTAGTTAAATTGTGGCAGCTTATTGAATCATTTTCGCACATCTAATTTTTCATTCCTTAGAATCAAACAATAATACACCCTTACAATTAAACTCAATGAGCTCTTGCATTCACTCTTCAACTCGAAATTTCAAGAAAAAAATTTATTCCATTCTATTTGAGATATAAAATTAAGCTTATTTTCTTCCTATTTCTCTATAATAATTTTCATTTTTAAGCATTTGAATTTTGAAACTTTAGCCAAATTCTAAAAACTAAAAGAAATTTTCAAAATATTTTTTTTTTCCATCGACTAATTATAAGTGAGAATAACATAGTAACCTTAATTTTAAAATAAACATAAAATAATTATCAAACGAGATTTGAAATTCAGAGCATTGAAATGGGTGGTAATTGACAGGCTGAAAAGGAGCTAGCAAAGGCAAGAGTGGAAGTGGCTCATGAGGTAAGAATGGCAAGAGAAGCTGAAGCTGCCATGGATCTTCATGTGGCCAAAGCTGGAATGAAGGCTGAGAAAGAAATGGCTAAGTTTTCCGACCCTCCGTCCGGTTCCTTCGTGCCTCCCGGCGCCACTGCCGCCGCTCCCAATGTGGCTGTGCCTCCGAGCGCGACTATCATCAGAGCCCCTGGCGCCGACGACAAGGCGGAAGCTCCTCCCTCTAAGCACTTCATGTAA

mRNA sequence

ATGCAGGCTGTGAGGGATAAACTACATGATATCAGTGTCATGCGTAAAGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGCTGAAAAGGAGCTAGCAAAGGCAAGAGTGGAAGTGGCTCATGAGGTAAGAATGGCAAGAGAAGCTGAAGCTGCCATGGATCTTCATGTGGCCAAAGCTGGAATGAAGGCTGAGAAAGAAATGGCTAAGTTTTCCGACCCTCCGTCCGGTTCCTTCGTGCCTCCCGGCGCCACTGCCGCCGCTCCCAATGTGGCTGTGCCTCCGAGCGCGACTATCATCAGAGCCCCTGGCGCCGACGACAAGGCGGAAGCTCCTCCCTCTAAGCACTTCATGTAA

Coding sequence (CDS)

ATGCAGGCTGTGAGGGATAAACTACATGATATCAGTGTCATGCGTAAAGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGCTGAAAAGGAGCTAGCAAAGGCAAGAGTGGAAGTGGCTCATGAGGTAAGAATGGCAAGAGAAGCTGAAGCTGCCATGGATCTTCATGTGGCCAAAGCTGGAATGAAGGCTGAGAAAGAAATGGCTAAGTTTTCCGACCCTCCGTCCGGTTCCTTCGTGCCTCCCGGCGCCACTGCCGCCGCTCCCAATGTGGCTGTGCCTCCGAGCGCGACTATCATCAGAGCCCCTGGCGCCGACGACAAGGCGGAAGCTCCTCCCTCTAAGCACTTCATGTAA

Protein sequence

MQAVRDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRMAREAEAAMDLHVAKAGMKAEKEMAKFSDPPSGSFVPPGATAAAPNVAVPPSATIIRAPGADDKAEAPPSKHFM

Homology

[Close]

BLAST of Sed0022797 vs. NCBI nr
Match: XP_004134355.1 (late embryogenesis abundant protein 6 [Cucumis sativus] >KGN56644.1 hypothetical protein Csa_011484 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 2.3e-30
Identity = 84/113 (74.34%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MQAVRDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRMAREAEAAMDLHVAKAG 60
           MQAVR+KLHD+SVMRKAKAEAKAEEKAEKELAKARVEVAHEVR+AREAEAAMDLHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKFSDPPSGSFVPPGATAAAPNVAVP--PSATIIRAPGADDKAEAP 112
           MKAEKEMAK++D  + +FV PG T   P+ +VP  P  T++ APG  D A AP
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAP 113

[Close]

BLAST of Sed0022797 vs. NCBI nr
Match: XP_038878054.1 (late embryogenesis abundant protein 6-like [Benincasa hispida])

HSP 1 Score: 141.4 bits (355), Expect = 5.1e-30
Identity = 85/115 (73.91%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 1   MQAVRDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRMAREAEAAMDLHVAKAG 60
           MQAV+DKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVR+AREAEAAMDLHVAKAG
Sbjct: 1   MQAVKDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKFSDPPSGSFVPPGATAA---APNVAVPPSATIIRAPGADDKAEAPP 113
           MKAEKEM K+++  + +FV PG TAA     ++AV P  TI+ APG  + A APP
Sbjct: 61  MKAEKEMTKYANTHTHTFVAPGGTAALDCTADMAVAPGVTIVNAPGTVNMAGAPP 115

[Close]

BLAST of Sed0022797 vs. NCBI nr
Match: XP_008438228.1 (PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo] >KAA0049075.1 late embryogenesis abundant protein [Cucumis melo var. makuwa] >TYK17488.1 late embryogenesis abundant protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 8.7e-30
Identity = 84/115 (73.04%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MQAVRDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRMAREAEAAMDLHVAKAG 60
           MQAV++KLHD+SVMRKAKAEAKAEEKAEKELAKARVEVAHEVR+AREAEAAMDLHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKFSDPPSGSFVPPGATAAAP----NVAVPPSATIIRAPGADDKAEAP 112
           MKAEKEMAK++D  + +FV PG T   P    NV V P  T++ APG  D A AP
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAP 115

[Close]

BLAST of Sed0022797 vs. NCBI nr
Match: XP_022924652.1 (late embryogenesis abundant protein 6-like [Cucurbita moschata] >XP_022924653.1 late embryogenesis abundant protein 6-like [Cucurbita moschata] >KAG6582534.1 Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.4 bits (311), Expect = 6.5e-25
Identity = 76/108 (70.37%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 1   MQAVRDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRMAREAEAAMDLHVAKAG 60
           MQAVRDKLHDI+ MRKAK+EAKAEEKAEKELAKARVEVAHEVR+AREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKFSDPPSGSFVPPGATAAAPNVAVPPSATIIRAPGADDKA 109
            +AEKEMAK ++  +  FV PG      NVA  P  T++ APG  D A
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPG-DGTTTNVATAPGVTMVGAPGTVDMA 107

[Close]

BLAST of Sed0022797 vs. NCBI nr
Match: XP_022980446.1 (late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980447.1 late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980448.1 late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980449.1 late embryogenesis abundant protein 6-like [Cucurbita maxima])

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 75/106 (70.75%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MQAVRDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRMAREAEAAMDLHVAKAG 60
           MQAVRDKLHDI+ MRKAK+EAKAEEKAEKELAKARVEVAHEVR+AREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKFSDPPSGSFVPPGATAAAPNVAVPPSATIIRAPGADD 107
            +AEKEMAK ++  +  FV PG      NVA  P  T++ APG  D
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPG-DGTTTNVATAPGVTMVGAPGTVD 105

[Close]

BLAST of Sed0022797 vs. ExPASy Swiss-Prot
Match: Q39138 (Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-04
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MQAVRDKLHDISVMRKAK---AEAKAEEKAEKELA--KARVEVAHEVRMAREAEAAMDLH 60
          MQ+ + K+ D++   K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA MD+H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VAKAGMKAEKEMAKFSD---PPSGSFVPPGATAAAP 89
          +AKA    +K MAK S       G  VP  A   AP
Sbjct: 61 MAKAAHAEDKLMAKQSHYHVTDHGPHVPQQAPVPAP 96

[Close]

BLAST of Sed0022797 vs. ExPASy TrEMBL
Match: A0A0A0L6I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 84/113 (74.34%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MQAVRDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRMAREAEAAMDLHVAKAG 60
           MQAVR+KLHD+SVMRKAKAEAKAEEKAEKELAKARVEVAHEVR+AREAEAAMDLHVAKAG
Sbjct: 1   MQAVREKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKFSDPPSGSFVPPGATAAAPNVAVP--PSATIIRAPGADDKAEAP 112
           MKAEKEMAK++D  + +FV PG T   P+ +VP  P  T++ APG  D A AP
Sbjct: 61  MKAEKEMAKYADTHTNTFVSPGGTTTLPDYSVPVAPGMTMVGAPGTVDMAGAP 113

[Close]

BLAST of Sed0022797 vs. ExPASy TrEMBL
Match: A0A5A7U624 (Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003530 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.2e-30
Identity = 84/115 (73.04%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MQAVRDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRMAREAEAAMDLHVAKAG 60
           MQAV++KLHD+SVMRKAKAEAKAEEKAEKELAKARVEVAHEVR+AREAEAAMDLHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKFSDPPSGSFVPPGATAAAP----NVAVPPSATIIRAPGADDKAEAP 112
           MKAEKEMAK++D  + +FV PG T   P    NV V P  T++ APG  D A AP
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAP 115

[Close]

BLAST of Sed0022797 vs. ExPASy TrEMBL
Match: A0A1S3AWI7 (uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.2e-30
Identity = 84/115 (73.04%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MQAVRDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRMAREAEAAMDLHVAKAG 60
           MQAV++KLHD+SVMRKAKAEAKAEEKAEKELAKARVEVAHEVR+AREAEAAMDLHVAKAG
Sbjct: 1   MQAVKEKLHDMSVMRKAKAEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMDLHVAKAG 60

Query: 61  MKAEKEMAKFSDPPSGSFVPPGATAAAP----NVAVPPSATIIRAPGADDKAEAP 112
           MKAEKEMAK++D  + +FV PG T   P    NV V P  T++ APG  D A AP
Sbjct: 61  MKAEKEMAKYADTHTNTFVAPGGTVTPPDYSANVPVAPGMTMVGAPGTVDMAGAP 115

[Close]

BLAST of Sed0022797 vs. ExPASy TrEMBL
Match: A0A6J1ED39 (late embryogenesis abundant protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111432084 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.1e-25
Identity = 76/108 (70.37%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 1   MQAVRDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRMAREAEAAMDLHVAKAG 60
           MQAVRDKLHDI+ MRKAK+EAKAEEKAEKELAKARVEVAHEVR+AREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKFSDPPSGSFVPPGATAAAPNVAVPPSATIIRAPGADDKA 109
            +AEKEMAK ++  +  FV PG      NVA  P  T++ APG  D A
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPG-DGTTTNVATAPGVTMVGAPGTVDMA 107

[Close]

BLAST of Sed0022797 vs. ExPASy TrEMBL
Match: A0A6J1IRE5 (late embryogenesis abundant protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111479813 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.3e-25
Identity = 75/106 (70.75%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MQAVRDKLHDISVMRKAKAEAKAEEKAEKELAKARVEVAHEVRMAREAEAAMDLHVAKAG 60
           MQAVRDKLHDI+ MRKAK+EAKAEEKAEKELAKARVEVAHEVR+AREAEAAM LHVAKAG
Sbjct: 1   MQAVRDKLHDITAMRKAKSEAKAEEKAEKELAKARVEVAHEVRLAREAEAAMSLHVAKAG 60

Query: 61  MKAEKEMAKFSDPPSGSFVPPGATAAAPNVAVPPSATIIRAPGADD 107
            +AEKEMAK ++  +  FV PG      NVA  P  T++ APG  D
Sbjct: 61  KRAEKEMAKHANAHTNIFVAPG-DGTTTNVATAPGVTMVGAPGTVD 105

[Close]

BLAST of Sed0022797 vs. TAIR 10
Match: AT1G32560.1 (Late embryogenesis abundant protein, group 1 protein )

HSP 1 Score: 47.8 bits (112), Expect = 7.2e-06
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MQAVRDKLHDISVMRKAK---AEAKAEEKAEKELA--KARVEVAHEVRMAREAEAAMDLH 60
          MQ+ + K+ D++   K K    +AKA+EKAE+ +A  K   E+AH+ R A+EAEA MD+H
Sbjct: 1  MQSAKQKISDMASTAKEKMVICQAKADEKAERAMARTKEEKEIAHQRRKAKEAEANMDMH 60

Query: 61 VAKAGMKAEKEMAKFSD---PPSGSFVPPGATAAAP 89
          +AKA    +K MAK S       G  VP  A   AP
Sbjct: 61 MAKAAHAEDKLMAKQSHYHVTDHGPHVPQQAPVPAP 96

The following BLAST results are available for this feature:

BLAST of Sed0022797 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134355.1	2.3e-30	74.34	late embryogenesis abundant protein 6 [Cucumis sativus] >KGN56644.1 hypothetical...	[more]
XP_038878054.1	5.1e-30	73.91	late embryogenesis abundant protein 6-like [Benincasa hispida]	[more]
XP_008438228.1	8.7e-30	73.04	PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo] >KAA0049075.1 lat...	[more]
XP_022924652.1	6.5e-25	70.37	late embryogenesis abundant protein 6-like [Cucurbita moschata] >XP_022924653.1 ...	[more]
XP_022980446.1	1.1e-24	70.75	late embryogenesis abundant protein 6-like [Cucurbita maxima] >XP_022980447.1 la...	[more]

BLAST of Sed0022797 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39138	1.0e-04	42.71	Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE...	[more]

BLAST of Sed0022797 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6I7	1.1e-30	74.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127070 PE=3 SV=1	[more]
A0A5A7U624	4.2e-30	73.04	Late embryogenesis abundant protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3AWI7	4.2e-30	73.04	uncharacterized protein LOC103483397 OS=Cucumis melo OX=3656 GN=LOC103483397 PE=...	[more]
A0A6J1ED39	3.1e-25	70.37	late embryogenesis abundant protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IRE5	5.3e-25	70.75	late embryogenesis abundant protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Sed0022797 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32560.1	7.2e-06	42.71	Late embryogenesis abundant protein, group 1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..117
None	No IPR available	PANTHER	PTHR33493:SF3	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 1..84
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 1..66 e-value: 2.2E-13 score: 50.6
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATED	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022797.1	Sed0022797.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy