Sed0022792 (gene) Chayote v1

Overview


Name	Sed0022792
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA-binding protein 1-like
Location	LG13: 23216980 .. 23218716 (+)
RNA-Seq Expression	Sed0022792
Synteny	Sed0022792

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACACTGCCTTCGACATGGCGTCTGTCTCTTCTCTCTGTTTTTTCTGTTCATCTCTGTAATGTTTAACTTCTAAAAAGTAAGTTCCAATTCCATTCTTTCCAATTTTGTTCAACCCCCAATCGCTAGGGTTTAGCCTGCAATTGGGGTTTTAGGGCTTTTATTGTTTGGTGATTGGTGAATTTCGTAAGATACTGTTGGAGATGTTAAGATTATCTTTAATTTCATGGAGTACTGTTTCCTGTTCGTGTTTGGTTATTGGGTTCGAAGAATCATGCACAATGAGAAAAGTTTCTGTCCGTTTGATAATTTATGGTTTCTATATTTTACATAGGTTTTTAAAAAACCAATCTAATGTTTGAAAACTAAAGGCCCCATTTGAGTTTTTTCTTTTTTGGAATTTGAAGTTGTATTTACTCCAATTCTCTACACATGGTTTAAGGAAAGTAGGTGAATTATAAACAAATTCCATGTTTGGAAGCTTTTGTTTTTTAGCTTTCAAATTTTGGTGTGGTTTTTAAAAACATAATTAAAATGTAGATCTCTAAGAAATGAAAATCATGTGTTCCAGTAGTAGTAGGCTTTAATTTCGAACATGTGTATGTGTTGTGATTCACCCTGTTTTCTTTTATTTATAGTTTACACTTTGGAGTCTTGGACTACTAATTTTGTCACAGAGCAATTTAGAAGTTTCTTTCTTTTTGGTTTTATGCCAAGTTGTAGAATATTGGGCTTTTATTTCTTGCTTGATTTATTATGTTTTGATCCACAATTGTAGGTGGAGGTGGGTAATTTCCTATAGAATTGGAAATTGTGTAGCAAGTAACTGAACCAAGGATGAGTAATAGGATGGATAATAACAATGATCAGTCTAGGGGAAGAAAGATTTTTGTTGGGGGCTTATTTCCTGAATTGACTGAGAACGAGTTCAAGAATTACTTCGAAAAGTTCGGTCGGATAACCGATGTAGTTGTGATGCACGACAATGTAACTAACCGTCCTAGAGGGTTTGGATTCATTACTTTTGAATCTGTAGAGTCTGTTGACTCTGTTCTGCGATCTAACTTCCATGAGTTGAATGGTAAGCAAGTGGAGGTGAAGAGAGCTATCCCGAAAAAGGAAAACGGCAACGGAAATGCAAGGGGAGGACGAAGCCCCGTTCCGAATAGCAATGTACCTCCGCCCTCTTATCCATACAATGGTTCTGGTTATACTATTTATCCTGCTTTTGCACCTTATCCACCTTATCAACCTTATGGACAAGGAGTGAATTTTTATGGTTTAAACAACCTCTATGGGAATACGTTTCCCCTGAGCTTCGGTCACACGCCTTCTGGAGGCGCATTGTATAGCCCGAATCTCACTGGAATGTTTCCTCCACCTCATACAAATTCTATGATTAATCCGACATATCCAATCAAGGGGCTCGTTGACACTAATGCTATGAATGGAGTTGCTGATACAAGAAGAAGTGTGGAGATTAAGAGTCCTCCTACTCAAGGAAAGCGAAAGTTGTCAGCTGATGCTGTACCATTTCAGATCAAAGATAGAGCTTGAAAGAGACTTGTTTTACAAATGGAAACTTAGTATTTGTTATTGGATTTGCACCTTACATTAAGGAGGGCATTTGATTTGTAAATTCTGTCACTGATAGAATTAGATCCACCTCTCATTCTTTCTAATCATCTTTTTGAAACTTCTCCTATTGAAATTTTTTTTAGTTTTTTTTTAGTTTTTTC

mRNA sequence

CACACTGCCTTCGACATGGCGTCTGTCTCTTCTCTCTGTTTTTTCTGTTCATCTCTGTAATGTTTAACTTCTAAAAAGTGGAGGTGGGTAATTTCCTATAGAATTGGAAATTGTGTAGCAAGTAACTGAACCAAGGATGAGTAATAGGATGGATAATAACAATGATCAGTCTAGGGGAAGAAAGATTTTTGTTGGGGGCTTATTTCCTGAATTGACTGAGAACGAGTTCAAGAATTACTTCGAAAAGTTCGGTCGGATAACCGATGTAGTTGTGATGCACGACAATGTAACTAACCGTCCTAGAGGGTTTGGATTCATTACTTTTGAATCTGTAGAGTCTGTTGACTCTGTTCTGCGATCTAACTTCCATGAGTTGAATGGTAAGCAAGTGGAGGTGAAGAGAGCTATCCCGAAAAAGGAAAACGGCAACGGAAATGCAAGGGGAGGACGAAGCCCCGTTCCGAATAGCAATGTACCTCCGCCCTCTTATCCATACAATGGTTCTGGTTATACTATTTATCCTGCTTTTGCACCTTATCCACCTTATCAACCTTATGGACAAGGAGTGAATTTTTATGGTTTAAACAACCTCTATGGGAATACGTTTCCCCTGAGCTTCGGTCACACGCCTTCTGGAGGCGCATTGTATAGCCCGAATCTCACTGGAATGTTTCCTCCACCTCATACAAATTCTATGATTAATCCGACATATCCAATCAAGGGGCTCGTTGACACTAATGCTATGAATGGAGTTGCTGATACAAGAAGAAGTGTGGAGATTAAGAGTCCTCCTACTCAAGGAAAGCGAAAGTTGTCAGCTGATGCTGTACCATTTCAGATCAAAGATAGAGCTTGAAAGAGACTTGTTTTACAAATGGAAACTTAGTATTTGTTATTGGATTTGCACCTTACATTAAGGAGGGCATTTGATTTGTAAATTCTGTCACTGATAGAATTAGATCCACCTCTCATTCTTTCTAATCATCTTTTTGAAACTTCTCCTATTGAAATTTTTTTTAGTTTTTTTTTAGTTTTTTC

Coding sequence (CDS)

ATGAGTAATAGGATGGATAATAACAATGATCAGTCTAGGGGAAGAAAGATTTTTGTTGGGGGCTTATTTCCTGAATTGACTGAGAACGAGTTCAAGAATTACTTCGAAAAGTTCGGTCGGATAACCGATGTAGTTGTGATGCACGACAATGTAACTAACCGTCCTAGAGGGTTTGGATTCATTACTTTTGAATCTGTAGAGTCTGTTGACTCTGTTCTGCGATCTAACTTCCATGAGTTGAATGGTAAGCAAGTGGAGGTGAAGAGAGCTATCCCGAAAAAGGAAAACGGCAACGGAAATGCAAGGGGAGGACGAAGCCCCGTTCCGAATAGCAATGTACCTCCGCCCTCTTATCCATACAATGGTTCTGGTTATACTATTTATCCTGCTTTTGCACCTTATCCACCTTATCAACCTTATGGACAAGGAGTGAATTTTTATGGTTTAAACAACCTCTATGGGAATACGTTTCCCCTGAGCTTCGGTCACACGCCTTCTGGAGGCGCATTGTATAGCCCGAATCTCACTGGAATGTTTCCTCCACCTCATACAAATTCTATGATTAATCCGACATATCCAATCAAGGGGCTCGTTGACACTAATGCTATGAATGGAGTTGCTGATACAAGAAGAAGTGTGGAGATTAAGAGTCCTCCTACTCAAGGAAAGCGAAAGTTGTCAGCTGATGCTGTACCATTTCAGATCAAAGATAGAGCTTGA

Protein sequence

MSNRMDNNNDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVESVDSVLRSNFHELNGKQVEVKRAIPKKENGNGNARGGRSPVPNSNVPPPSYPYNGSGYTIYPAFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSPNLTGMFPPPHTNSMINPTYPIKGLVDTNAMNGVADTRRSVEIKSPPTQGKRKLSADAVPFQIKDRA

Homology

[Close]

BLAST of Sed0022792 vs. NCBI nr
Match: XP_038898856.1 (RNA-binding protein 1-like [Benincasa hispida])

HSP 1 Score: 301.6 bits (771), Expect = 6.0e-78
Identity = 169/247 (68.42%), Postives = 191/247 (77.33%), Query Frame = 0


Query: 2   SNRMDNNNDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFI 61
           + RM+NNNDQ RGRKIFVGGL  ELTE+EFKNYFEKFG+ITDVVVMHD+VTNRPRGFGFI
Sbjct: 5   TTRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFGFI 64

Query: 62  TFESVESVDSVLRSNFHELNGKQVEVKRAIPKKENGNG----NAR--GGRSPVPNS--NV 121
           TFESVESVDSVL+SNFHELNG++VEVKRAIPKK N NG    NAR  GG+SP+PNS  NV
Sbjct: 65  TFESVESVDSVLQSNFHELNGRRVEVKRAIPKKGNYNGGHIPNARTQGGKSPLPNSNRNV 124

Query: 122 PPPSYPYNGSGYTIYPAFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSP 181
           P P YPY GS Y +YP F P+P Y   G GV+ YG ++LYGN FP SFG+  S G  Y P
Sbjct: 125 PFP-YPYYGSSYPVYPGFTPFPHYG--GPGVDLYG-SHLYGNWFPPSFGNMASEGTWYGP 184

Query: 182 NL--TGMFPPPHTNSMINPTYPIKGLVDTNAMNGVADTRRSVEIKSPPTQGKRKLSADAV 239
           N    G+FPPP+ NS+I P Y  KGL DT   NG+ DTRR+ EIK   T GKR +SADAV
Sbjct: 185 NFFGVGIFPPPYRNSLIPPIYSSKGLSDTGTGNGMVDTRRNGEIKQ-NTTGKRIMSADAV 244

[Close]

BLAST of Sed0022792 vs. NCBI nr
Match: XP_022982410.1 (RNA-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 264.6 bits (675), Expect = 8.2e-67
Identity = 144/230 (62.61%), Postives = 166/230 (72.17%), Query Frame = 0


Query: 10  DQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVESV 69
           DQ RGRKIFVGGL  ELTE++FKNYFEKFGR+TDVVVM D+VT RPRGFGFITF+SV+SV
Sbjct: 9   DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68

Query: 70  DSVLRSNFHELNGKQVEVKRAIPKKENGNGNARGGRSPVPNSNVPPPSYPYNGSGYTIYP 129
           DSVL++NFHELNG++VEVKRAIPKK N NG     +SP+  SNV  PSYPY   GYT+YP
Sbjct: 69  DSVLQNNFHELNGRRVEVKRAIPKKGNYNG-GHISKSPLSESNV-LPSYPYYSCGYTVYP 128

Query: 130 AFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSPNLTGMFPPPHTNSMIN 189
            F P+P   PYG G   YG ++ YGN F  SFG   S  A Y PN  GMFPPPH NS++ 
Sbjct: 129 GFTPFP---PYGPGFGLYG-SDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVY 188

Query: 190 PTYPIKGLVDTNAMNGVADTRRSVEIKSPPTQGKRKLSADAVPFQIKDRA 240
           PTY   GL    A    AD RR VE   PPT+ ++ +SADAVPF  KDRA
Sbjct: 189 PTYSSNGLSTPVAGYETADARRKVE---PPTRAQKNMSADAVPFHAKDRA 229

[Close]

BLAST of Sed0022792 vs. NCBI nr
Match: XP_022940975.1 (RNA-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 262.7 bits (670), Expect = 3.1e-66
Identity = 142/230 (61.74%), Postives = 167/230 (72.61%), Query Frame = 0


Query: 10  DQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVESV 69
           DQ RGRKIFVGGL  ELTE++FKNYFEKFGR+TDVVVM D+VT RPRGFGFITF+SV+SV
Sbjct: 9   DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68

Query: 70  DSVLRSNFHELNGKQVEVKRAIPKKENGNGNARGGRSPVPNSNVPPPSYPYNGSGYTIYP 129
           DSVL++NFHELNG++VEVKRAIPKK N NG     +SP+  SNV  PSYPY   GYT+YP
Sbjct: 69  DSVLQNNFHELNGRRVEVKRAIPKKGNYNG-GHISKSPLSESNV-LPSYPYYSCGYTVYP 128

Query: 130 AFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSPNLTGMFPPPHTNSMIN 189
            F P+P   PYG G   YG ++ YGN F  SFG   S  A Y+PN  GMFPPPH NS++ 
Sbjct: 129 GFTPFP---PYGPGFGLYG-SDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKNSLVY 188

Query: 190 PTYPIKGLVDTNAMNGVADTRRSVEIKSPPTQGKRKLSADAVPFQIKDRA 240
           PTY   GL    A    AD RR V+   PPT+ ++ +SADAVPF  KD+A
Sbjct: 189 PTYSSNGLSTPVAGYETADARRKVD---PPTRAQKNMSADAVPFHAKDKA 229

[Close]

BLAST of Sed0022792 vs. NCBI nr
Match: XP_023524364.1 (RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.5 bits (667), Expect = 6.9e-66
Identity = 142/230 (61.74%), Postives = 167/230 (72.61%), Query Frame = 0


Query: 10  DQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVESV 69
           DQ RGRKIFVGGL  ELTE++FKNYFEKFGR+TDVVVM D+VT RPRGFGFITF+SV+SV
Sbjct: 9   DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68

Query: 70  DSVLRSNFHELNGKQVEVKRAIPKKENGNGNARGGRSPVPNSNVPPPSYPYNGSGYTIYP 129
           DSVL++NFHELNG++VEVKRAIPKK N NG     +SP+  SNV  PSYPY   GYT+YP
Sbjct: 69  DSVLQNNFHELNGRRVEVKRAIPKKGNYNG-GHISKSPLSESNV-LPSYPYYSCGYTVYP 128

Query: 130 AFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSPNLTGMFPPPHTNSMIN 189
            F P+P   PYG G   YG ++ YGN F  SFG   S  A Y+PN  GMFPPPH NS++ 
Sbjct: 129 GFTPFP---PYGPGFGLYG-SDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKNSLVY 188

Query: 190 PTYPIKGLVDTNAMNGVADTRRSVEIKSPPTQGKRKLSADAVPFQIKDRA 240
           PTY   GL    A    AD RR VE   PP++ ++ +SADAVPF  KD+A
Sbjct: 189 PTYSSNGLSTPVAGYETADGRRKVE---PPSRAQKNMSADAVPFHAKDKA 229

[Close]

BLAST of Sed0022792 vs. NCBI nr
Match: KAG7037746.1 (RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.5 bits (659), Expect = 5.9e-65
Identity = 143/239 (59.83%), Postives = 170/239 (71.13%), Query Frame = 0


Query: 4   RMDNN---NDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGF 63
           RM N     DQ RGRKIFVGGL  ELTE++FK+YFEKFGR+TDVVVM D+VT RPRGFGF
Sbjct: 19  RMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGF 78

Query: 64  ITFESVESVDSVLRSNFHELNGKQVEVKRAIPKKENGNGNARGGRSPVPNSNVPPPSYPY 123
           ITF+SV+SVDSVL++NFHELNG++VEVKRAIPKK N NG     +SP+  SNV  PSYPY
Sbjct: 79  ITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNG-GHISKSPLSESNV-LPSYPY 138

Query: 124 NGSGYTIYPAFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSPNLTGMFP 183
              GYT+YP F P+P   PYG G   YG ++ YGN F  SFG   S  A Y+PN  GMFP
Sbjct: 139 YSCGYTVYPGFTPFP---PYGPGFGLYG-SDPYGNWFSPSFGPMASPAAWYAPNFFGMFP 198

Query: 184 PPHTNSMINPTYPIKGLVDTNAMNGVADTRRSVEIKSPPTQGKRKLSADAVPFQIKDRA 240
           PPH +S++ PTY   GL    A    AD RR V+   PPT+ ++ +SADAVPF  KD+A
Sbjct: 199 PPHKDSLVYPTYSSNGLSTPVAGYETADARRKVD---PPTRAQKNMSADAVPFHAKDKA 248

[Close]

BLAST of Sed0022792 vs. ExPASy Swiss-Prot
Match: Q9C652 (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.9e-30
Identity = 83/186 (44.62%), Postives = 108/186 (58.06%), Query Frame = 0


Query: 5   MDNNNDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFE 64
           M +N   SR +KIFVGGL    TE EFK+YFE+FGR TDVVVMHD VTNRPRGFGF+T++
Sbjct: 110 MSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYD 169

Query: 65  SVESVDSVLRSNFHELNGKQVEVKRAIPKK--ENGNGNARGGRSPVPNSNVPPPSYPYNG 124
           S +SV+ V++SNFHEL+ K+VEVKRAIPK+  ++ NGNA          N+PP    +  
Sbjct: 170 SEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNA---------VNIPPSYSSFQA 229

Query: 125 SGYTI----YPAFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSPNLTGM 184
           + Y      Y     +PP   +G   N   +   YG  F     +      +  P  TG 
Sbjct: 230 TPYVPEQNGYGMVLQFPP-PVFGYHHNVQAVQYPYGYQFTAQVANVSWNNPIMQP--TGF 283

[Close]

BLAST of Sed0022792 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.5e-26
Identity = 70/157 (44.59%), Postives = 95/157 (60.51%), Query Frame = 0


Query: 2   SNRMDNNNDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFI 61
           ++R    +  ++ +KIFVGGL P LT+ EF+ YFE +G +TDV +M+D  TNRPRGFGF+
Sbjct: 97  TSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFV 156

Query: 62  TFESVESVDSVLRSNFHELNGKQVEVKRAIPKKENGNGNARGGRSPVPNSNVPPPSYPYN 121
           +F+S ++VDSVL   FH+L+GKQVEVKRA+PK  N  G   GGRS     +     Y  N
Sbjct: 157 SFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGG---GGRSMGGGGSGGYQGYGGN 216

Query: 122 GSGYTIYPAFAPYPPYQPYGQGVNFYGLNNL---YGN 156
            S Y        +  +Q  G G+  YG +     YGN
Sbjct: 217 ESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYGAGYGN 250

[Close]

BLAST of Sed0022792 vs. ExPASy Swiss-Prot
Match: Q96EP5 (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-19
Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 0


Query: 9   NDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVES 68
           +D S+  KIFVGG+     E E + YF+KFG +T+VV+++D    RPRGFGFITFE  +S
Sbjct: 107 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166

Query: 69  VDSVLRSNFHELNGKQVEVKRAIPKKENGN-----GNARGGRSPVPN-----SNVPPPSY 128
           VD  +  +FH++ GK+VEVKRA P+          G ++ G   VPN     +  PPP++
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTW 226

Query: 129 PYNGSGYTIYPAFAPYPPYQPYGQGVNFYG 149
                       + P   + P GQ +  YG
Sbjct: 227 ---------QQGYGPQGMWVPAGQAIGGYG 247

[Close]

BLAST of Sed0022792 vs. ExPASy Swiss-Prot
Match: Q98SJ2 (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.0e-19
Identity = 61/173 (35.26%), Postives = 86/173 (49.71%), Query Frame = 0


Query: 10  DQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVESV 69
           + SR  KIFVGG+     E E K YF +FG +T+VV+++D    RPRGFGFITFE  +SV
Sbjct: 109 ENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 168

Query: 70  DSVLRSNFHELNGKQVEVKRAIPKKENGNGNARGGRSPVPNSNVPPPSYPYNGSGYTIYP 129
           D  +  +FH++ GK+VEVKRA P+          G +   +  +   +  + G     + 
Sbjct: 169 DQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQ 228

Query: 130 AFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSPNLTGMFPPP 183
            ++P   + P GQ +  YG     G   P      PS          G FPPP
Sbjct: 229 GYSPQGMWMPTGQTIGGYGQPAGRGGPPP-----PPSFAPFLVSTTPGPFPPP 276

[Close]

BLAST of Sed0022792 vs. ExPASy Swiss-Prot
Match: Q9JII5 (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 5.0e-19
Identity = 55/141 (39.01%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 9   NDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVES 68
           +D S+  KIFVGG+     E E + YF+KFG +T+VV+++D    RPRGFGFITFE  +S
Sbjct: 107 SDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166

Query: 69  VDSVLRSNFHELNGKQVEVKRAIPKKENGNGNARGGRSPVPNSNVPPPSYPYNGS-GYTI 128
           VD  +  +FH++ GK+VEVKRA P+        + G S   +   P  +  + G    T 
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTW 226

Query: 129 YPAFAPYPPYQPYGQGVNFYG 149
              + P   + P GQ +  YG
Sbjct: 227 QQGYGPQGMWVPAGQAIGGYG 247

[Close]

BLAST of Sed0022792 vs. ExPASy TrEMBL
Match: A0A6J1J2K5 (RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 4.0e-67
Identity = 144/230 (62.61%), Postives = 166/230 (72.17%), Query Frame = 0


Query: 10  DQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVESV 69
           DQ RGRKIFVGGL  ELTE++FKNYFEKFGR+TDVVVM D+VT RPRGFGFITF+SV+SV
Sbjct: 9   DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68

Query: 70  DSVLRSNFHELNGKQVEVKRAIPKKENGNGNARGGRSPVPNSNVPPPSYPYNGSGYTIYP 129
           DSVL++NFHELNG++VEVKRAIPKK N NG     +SP+  SNV  PSYPY   GYT+YP
Sbjct: 69  DSVLQNNFHELNGRRVEVKRAIPKKGNYNG-GHISKSPLSESNV-LPSYPYYSCGYTVYP 128

Query: 130 AFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSPNLTGMFPPPHTNSMIN 189
            F P+P   PYG G   YG ++ YGN F  SFG   S  A Y PN  GMFPPPH NS++ 
Sbjct: 129 GFTPFP---PYGPGFGLYG-SDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVY 188

Query: 190 PTYPIKGLVDTNAMNGVADTRRSVEIKSPPTQGKRKLSADAVPFQIKDRA 240
           PTY   GL    A    AD RR VE   PPT+ ++ +SADAVPF  KDRA
Sbjct: 189 PTYSSNGLSTPVAGYETADARRKVE---PPTRAQKNMSADAVPFHAKDRA 229

[Close]

BLAST of Sed0022792 vs. ExPASy TrEMBL
Match: A0A6J1FS87 (RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.5e-66
Identity = 142/230 (61.74%), Postives = 167/230 (72.61%), Query Frame = 0


Query: 10  DQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVESV 69
           DQ RGRKIFVGGL  ELTE++FKNYFEKFGR+TDVVVM D+VT RPRGFGFITF+SV+SV
Sbjct: 9   DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68

Query: 70  DSVLRSNFHELNGKQVEVKRAIPKKENGNGNARGGRSPVPNSNVPPPSYPYNGSGYTIYP 129
           DSVL++NFHELNG++VEVKRAIPKK N NG     +SP+  SNV  PSYPY   GYT+YP
Sbjct: 69  DSVLQNNFHELNGRRVEVKRAIPKKGNYNG-GHISKSPLSESNV-LPSYPYYSCGYTVYP 128

Query: 130 AFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSPNLTGMFPPPHTNSMIN 189
            F P+P   PYG G   YG ++ YGN F  SFG   S  A Y+PN  GMFPPPH NS++ 
Sbjct: 129 GFTPFP---PYGPGFGLYG-SDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKNSLVY 188

Query: 190 PTYPIKGLVDTNAMNGVADTRRSVEIKSPPTQGKRKLSADAVPFQIKDRA 240
           PTY   GL    A    AD RR V+   PPT+ ++ +SADAVPF  KD+A
Sbjct: 189 PTYSSNGLSTPVAGYETADARRKVD---PPTRAQKNMSADAVPFHAKDKA 229

[Close]

BLAST of Sed0022792 vs. ExPASy TrEMBL
Match: A0A0A0L563 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 6.5e-62
Identity = 148/245 (60.41%), Postives = 174/245 (71.02%), Query Frame = 0


Query: 2   SNRMDNNNDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFI 61
           + RMDNNNDQ RGRKIFVGGL  ELTE EF++YFE FG+ITDVVVMHD+VTNRPRGFGF+
Sbjct: 3   TTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFGFV 62

Query: 62  TFESVESVDSVLRSNFHELNGKQVEVKRAIPKKENGNG----NARGGRSPV--PNSNVPP 121
           TFES+ESVDSVL+ NFHELNG++VEVKRAIPKK N NG    NAR  +SP+   N NVP 
Sbjct: 63  TFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNARAAKSPLLNGNRNVPF 122

Query: 122 PSYPYNGSGYTIYPAFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSPNL 181
           P YPY GSGY IYP F  +P    YG  V+ YG +N YGN FP    +  S G  + PN 
Sbjct: 123 P-YPYYGSGYPIYPGFTHFP---HYGAAVDSYG-SNFYGNWFPPGSANIASDGWWHGPNF 182

Query: 182 --TGMFPPPHTNSMINPTYPIKGLVDTNAMNGVADTRRSVEIKSPPTQGKRKLSADAVPF 239
              GM PP   NS+++P+   KG+    + NG+A+TR   EIK   T GKR +SADA PF
Sbjct: 183 FSVGMLPPLCRNSLMHPS---KGIY-IGSRNGMANTRNG-EIKQ-NTAGKRIMSADAAPF 236

[Close]

BLAST of Sed0022792 vs. ExPASy TrEMBL
Match: A0A6J1C724 (RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 136/250 (54.40%), Postives = 168/250 (67.20%), Query Frame = 0


Query: 2   SNRMDNNNDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFI 61
           SNRM++NNDQSRG+KIFVGGL  +LTENEFK+YFEKFG+ITDVVVM D+VTNRPRGFGFI
Sbjct: 5   SNRMESNNDQSRGKKIFVGGLPSDLTENEFKSYFEKFGQITDVVVMQDSVTNRPRGFGFI 64

Query: 62  TFESVESVDSVLRSNFHELNGKQVEVKRAIPKKENGN-GNARGGRSPVPNSNVPPPSYPY 121
           TF+SVESV+ VL++NFHELNG++VEVKRA+PK  N N  N + G+SP+  S   P  YP+
Sbjct: 65  TFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPL--SPHVPLYYPH 124

Query: 122 NGSGYTIYPAFAPYPPYQPYGQGVNFYG---LNNLYGNTFPLSFGH----TPSGGALYSP 181
             SG  +YP +AP+P Y     G + YG    N LYG       GH     P G A Y+P
Sbjct: 125 FSSGPVVYPGYAPFPHY----YGSSLYGSWHYNGLYGT------GHEAPPLPLGSAWYAP 184

Query: 182 NL--TGMFPPPHTNSMINPTYPIKG--LVDTNAMNGVADTRRSVEIKSPPTQGKRKLSAD 240
           N+   GMFP P+ NS+I+P Y  KG  L+D  A NG    RR+             +SAD
Sbjct: 185 NVFGDGMFPSPYINSVIHPVYSSKGGRLLDPMAGNG----RRN-----------GNMSAD 227

[Close]

BLAST of Sed0022792 vs. ExPASy TrEMBL
Match: A0A6J1ACM6 (RNA-binding protein 1 OS=Herrania umbratica OX=108875 GN=LOC110417078 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.3e-37
Identity = 113/254 (44.49%), Postives = 149/254 (58.66%), Query Frame = 0


Query: 2   SNRMDNNNDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFI 61
           S+  D+NN Q R +KIFVGGL   LTE EFKNYFE+FGRITDVVVMHD+ TNRPRGFGF+
Sbjct: 113 SDAADSNN-QFRTKKIFVGGLSASLTEEEFKNYFERFGRITDVVVMHDSSTNRPRGFGFV 172

Query: 62  TFESVESVDSVLRSNFHELNGKQVEVKRAIPKK----ENGNGNARGG--RSPVPNSNVPP 121
           TFES ESV++V++ +FHELN + VEVKRA+PK+     N N N + G  R  + N    P
Sbjct: 173 TFESEESVENVMQKSFHELNNRLVEVKRAVPKEGNNGSNSNHNMKAGVVRGSLYN-GFQP 232

Query: 122 PSYPYNGSGYTIYPAFAPYPPYQPYGQGVNFYGLNNLYGNTFP------LSFGHTPS--G 181
             YP N  GY I+P +AP P Y   G  V  YG   +YG+ +P        +G TP+   
Sbjct: 233 VEYPSNSPGYGIFPGYAPLPGYDAVGGYV--YG-TGVYGSGYPTVVYGRFGYGVTPATPR 292

Query: 182 GALYSPNLTG--MFPPPHTNSMINPTYPIKGLVDTNAMNGVADTRRSVEIKSPPTQ---G 237
             LY+P + G  + P P+  + I P Y   G+     ++GV +      +     Q   G
Sbjct: 293 SPLYAPVMLGARVCPLPYGGASIYPAYMNGGVGLMGTVSGVYNGIIGTSVDGKQNQVPGG 352

[Close]

BLAST of Sed0022792 vs. TAIR 10
Match: AT1G58470.1 (RNA-binding protein 1 )

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-31
Identity = 83/186 (44.62%), Postives = 108/186 (58.06%), Query Frame = 0


Query: 5   MDNNNDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFE 64
           M +N   SR +KIFVGGL    TE EFK+YFE+FGR TDVVVMHD VTNRPRGFGF+T++
Sbjct: 110 MSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYD 169

Query: 65  SVESVDSVLRSNFHELNGKQVEVKRAIPKK--ENGNGNARGGRSPVPNSNVPPPSYPYNG 124
           S +SV+ V++SNFHEL+ K+VEVKRAIPK+  ++ NGNA          N+PP    +  
Sbjct: 170 SEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNA---------VNIPPSYSSFQA 229

Query: 125 SGYTI----YPAFAPYPPYQPYGQGVNFYGLNNLYGNTFPLSFGHTPSGGALYSPNLTGM 184
           + Y      Y     +PP   +G   N   +   YG  F     +      +  P  TG 
Sbjct: 230 TPYVPEQNGYGMVLQFPP-PVFGYHHNVQAVQYPYGYQFTAQVANVSWNNPIMQP--TGF 283

[Close]

BLAST of Sed0022792 vs. TAIR 10
Match: AT2G33410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-27
Identity = 77/183 (42.08%), Postives = 96/183 (52.46%), Query Frame = 0


Query: 13  RGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVESVDSV 72
           R +KIFVGGL P LT +EF+ YFE +G ++D V+M D  T RPRGFGF++F+S +SVD V
Sbjct: 108 RTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLV 167

Query: 73  LRSNFHELNGKQVEVKRAIPKKEN-----GNGNARGGRSPVPNSNVPPPSYPYNGSGYTI 132
           L   FH+LNGKQVEVKRA+PK  N     G G   GG    P          Y GSG + 
Sbjct: 168 LHKTFHDLNGKQVEVKRALPKDANPGIASGGGRGSGGAGGFPG---------YGGSGGSG 227

Query: 133 YP-------------AFAPYPPYQPYGQGVNF-YGLNNL-------YGNTFPLSFGHTPS 170
           Y                + YPPY   G G  + YG N +       YGN     +G+   
Sbjct: 228 YEGRVDSNRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGVGYGGFGGYGNPAGAPYGNPSV 281

[Close]

BLAST of Sed0022792 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-27
Identity = 70/157 (44.59%), Postives = 95/157 (60.51%), Query Frame = 0


Query: 2   SNRMDNNNDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFI 61
           ++R    +  ++ +KIFVGGL P LT+ EF+ YFE +G +TDV +M+D  TNRPRGFGF+
Sbjct: 97  TSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFV 156

Query: 62  TFESVESVDSVLRSNFHELNGKQVEVKRAIPKKENGNGNARGGRSPVPNSNVPPPSYPYN 121
           +F+S ++VDSVL   FH+L+GKQVEVKRA+PK  N  G   GGRS     +     Y  N
Sbjct: 157 SFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGG---GGRSMGGGGSGGYQGYGGN 216

Query: 122 GSGYTIYPAFAPYPPYQPYGQGVNFYGLNNL---YGN 156
            S Y        +  +Q  G G+  YG +     YGN
Sbjct: 217 ESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYGAGYGN 250

[Close]

BLAST of Sed0022792 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 119.8 bits (299), Expect = 3.0e-27
Identity = 84/174 (48.28%), Postives = 99/174 (56.90%), Query Frame = 0


Query: 8   NNDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVE 67
           N   +R +KIFVGGL   +TE EFKNYF++FG I DVVVM+D+ T RPRGFGFITF+S E
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174

Query: 68  SVDSVLRSNFHELNGKQVEVKRAIPKKEN----------GNGNARGGRSPVPNS------ 127
           SVD VL   FHELNGK VEVKRA+PK+ +          G GN  G    VPN       
Sbjct: 175 SVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYG---VVPNRSSANSY 234

Query: 128 -NVPPPSYPYN--GSGYTIYPAFAPYPPYQPYGQGVN-FYGLN-NLYGNTFPLS 161
            N  PP Y  N  GS     P  +    +  +G G+N    LN N  GNT   S
Sbjct: 235 FNSFPPGYNNNNLGSAGRFSPIGSGRNAFSSFGLGLNQELNLNSNFDGNTLGYS 285

[Close]

BLAST of Sed0022792 vs. TAIR 10
Match: AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 119.8 bits (299), Expect = 3.0e-27
Identity = 84/174 (48.28%), Postives = 99/174 (56.90%), Query Frame = 0


Query: 8   NNDQSRGRKIFVGGLFPELTENEFKNYFEKFGRITDVVVMHDNVTNRPRGFGFITFESVE 67
           N   +R +KIFVGGL   +TE EFKNYF++FG I DVVVM+D+ T RPRGFGFITF+S E
Sbjct: 112 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 171

Query: 68  SVDSVLRSNFHELNGKQVEVKRAIPKKEN----------GNGNARGGRSPVPNS------ 127
           SVD VL   FHELNGK VEVKRA+PK+ +          G GN  G    VPN       
Sbjct: 172 SVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYG---VVPNRSSANSY 231

Query: 128 -NVPPPSYPYN--GSGYTIYPAFAPYPPYQPYGQGVN-FYGLN-NLYGNTFPLS 161
            N  PP Y  N  GS     P  +    +  +G G+N    LN N  GNT   S
Sbjct: 232 FNSFPPGYNNNNLGSAGRFSPIGSGRNAFSSFGLGLNQELNLNSNFDGNTLGYS 282

The following BLAST results are available for this feature:

BLAST of Sed0022792 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898856.1	6.0e-78	68.42	RNA-binding protein 1-like [Benincasa hispida]	[more]
XP_022982410.1	8.2e-67	62.61	RNA-binding protein 1-like [Cucurbita maxima]	[more]
XP_022940975.1	3.1e-66	61.74	RNA-binding protein 1-like [Cucurbita moschata]	[more]
XP_023524364.1	6.9e-66	61.74	RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7037746.1	5.9e-65	59.83	RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Sed0022792 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C652	2.9e-30	44.62	RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1	[more]
Q8W034	2.5e-26	44.59	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
Q96EP5	1.0e-19	38.67	DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1	[more]
Q98SJ2	1.0e-19	35.26	DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1	[more]
Q9JII5	5.0e-19	39.01	DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2	[more]

BLAST of Sed0022792 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2K5	4.0e-67	62.61	RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1	[more]
A0A6J1FS87	1.5e-66	61.74	RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV...	[more]
A0A0A0L563	6.5e-62	60.41	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV...	[more]
A0A6J1C724	1.1e-53	54.40	RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 S...	[more]
A0A6J1ACM6	3.3e-37	44.49	RNA-binding protein 1 OS=Herrania umbratica OX=108875 GN=LOC110417078 PE=4 SV=1	[more]

BLAST of Sed0022792 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G58470.1	2.0e-31	44.62	RNA-binding protein 1	[more]
AT2G33410.1	1.8e-27	42.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	1.8e-27	44.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	3.0e-27	48.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.2	3.0e-27	48.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 16..88 e-value: 2.4E-23 score: 93.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 17..85 e-value: 4.9E-17 score: 61.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 15..92 score: 18.222727
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..124 e-value: 1.1E-27 score: 98.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..115
None	No IPR available	PANTHER	PTHR48032:SF12	NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED	coord: 5..189
None	No IPR available	PANTHER	PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	coord: 5..189
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022792.1	Sed0022792.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding