Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATCTTCCTCGTTTTGGGCGCACATGGCAGCGCTTCTCTTCCCTGCCCCGCCCTGGCACTGCCCCACGCCCTGAAATTCAGGCGACGGCGGAGCCGGAAGTGTATCCCTCCGCTCAGGCCACCACCAATATTCTCCAAACTTCCCCTGCTAGAGAAAGAGCTTCTGCTATCTCCTCTCCGGTCCGGAAATATCCCTCGCCCCCGTCTTCTCCGATCTACAGGGCCGCCGCCACCACTTCGCCCAAAGCTTTCAAAACGGCCCTTTCTCCGCCGCGATCGCCGCCTTTGCCACGCTCGCCCAGACATGAACCGGTTCGATCCAGGAGCCCACCAGAGGTTAACTCAATCCTTTCTAATTCGTATCAATTTTAAGTGTTCTTATAATAATAATCAAAAAGTTACTAATTTGAATCTTATTATATTGTGCTTGAATTAAAAATGGAATCTTCACAAAGTATATATAGTTGAAAATAAAATATTGTAACCAATATCCCATCTCATACAAAATGATCAATACTTCTCTTGGTAAAGTTTGAAGGACTTGGGTAATTAAATGACAAGTGATTATATACATATTGTTAAGCAGGTCCAGCAGAAAAGCGTCCTTTACCAGAAGACAACGACGGCGGCGGAGAAGGCAGCGAAAACCGAGCACCGAGCGTCGGAGTACAGTTCGGGCAAACCACACCAGAAGCAGCATCAGCAGCAAAGCGATGTTATAAACATAAAAGGGGAGAATGTCGGGGCCGTAATGCACATCACGGAATCCCCCTCGGGTGGCACAGAGATTCACAAGAAAAATCCAATGAGCACAGTAACCCACCACAGCAACAACGAAGACAACGATGAACTGAAAACAAACAAGAAAGCAAGCACCAGCTCTTCTAGTTTGCCTGGAAAGTCCTTCATGAACACCAATTTTCAAGGGGTCAACAATTCCATTCTCTACAATTCTTCTTTGACCCACCGTGATCCAGGCCTCCACCTTGCCTTCTCCAACAAGCCCCCCCATTCCCCTTCTCATTCAACCCACTAA
mRNA sequence
ATGGCAAATCTTCCTCGTTTTGGGCGCACATGGCAGCGCTTCTCTTCCCTGCCCCGCCCTGGCACTGCCCCACGCCCTGAAATTCAGGCGACGGCGGAGCCGGAAGTGTATCCCTCCGCTCAGGCCACCACCAATATTCTCCAAACTTCCCCTGCTAGAGAAAGAGCTTCTGCTATCTCCTCTCCGGTCCGGAAATATCCCTCGCCCCCGTCTTCTCCGATCTACAGGGCCGCCGCCACCACTTCGCCCAAAGCTTTCAAAACGGCCCTTTCTCCGCCGCGATCGCCGCCTTTGCCACGCTCGCCCAGACATGAACCGGTTCGATCCAGGAGCCCACCAGAGGTCCAGCAGAAAAGCGTCCTTTACCAGAAGACAACGACGGCGGCGGAGAAGGCAGCGAAAACCGAGCACCGAGCGTCGGAGTACAGTTCGGGCAAACCACACCAGAAGCAGCATCAGCAGCAAAGCGATGTTATAAACATAAAAGGGGAGAATGTCGGGGCCGTAATGCACATCACGGAATCCCCCTCGGGTGGCACAGAGATTCACAAGAAAAATCCAATGAGCACAGTAACCCACCACAGCAACAACGAAGACAACGATGAACTGAAAACAAACAAGAAAGCAAGCACCAGCTCTTCTAGTTTGCCTGGAAAGTCCTTCATGAACACCAATTTTCAAGGGGTCAACAATTCCATTCTCTACAATTCTTCTTTGACCCACCGTGATCCAGGCCTCCACCTTGCCTTCTCCAACAAGCCCCCCCATTCCCCTTCTCATTCAACCCACTAA
Coding sequence (CDS)
ATGGCAAATCTTCCTCGTTTTGGGCGCACATGGCAGCGCTTCTCTTCCCTGCCCCGCCCTGGCACTGCCCCACGCCCTGAAATTCAGGCGACGGCGGAGCCGGAAGTGTATCCCTCCGCTCAGGCCACCACCAATATTCTCCAAACTTCCCCTGCTAGAGAAAGAGCTTCTGCTATCTCCTCTCCGGTCCGGAAATATCCCTCGCCCCCGTCTTCTCCGATCTACAGGGCCGCCGCCACCACTTCGCCCAAAGCTTTCAAAACGGCCCTTTCTCCGCCGCGATCGCCGCCTTTGCCACGCTCGCCCAGACATGAACCGGTTCGATCCAGGAGCCCACCAGAGGTCCAGCAGAAAAGCGTCCTTTACCAGAAGACAACGACGGCGGCGGAGAAGGCAGCGAAAACCGAGCACCGAGCGTCGGAGTACAGTTCGGGCAAACCACACCAGAAGCAGCATCAGCAGCAAAGCGATGTTATAAACATAAAAGGGGAGAATGTCGGGGCCGTAATGCACATCACGGAATCCCCCTCGGGTGGCACAGAGATTCACAAGAAAAATCCAATGAGCACAGTAACCCACCACAGCAACAACGAAGACAACGATGAACTGAAAACAAACAAGAAAGCAAGCACCAGCTCTTCTAGTTTGCCTGGAAAGTCCTTCATGAACACCAATTTTCAAGGGGTCAACAATTCCATTCTCTACAATTCTTCTTTGACCCACCGTGATCCAGGCCTCCACCTTGCCTTCTCCAACAAGCCCCCCCATTCCCCTTCTCATTCAACCCACTAA
Protein sequence
MANLPRFGRTWQRFSSLPRPGTAPRPEIQATAEPEVYPSAQATTNILQTSPARERASAISSPVRKYPSPPSSPIYRAAATTSPKAFKTALSPPRSPPLPRSPRHEPVRSRSPPEVQQKSVLYQKTTTAAEKAAKTEHRASEYSSGKPHQKQHQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPMSTVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHLAFSNKPPHSPSHSTH
Homology
BLAST of Sed0022787 vs. NCBI nr
Match:
XP_022945677.1 (DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata])
HSP 1 Score: 298.9 bits (764), Expect = 4.3e-77
Identity = 194/311 (62.38%), Postives = 214/311 (68.81%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
MANLPRFGRTW RFSSLPRPGTAPR P AT+EPEVYPSA T N+LQTSP +ER+
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
Query: 61 AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
I+SPVRKYPSPP+SP YRAAA + SPK FKT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
SPPRSP P SP RHEP VR RSPPEVQQKSVLYQKTT +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTT--S 180
Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S TE HKK P
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240
Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
TV++ S NE K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298
BLAST of Sed0022787 vs. NCBI nr
Match:
KAG6597058.1 (hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 298.9 bits (764), Expect = 4.3e-77
Identity = 194/311 (62.38%), Postives = 214/311 (68.81%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
MANLPRFGRTW RFSSLPRPGTAPR P AT+EPEVYPSA T N+LQTSP +ER+
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
Query: 61 AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
I+SPVRKYPSPP+SP YRAAA + SPK FKT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
SPPRSP P SP RHEP VR RSPPEVQQKSVLYQKTT +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180
Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S TE HKK P
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240
Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
TV++ S NE K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298
BLAST of Sed0022787 vs. NCBI nr
Match:
XP_023538835.1 (proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 292.4 bits (747), Expect = 4.0e-75
Identity = 191/311 (61.41%), Postives = 210/311 (67.52%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
MANLPRFGRTW RFSSLPRPGTAPR P A +EPEVYP T N+LQTSP +ER+
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAAASEPEVYPPPPRTANVLQTSPIKERSP 60
Query: 61 AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
I SPVRKYPSPP+SP YRAAA + SPK FKT
Sbjct: 61 RIPSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRTSALASPKTFKTTYT 120
Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
SPPRSP P SP RHEP VR RSPPEVQQKSVLYQKTT +
Sbjct: 121 SPPRSPAKHKYSTSTLQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180
Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S TE HKK P
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240
Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
TV++ S NE K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298
BLAST of Sed0022787 vs. NCBI nr
Match:
XP_022974814.1 (DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_022974815.1 DNA-directed RNA polymerase II subunit 1-like isoform X3 [Cucurbita maxima])
HSP 1 Score: 292.0 bits (746), Expect = 5.3e-75
Identity = 191/311 (61.41%), Postives = 212/311 (68.17%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
MANLPRFGRTW RFSSLPRP TAPR P AT+EPEV+ SA T N+LQTSP +ER+
Sbjct: 1 MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
Query: 61 AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
I+SPVRKYPSPP+SP YRAAA + SPK FKT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
SPPRSP P SP RHEP VR RSPPEVQQKSVLYQKTT +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180
Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S TE HKK P
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240
Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
TV++ S NE K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298
BLAST of Sed0022787 vs. NCBI nr
Match:
XP_022974813.1 (DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima])
HSP 1 Score: 288.5 bits (737), Expect = 5.8e-74
Identity = 190/311 (61.09%), Postives = 211/311 (67.85%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
MANLPRFGRTW RFSSLPRP TAPR P AT+EPEV+ SA T N+LQTSP +ER+
Sbjct: 1 MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
Query: 61 AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
I+SPVRKY SPP+SP YRAAA + SPK FKT
Sbjct: 61 RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
SPPRSP P SP RHEP VR RSPPEVQQKSVLYQKTT +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180
Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S TE HKK P
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240
Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
TV++ S NE K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298
BLAST of Sed0022787 vs. ExPASy TrEMBL
Match:
A0A6J1G1L2 (DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC111449836 PE=4 SV=1)
HSP 1 Score: 298.9 bits (764), Expect = 2.1e-77
Identity = 194/311 (62.38%), Postives = 214/311 (68.81%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
MANLPRFGRTW RFSSLPRPGTAPR P AT+EPEVYPSA T N+LQTSP +ER+
Sbjct: 1 MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60
Query: 61 AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
I+SPVRKYPSPP+SP YRAAA + SPK FKT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120
Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
SPPRSP P SP RHEP VR RSPPEVQQKSVLYQKTT +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTT--S 180
Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S TE HKK P
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240
Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
TV++ S NE K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298
BLAST of Sed0022787 vs. ExPASy TrEMBL
Match:
A0A6J1IEX0 (DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)
HSP 1 Score: 292.0 bits (746), Expect = 2.5e-75
Identity = 191/311 (61.41%), Postives = 212/311 (68.17%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
MANLPRFGRTW RFSSLPRP TAPR P AT+EPEV+ SA T N+LQTSP +ER+
Sbjct: 1 MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
Query: 61 AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
I+SPVRKYPSPP+SP YRAAA + SPK FKT
Sbjct: 61 RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
SPPRSP P SP RHEP VR RSPPEVQQKSVLYQKTT +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180
Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S TE HKK P
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240
Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
TV++ S NE K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298
BLAST of Sed0022787 vs. ExPASy TrEMBL
Match:
A0A6J1IHF4 (DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)
HSP 1 Score: 288.5 bits (737), Expect = 2.8e-74
Identity = 190/311 (61.09%), Postives = 211/311 (67.85%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
MANLPRFGRTW RFSSLPRP TAPR P AT+EPEV+ SA T N+LQTSP +ER+
Sbjct: 1 MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
Query: 61 AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
I+SPVRKY SPP+SP YRAAA + SPK FKT
Sbjct: 61 RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
SPPRSP P SP RHEP VR RSPPEVQQKSVLYQKTT +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180
Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S TE HKK P
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240
Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
TV++ S NE K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298
BLAST of Sed0022787 vs. ExPASy TrEMBL
Match:
A0A5A7TZ60 (Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00750 PE=4 SV=1)
HSP 1 Score: 251.9 bits (642), Expect = 2.9e-63
Identity = 172/311 (55.31%), Postives = 200/311 (64.31%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTAPRPEIQ----ATAEPEVYPSAQATTNILQTSPARERA 60
M+NLPRFGRTW RFSSLPRP TA R E Q A EPEV+PSA TTN LQTSP ++R
Sbjct: 1 MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
Query: 61 SAISSPVRKYPSPPSSPIY--------------------------RAAATTSPKAFK-TA 120
+SSPV+K+PSPPSSP Y R +ATTSPK FK T
Sbjct: 61 PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
Query: 121 LSPPRSPP------------------LPRSP-RHEP---VRSRSPPEVQQKSVLYQKTTT 180
+SPP SPP LPRS R EP +R RSPPE++QK +LYQ TTT
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
Query: 181 AAEKAAKTEHR-ASEYSSGKPHQKQHQQ--QSDVINIKGENVGAVMHITESPSGGTEIHK 240
EK KT++R +Y + KP QKQH Q QSDVINIKG+NVGAVMHIT+S S G+EI K
Sbjct: 181 --EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQS-SDGSEILK 240
Query: 241 KNPMSTVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDP 256
K P +V NE+ KTNK S+S+ PGKSFMN+NFQGVNNSILYNSSL+HRDP
Sbjct: 241 KKP--SVGQSKENEE----KTNK----SNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDP 298
BLAST of Sed0022787 vs. ExPASy TrEMBL
Match:
A0A1S3AVJ6 (microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=3656 GN=LOC103483157 PE=4 SV=1)
HSP 1 Score: 251.9 bits (642), Expect = 2.9e-63
Identity = 172/311 (55.31%), Postives = 200/311 (64.31%), Query Frame = 0
Query: 1 MANLPRFGRTWQRFSSLPRPGTAPRPEIQ----ATAEPEVYPSAQATTNILQTSPARERA 60
M+NLPRFGRTW RFSSLPRP TA R E Q A EPEV+PSA TTN LQTSP ++R
Sbjct: 1 MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
Query: 61 SAISSPVRKYPSPPSSPIY--------------------------RAAATTSPKAFK-TA 120
+SSPV+K+PSPPSSP Y R +ATTSPK FK T
Sbjct: 61 PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
Query: 121 LSPPRSPP------------------LPRSP-RHEP---VRSRSPPEVQQKSVLYQKTTT 180
+SPP SPP LPRS R EP +R RSPPE++QK +LYQ TTT
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
Query: 181 AAEKAAKTEHR-ASEYSSGKPHQKQHQQ--QSDVINIKGENVGAVMHITESPSGGTEIHK 240
EK KT++R +Y + KP QKQH Q QSDVINIKG+NVGAVMHIT+S S G+EI K
Sbjct: 181 --EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQS-SDGSEILK 240
Query: 241 KNPMSTVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDP 256
K P +V NE+ KTNK S+S+ PGKSFMN+NFQGVNNSILYNSSL+HRDP
Sbjct: 241 KKP--SVGQSKENEE----KTNK----SNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDP 298
BLAST of Sed0022787 vs. TAIR 10
Match:
AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )
HSP 1 Score: 65.5 bits (158), Expect = 7.5e-11
Identity = 82/255 (32.16%), Postives = 117/255 (45.88%), Query Frame = 0
Query: 49 TSPARERASAISSPVRKYPSPPSSPIYRAAATTSPKAFKTALSPP---RSPPLPR--SPR 108
TSP + + P RK P+ P SP + + +TTS + S R P PR SP
Sbjct: 122 TSPPSPKEVQEALPPRK-PNSPPSPAHSSRSTTSESVKTRSPSESENHRKAPSPRVLSPY 181
Query: 109 HEPVR-SRSPPEVQQKSVL-YQKTTTAAEKAAKTEHRASEYS-----------------S 168
P S E QK++L +KT+ E ++ +Y+
Sbjct: 182 SLPASLLHSERETTQKNILTAEKTSQTHETNHHNQNHNHDYNQNHNYNQNHSYNQNQNHQ 241
Query: 169 GKPHQKQHQQQSD----------VINIKGENVGAVMHITESP----SGGTEIH------- 228
G +K H+Q S VI I GEN GAVM I SP +GG+ H
Sbjct: 242 GNNPKKMHRQPSSSDSENIMSTRVITIAGENKGAVMEILRSPQGNKTGGSGTHSSRVSHG 301
Query: 229 ---KKNPMSTVTHHSNNEDNDELKTNKKA-STSSSSLPGKSFMNTNFQGVNNSILYNSSL 255
K + + + S++E + KT K + +S+LP K+FMN+N Q +NNSI+YNS+
Sbjct: 302 TGEKGRRLQSSSSSSSDEGEGKKKTTKNVPNKGNSNLPMKAFMNSNVQMINNSIVYNSTA 361
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022945677.1 | 4.3e-77 | 62.38 | DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata] | [more] |
KAG6597058.1 | 4.3e-77 | 62.38 | hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023538835.1 | 4.0e-75 | 61.41 | proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo] | [more] |
XP_022974814.1 | 5.3e-75 | 61.41 | DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_... | [more] |
XP_022974813.1 | 5.8e-74 | 61.09 | DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1G1L2 | 2.1e-77 | 62.38 | DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=L... | [more] |
A0A6J1IEX0 | 2.5e-75 | 61.41 | DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=... | [more] |
A0A6J1IHF4 | 2.8e-74 | 61.09 | DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=... | [more] |
A0A5A7TZ60 | 2.9e-63 | 55.31 | Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. m... | [more] |
A0A1S3AVJ6 | 2.9e-63 | 55.31 | microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=365... | [more] |
Match Name | E-value | Identity | Description | |
AT2G46630.1 | 7.5e-11 | 32.16 | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP... | [more] |