Sed0022787 (gene) Chayote v1

Overview
NameSed0022787
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase II subunit 1-like
LocationLG02: 52491540 .. 52492581 (+)
RNA-Seq ExpressionSed0022787
SyntenySed0022787
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATCTTCCTCGTTTTGGGCGCACATGGCAGCGCTTCTCTTCCCTGCCCCGCCCTGGCACTGCCCCACGCCCTGAAATTCAGGCGACGGCGGAGCCGGAAGTGTATCCCTCCGCTCAGGCCACCACCAATATTCTCCAAACTTCCCCTGCTAGAGAAAGAGCTTCTGCTATCTCCTCTCCGGTCCGGAAATATCCCTCGCCCCCGTCTTCTCCGATCTACAGGGCCGCCGCCACCACTTCGCCCAAAGCTTTCAAAACGGCCCTTTCTCCGCCGCGATCGCCGCCTTTGCCACGCTCGCCCAGACATGAACCGGTTCGATCCAGGAGCCCACCAGAGGTTAACTCAATCCTTTCTAATTCGTATCAATTTTAAGTGTTCTTATAATAATAATCAAAAAGTTACTAATTTGAATCTTATTATATTGTGCTTGAATTAAAAATGGAATCTTCACAAAGTATATATAGTTGAAAATAAAATATTGTAACCAATATCCCATCTCATACAAAATGATCAATACTTCTCTTGGTAAAGTTTGAAGGACTTGGGTAATTAAATGACAAGTGATTATATACATATTGTTAAGCAGGTCCAGCAGAAAAGCGTCCTTTACCAGAAGACAACGACGGCGGCGGAGAAGGCAGCGAAAACCGAGCACCGAGCGTCGGAGTACAGTTCGGGCAAACCACACCAGAAGCAGCATCAGCAGCAAAGCGATGTTATAAACATAAAAGGGGAGAATGTCGGGGCCGTAATGCACATCACGGAATCCCCCTCGGGTGGCACAGAGATTCACAAGAAAAATCCAATGAGCACAGTAACCCACCACAGCAACAACGAAGACAACGATGAACTGAAAACAAACAAGAAAGCAAGCACCAGCTCTTCTAGTTTGCCTGGAAAGTCCTTCATGAACACCAATTTTCAAGGGGTCAACAATTCCATTCTCTACAATTCTTCTTTGACCCACCGTGATCCAGGCCTCCACCTTGCCTTCTCCAACAAGCCCCCCCATTCCCCTTCTCATTCAACCCACTAA

mRNA sequence

ATGGCAAATCTTCCTCGTTTTGGGCGCACATGGCAGCGCTTCTCTTCCCTGCCCCGCCCTGGCACTGCCCCACGCCCTGAAATTCAGGCGACGGCGGAGCCGGAAGTGTATCCCTCCGCTCAGGCCACCACCAATATTCTCCAAACTTCCCCTGCTAGAGAAAGAGCTTCTGCTATCTCCTCTCCGGTCCGGAAATATCCCTCGCCCCCGTCTTCTCCGATCTACAGGGCCGCCGCCACCACTTCGCCCAAAGCTTTCAAAACGGCCCTTTCTCCGCCGCGATCGCCGCCTTTGCCACGCTCGCCCAGACATGAACCGGTTCGATCCAGGAGCCCACCAGAGGTCCAGCAGAAAAGCGTCCTTTACCAGAAGACAACGACGGCGGCGGAGAAGGCAGCGAAAACCGAGCACCGAGCGTCGGAGTACAGTTCGGGCAAACCACACCAGAAGCAGCATCAGCAGCAAAGCGATGTTATAAACATAAAAGGGGAGAATGTCGGGGCCGTAATGCACATCACGGAATCCCCCTCGGGTGGCACAGAGATTCACAAGAAAAATCCAATGAGCACAGTAACCCACCACAGCAACAACGAAGACAACGATGAACTGAAAACAAACAAGAAAGCAAGCACCAGCTCTTCTAGTTTGCCTGGAAAGTCCTTCATGAACACCAATTTTCAAGGGGTCAACAATTCCATTCTCTACAATTCTTCTTTGACCCACCGTGATCCAGGCCTCCACCTTGCCTTCTCCAACAAGCCCCCCCATTCCCCTTCTCATTCAACCCACTAA

Coding sequence (CDS)

ATGGCAAATCTTCCTCGTTTTGGGCGCACATGGCAGCGCTTCTCTTCCCTGCCCCGCCCTGGCACTGCCCCACGCCCTGAAATTCAGGCGACGGCGGAGCCGGAAGTGTATCCCTCCGCTCAGGCCACCACCAATATTCTCCAAACTTCCCCTGCTAGAGAAAGAGCTTCTGCTATCTCCTCTCCGGTCCGGAAATATCCCTCGCCCCCGTCTTCTCCGATCTACAGGGCCGCCGCCACCACTTCGCCCAAAGCTTTCAAAACGGCCCTTTCTCCGCCGCGATCGCCGCCTTTGCCACGCTCGCCCAGACATGAACCGGTTCGATCCAGGAGCCCACCAGAGGTCCAGCAGAAAAGCGTCCTTTACCAGAAGACAACGACGGCGGCGGAGAAGGCAGCGAAAACCGAGCACCGAGCGTCGGAGTACAGTTCGGGCAAACCACACCAGAAGCAGCATCAGCAGCAAAGCGATGTTATAAACATAAAAGGGGAGAATGTCGGGGCCGTAATGCACATCACGGAATCCCCCTCGGGTGGCACAGAGATTCACAAGAAAAATCCAATGAGCACAGTAACCCACCACAGCAACAACGAAGACAACGATGAACTGAAAACAAACAAGAAAGCAAGCACCAGCTCTTCTAGTTTGCCTGGAAAGTCCTTCATGAACACCAATTTTCAAGGGGTCAACAATTCCATTCTCTACAATTCTTCTTTGACCCACCGTGATCCAGGCCTCCACCTTGCCTTCTCCAACAAGCCCCCCCATTCCCCTTCTCATTCAACCCACTAA

Protein sequence

MANLPRFGRTWQRFSSLPRPGTAPRPEIQATAEPEVYPSAQATTNILQTSPARERASAISSPVRKYPSPPSSPIYRAAATTSPKAFKTALSPPRSPPLPRSPRHEPVRSRSPPEVQQKSVLYQKTTTAAEKAAKTEHRASEYSSGKPHQKQHQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPMSTVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHLAFSNKPPHSPSHSTH
Homology
BLAST of Sed0022787 vs. NCBI nr
Match: XP_022945677.1 (DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata])

HSP 1 Score: 298.9 bits (764), Expect = 4.3e-77
Identity = 194/311 (62.38%), Postives = 214/311 (68.81%), Query Frame = 0

Query: 1   MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
           MANLPRFGRTW RFSSLPRPGTAPR   P   AT+EPEVYPSA  T N+LQTSP +ER+ 
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60

Query: 61  AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
            I+SPVRKYPSPP+SP YRAAA +                          SPK FKT   
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120

Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
           SPPRSP            P SP        RHEP   VR RSPPEVQQKSVLYQKTT  +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTT--S 180

Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
           EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S  TE HKK P 
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240

Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
            TV++ S NE        K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298

BLAST of Sed0022787 vs. NCBI nr
Match: KAG6597058.1 (hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 298.9 bits (764), Expect = 4.3e-77
Identity = 194/311 (62.38%), Postives = 214/311 (68.81%), Query Frame = 0

Query: 1   MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
           MANLPRFGRTW RFSSLPRPGTAPR   P   AT+EPEVYPSA  T N+LQTSP +ER+ 
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60

Query: 61  AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
            I+SPVRKYPSPP+SP YRAAA +                          SPK FKT   
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120

Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
           SPPRSP            P SP        RHEP   VR RSPPEVQQKSVLYQKTT  +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180

Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
           EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S  TE HKK P 
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240

Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
            TV++ S NE        K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298

BLAST of Sed0022787 vs. NCBI nr
Match: XP_023538835.1 (proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.4 bits (747), Expect = 4.0e-75
Identity = 191/311 (61.41%), Postives = 210/311 (67.52%), Query Frame = 0

Query: 1   MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
           MANLPRFGRTW RFSSLPRPGTAPR   P   A +EPEVYP    T N+LQTSP +ER+ 
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAAASEPEVYPPPPRTANVLQTSPIKERSP 60

Query: 61  AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
            I SPVRKYPSPP+SP YRAAA +                          SPK FKT   
Sbjct: 61  RIPSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRTSALASPKTFKTTYT 120

Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
           SPPRSP            P SP        RHEP   VR RSPPEVQQKSVLYQKTT  +
Sbjct: 121 SPPRSPAKHKYSTSTLQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180

Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
           EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S  TE HKK P 
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240

Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
            TV++ S NE        K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298

BLAST of Sed0022787 vs. NCBI nr
Match: XP_022974814.1 (DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_022974815.1 DNA-directed RNA polymerase II subunit 1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 292.0 bits (746), Expect = 5.3e-75
Identity = 191/311 (61.41%), Postives = 212/311 (68.17%), Query Frame = 0

Query: 1   MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
           MANLPRFGRTW RFSSLPRP TAPR   P   AT+EPEV+ SA  T N+LQTSP +ER+ 
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
            I+SPVRKYPSPP+SP YRAAA +                          SPK FKT   
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
           SPPRSP            P SP        RHEP   VR RSPPEVQQKSVLYQKTT  +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180

Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
           EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S  TE HKK P 
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240

Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
            TV++ S NE        K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298

BLAST of Sed0022787 vs. NCBI nr
Match: XP_022974813.1 (DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 288.5 bits (737), Expect = 5.8e-74
Identity = 190/311 (61.09%), Postives = 211/311 (67.85%), Query Frame = 0

Query: 1   MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
           MANLPRFGRTW RFSSLPRP TAPR   P   AT+EPEV+ SA  T N+LQTSP +ER+ 
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
            I+SPVRKY SPP+SP YRAAA +                          SPK FKT   
Sbjct: 61  RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
           SPPRSP            P SP        RHEP   VR RSPPEVQQKSVLYQKTT  +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180

Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
           EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S  TE HKK P 
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240

Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
            TV++ S NE        K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298

BLAST of Sed0022787 vs. ExPASy TrEMBL
Match: A0A6J1G1L2 (DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC111449836 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 2.1e-77
Identity = 194/311 (62.38%), Postives = 214/311 (68.81%), Query Frame = 0

Query: 1   MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
           MANLPRFGRTW RFSSLPRPGTAPR   P   AT+EPEVYPSA  T N+LQTSP +ER+ 
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60

Query: 61  AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
            I+SPVRKYPSPP+SP YRAAA +                          SPK FKT   
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120

Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
           SPPRSP            P SP        RHEP   VR RSPPEVQQKSVLYQKTT  +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTT--S 180

Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
           EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S  TE HKK P 
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240

Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
            TV++ S NE        K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298

BLAST of Sed0022787 vs. ExPASy TrEMBL
Match: A0A6J1IEX0 (DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.5e-75
Identity = 191/311 (61.41%), Postives = 212/311 (68.17%), Query Frame = 0

Query: 1   MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
           MANLPRFGRTW RFSSLPRP TAPR   P   AT+EPEV+ SA  T N+LQTSP +ER+ 
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
            I+SPVRKYPSPP+SP YRAAA +                          SPK FKT   
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
           SPPRSP            P SP        RHEP   VR RSPPEVQQKSVLYQKTT  +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180

Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
           EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S  TE HKK P 
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240

Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
            TV++ S NE        K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298

BLAST of Sed0022787 vs. ExPASy TrEMBL
Match: A0A6J1IHF4 (DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.8e-74
Identity = 190/311 (61.09%), Postives = 211/311 (67.85%), Query Frame = 0

Query: 1   MANLPRFGRTWQRFSSLPRPGTAPR---PEIQATAEPEVYPSAQATTNILQTSPARERAS 60
           MANLPRFGRTW RFSSLPRP TAPR   P   AT+EPEV+ SA  T N+LQTSP +ER+ 
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  AISSPVRKYPSPPSSPIYRAAATT--------------------------SPKAFKTA-L 120
            I+SPVRKY SPP+SP YRAAA +                          SPK FKT   
Sbjct: 61  RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSP----------PLPRSP--------RHEP---VRSRSPPEVQQKSVLYQKTTTAA 180
           SPPRSP            P SP        RHEP   VR RSPPEVQQKSVLYQKTT  +
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTT--S 180

Query: 181 EKAAKTEHRASEYSSGKPHQKQ-HQQQSDVINIKGENVGAVMHITESPSGGTEIHKKNPM 240
           EK AKT+HRASEYSSGKP QKQ HQQQSDVINIKGENVGAVMHIT+S S  TE HKK P 
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS-SDATETHKKKP- 240

Query: 241 STVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDPGLHL 260
            TV++ S NE        K ++ SSS++PGKSFMN+NFQGVNNSILYNSSL+HRDPGLHL
Sbjct: 241 -TVSYSSENE--------KDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHL 298

BLAST of Sed0022787 vs. ExPASy TrEMBL
Match: A0A5A7TZ60 (Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00750 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.9e-63
Identity = 172/311 (55.31%), Postives = 200/311 (64.31%), Query Frame = 0

Query: 1   MANLPRFGRTWQRFSSLPRPGTAPRPEIQ----ATAEPEVYPSAQATTNILQTSPARERA 60
           M+NLPRFGRTW RFSSLPRP TA R E Q    A  EPEV+PSA  TTN LQTSP ++R 
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  SAISSPVRKYPSPPSSPIY--------------------------RAAATTSPKAFK-TA 120
             +SSPV+K+PSPPSSP Y                          R +ATTSPK FK T 
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 LSPPRSPP------------------LPRSP-RHEP---VRSRSPPEVQQKSVLYQKTTT 180
           +SPP SPP                  LPRS  R EP   +R RSPPE++QK +LYQ TTT
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 AAEKAAKTEHR-ASEYSSGKPHQKQHQQ--QSDVINIKGENVGAVMHITESPSGGTEIHK 240
             EK  KT++R   +Y + KP QKQH Q  QSDVINIKG+NVGAVMHIT+S S G+EI K
Sbjct: 181 --EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQS-SDGSEILK 240

Query: 241 KNPMSTVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDP 256
           K P  +V     NE+    KTNK    S+S+ PGKSFMN+NFQGVNNSILYNSSL+HRDP
Sbjct: 241 KKP--SVGQSKENEE----KTNK----SNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDP 298

BLAST of Sed0022787 vs. ExPASy TrEMBL
Match: A0A1S3AVJ6 (microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=3656 GN=LOC103483157 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.9e-63
Identity = 172/311 (55.31%), Postives = 200/311 (64.31%), Query Frame = 0

Query: 1   MANLPRFGRTWQRFSSLPRPGTAPRPEIQ----ATAEPEVYPSAQATTNILQTSPARERA 60
           M+NLPRFGRTW RFSSLPRP TA R E Q    A  EPEV+PSA  TTN LQTSP ++R 
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  SAISSPVRKYPSPPSSPIY--------------------------RAAATTSPKAFK-TA 120
             +SSPV+K+PSPPSSP Y                          R +ATTSPK FK T 
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 LSPPRSPP------------------LPRSP-RHEP---VRSRSPPEVQQKSVLYQKTTT 180
           +SPP SPP                  LPRS  R EP   +R RSPPE++QK +LYQ TTT
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 AAEKAAKTEHR-ASEYSSGKPHQKQHQQ--QSDVINIKGENVGAVMHITESPSGGTEIHK 240
             EK  KT++R   +Y + KP QKQH Q  QSDVINIKG+NVGAVMHIT+S S G+EI K
Sbjct: 181 --EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQS-SDGSEILK 240

Query: 241 KNPMSTVTHHSNNEDNDELKTNKKASTSSSSLPGKSFMNTNFQGVNNSILYNSSLTHRDP 256
           K P  +V     NE+    KTNK    S+S+ PGKSFMN+NFQGVNNSILYNSSL+HRDP
Sbjct: 241 KKP--SVGQSKENEE----KTNK----SNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDP 298

BLAST of Sed0022787 vs. TAIR 10
Match: AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-11
Identity = 82/255 (32.16%), Postives = 117/255 (45.88%), Query Frame = 0

Query: 49  TSPARERASAISSPVRKYPSPPSSPIYRAAATTSPKAFKTALSPP---RSPPLPR--SPR 108
           TSP   +    + P RK P+ P SP + + +TTS      + S     R  P PR  SP 
Sbjct: 122 TSPPSPKEVQEALPPRK-PNSPPSPAHSSRSTTSESVKTRSPSESENHRKAPSPRVLSPY 181

Query: 109 HEPVR-SRSPPEVQQKSVL-YQKTTTAAEKAAKTEHRASEYS-----------------S 168
             P     S  E  QK++L  +KT+   E     ++   +Y+                  
Sbjct: 182 SLPASLLHSERETTQKNILTAEKTSQTHETNHHNQNHNHDYNQNHNYNQNHSYNQNQNHQ 241

Query: 169 GKPHQKQHQQQSD----------VINIKGENVGAVMHITESP----SGGTEIH------- 228
           G   +K H+Q S           VI I GEN GAVM I  SP    +GG+  H       
Sbjct: 242 GNNPKKMHRQPSSSDSENIMSTRVITIAGENKGAVMEILRSPQGNKTGGSGTHSSRVSHG 301

Query: 229 ---KKNPMSTVTHHSNNEDNDELKTNKKA-STSSSSLPGKSFMNTNFQGVNNSILYNSSL 255
              K   + + +  S++E   + KT K   +  +S+LP K+FMN+N Q +NNSI+YNS+ 
Sbjct: 302 TGEKGRRLQSSSSSSSDEGEGKKKTTKNVPNKGNSNLPMKAFMNSNVQMINNSIVYNSTA 361

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022945677.14.3e-7762.38DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata][more]
KAG6597058.14.3e-7762.38hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023538835.14.0e-7561.41proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo][more]
XP_022974814.15.3e-7561.41DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_... [more]
XP_022974813.15.8e-7461.09DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G1L22.1e-7762.38DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IEX02.5e-7561.41DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=... [more]
A0A6J1IHF42.8e-7461.09DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=... [more]
A0A5A7TZ602.9e-6355.31Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. m... [more]
A0A1S3AVJ62.9e-6355.31microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=365... [more]
Match NameE-valueIdentityDescription
AT2G46630.17.5e-1132.16unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 173..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..129
NoneNo IPR availablePANTHERPTHR33472OS01G0106600 PROTEINcoord: 117..257
NoneNo IPR availablePANTHERPTHR33472:SF1EXTENSIN-RELATEDcoord: 117..257

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022787.1Sed0022787.1mRNA