Sed0022697 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGTTGAGTGGAGAAATAGGGATGGATCACTTGTTTGCAAAGCAAAATCTCTCTGCCAGTTCTCAGATAGAGAACTTGGAAGAGTAACAAAACAAACACAAAAAATTATATAAGAGAGGTGTCTTATGAATTCTGATGTGAGGAAATGTGAACCTGCTTGATAGGCTAAATTTTTTCTCTAATCTTTTTCTATTTTTTTCACTCACCATCTTTTTTCTATCATTATCATTATCATTTTGGAGTTTGAAGAAGACATGAAAGGAACATACTTTTGTTTTATATTGACTCTGCAATTAGCTTGTTGGGTTTCTGCTGCAACCAGAACTTTTGCTCCAAATTATCCTCTCCCTCCTCATAAACAAGGTCTACTTGTTTTCTTCAGTTTTTTTTTTCTCTCAATTATTACATCTAATTGGCTATAGGCCTTCTTCCTTCACAGCATTTTTCACTCAACTTGCTTGTTGTTATGTTGCCAGGTCTTATCTCAAGCTCTTTGGATTCTAAACAGGTCAGCTCCCCTCCCACTGTGCTCTGCTCTGTTTGGTTCAAGCATCTTAGGGGCCTTTTAAGGCAAAAAAAATGAGAATGATTATGGGTGAATGAAAATATGGGAAATAGTACGATGAGTGGAGAGAATTATATATATGCCTTAGGAGAATAGAATAGAACGGTTACCAGTATTTGTGGTGTAGGAAATCATTACGAGAGAAACCATTATATGTTTTGAAGTGTAGAGAATGATTATTGAGATGAACTATTACCTATGTTTTGGATTGAGCGAATGGATTTCTGCGAATAAAATAGTGAGTATTACGAAAAATGAAAAGTAGTTATGGACGACGGTGAATAGTTAGTAGGAGAACGAAAAATTGTTATGTAGAAATCACAGTTGACGGCCCAAATGTGAGTGAGAAAATAAAATTAGTTATTCCTTTCATAATCATTCTCATTCTCCTGGCCTCAAATACTTATGTGTAGAAAAATCTCGTAGCCTCAATTCCATGGATATTTTCTTCTTTTTTTTTTTTGAAACAAGGATAACTATGTTCATTCATAATTTAATAGATATTTTCGAAAACATTATGAAGTAACTCATCTCTTTCGTCTTTTCAAACAAGTTTAAATTTCTGATTAGAAACTTTTTGAATGTGTTGAATTCATGAATACAGAAATGTTTATGTAAAGTCTTTCGTCCTTCACCCATTGTTGGGAATGTTGAATTTACAAACATATGAAAATGTCAATATGTCGTTTCTTGTCGATATTTCGTTTAAAATGAGTGTAGTAATTCATTTATCTTTGCGTGTAAAGGCTATTGTTGAAGGTGTAAATGAAGAAGAAATATTGTACAGAGGGATGAGGAAAGTAGGGTCAAGTGCACCAAGCTGTGAGCACAAGTGCTATGGATGCATTCCATGTGAAGCCTTTCAAGTGCCTACCAACAACAAGGGCAGCCATGTGAGGGTCCAATACACTAACTATGAACCTGAGGGTTGGAAATGCAAGTGTGGCCCTTTCTTTTACACCCCTTGATTCTAAACTTCAATTCTCTTTTTTTACTTGGTTTTTACCATCATTTCATTTCATTGTATAAAAGTTTGATTTAGAAAGGTAGATAAGTTATTATAAAAATGTGATGTTTTTGTTGAATAATATTTGGTTGAGTATGTATTTGGTGG ATGAGGTTGAGTGGAGAAATAGGGATGGATCACTTGTTTGCAAAGCAAAATCTCTCTGCCAGTTCTCAGATAGAGAACTTGGAAGAGTAACAAAACAAACACAAAAAATTATATAAGAGAGGTGTCTTATGAATTCTGATGTGAGGAAATGTGAACCTGCTTGATAGGCTAAATTTTTTCTCTAATCTTTTTCTATTTTTTTCACTCACCATCTTTTTTCTATCATTATCATTATCATTTTGGAGTTTGAAGAAGACATGAAAGGAACATACTTTTGTTTTATATTGACTCTGCAATTAGCTTGTTGGGTTTCTGCTGCAACCAGAACTTTTGCTCCAAATTATCCTCTCCCTCCTCATAAACAAGGTCTTATCTCAAGCTCTTTGGATTCTAAACAGGCTATTGTTGAAGGTGTAAATGAAGAAGAAATATTGTACAGAGGGATGAGGAAAGTAGGGTCAAGTGCACCAAGCTGTGAGCACAAGTGCTATGGATGCATTCCATGTGAAGCCTTTCAAGTGCCTACCAACAACAAGGGCAGCCATGTGAGGGTCCAATACACTAACTATGAACCTGAGGGTTGGAAATGCAAGTGTGGCCCTTTCTTTTACACCCCTTGATTCTAAACTTCAATTCTCTTTTTTTACTTGGTTTTTACCATCATTTCATTTCATTGTATAAAAGTTTGATTTAGAAAGGTAGATAAGTTATTATAAAAATGTGATGTTTTTGTTGAATAATATTTGGTTGAGTATGTATTTGGTGG ATGAAAGGAACATACTTTTGTTTTATATTGACTCTGCAATTAGCTTGTTGGGTTTCTGCTGCAACCAGAACTTTTGCTCCAAATTATCCTCTCCCTCCTCATAAACAAGGTCTTATCTCAAGCTCTTTGGATTCTAAACAGGCTATTGTTGAAGGTGTAAATGAAGAAGAAATATTGTACAGAGGGATGAGGAAAGTAGGGTCAAGTGCACCAAGCTGTGAGCACAAGTGCTATGGATGCATTCCATGTGAAGCCTTTCAAGTGCCTACCAACAACAAGGGCAGCCATGTGAGGGTCCAATACACTAACTATGAACCTGAGGGTTGGAAATGCAAGTGTGGCCCTTTCTTTTACACCCCTTGA MKGTYFCFILTLQLACWVSAATRTFAPNYPLPPHKQGLISSSLDSKQAIVEGVNEEEILYRGMRKVGSSAPSCEHKCYGCIPCEAFQVPTNNKGSHVRVQYTNYEPEGWKCKCGPFFYTP Homology
BLAST of Sed0022697 vs. NCBI nr
Match: XP_038904354.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 isoform X1 [Benincasa hispida]) HSP 1 Score: 196.4 bits (498), Expect = 1.4e-46 Identity = 96/122 (78.69%), Postives = 103/122 (84.43%), Query Frame = 0
BLAST of Sed0022697 vs. NCBI nr
Match: XP_008447616.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447617.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447618.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >KAA0036717.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa] >TYK03693.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa]) HSP 1 Score: 190.3 bits (482), Expect = 9.8e-45 Identity = 91/121 (75.21%), Postives = 99/121 (81.82%), Query Frame = 0
BLAST of Sed0022697 vs. NCBI nr
Match: XP_004146810.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652341.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652342.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >KAE8651286.1 hypothetical protein Csa_001818 [Cucumis sativus]) HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44 Identity = 94/122 (77.05%), Postives = 99/122 (81.15%), Query Frame = 0
BLAST of Sed0022697 vs. NCBI nr
Match: XP_022152671.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Momordica charantia] >XP_022152672.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Momordica charantia]) HSP 1 Score: 182.2 bits (461), Expect = 2.7e-42 Identity = 87/124 (70.16%), Postives = 98/124 (79.03%), Query Frame = 0
BLAST of Sed0022697 vs. NCBI nr
Match: XP_023523688.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 181.8 bits (460), Expect = 3.5e-42 Identity = 85/131 (64.89%), Postives = 98/131 (74.81%), Query Frame = 0
BLAST of Sed0022697 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 7.6e-16 Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 0
BLAST of Sed0022697 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 3.1e-09 Identity = 33/94 (35.11%), Postives = 43/94 (45.74%), Query Frame = 0
BLAST of Sed0022697 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08 Identity = 42/133 (31.58%), Postives = 58/133 (43.61%), Query Frame = 0
BLAST of Sed0022697 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 7.9e-05 Identity = 22/54 (40.74%), Postives = 29/54 (53.70%), Query Frame = 0
BLAST of Sed0022697 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 3.9e-04 Identity = 21/54 (38.89%), Postives = 25/54 (46.30%), Query Frame = 0
BLAST of Sed0022697 vs. ExPASy TrEMBL
Match: A0A1S3BIS6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103490030 PE=3 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 4.8e-45 Identity = 91/121 (75.21%), Postives = 99/121 (81.82%), Query Frame = 0
BLAST of Sed0022697 vs. ExPASy TrEMBL
Match: A0A5D3BVF6 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00550 PE=3 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 4.8e-45 Identity = 91/121 (75.21%), Postives = 99/121 (81.82%), Query Frame = 0
BLAST of Sed0022697 vs. ExPASy TrEMBL
Match: A0A6J1DIF6 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111020335 PE=3 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42 Identity = 87/124 (70.16%), Postives = 98/124 (79.03%), Query Frame = 0
BLAST of Sed0022697 vs. ExPASy TrEMBL
Match: A0A6J1KCN6 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492675 PE=3 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 2.2e-42 Identity = 87/133 (65.41%), Postives = 96/133 (72.18%), Query Frame = 0
BLAST of Sed0022697 vs. ExPASy TrEMBL
Match: A0A6J1GBB4 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452440 PE=3 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 8.4e-42 Identity = 85/130 (65.38%), Postives = 97/130 (74.62%), Query Frame = 0
BLAST of Sed0022697 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). ) HSP 1 Score: 84.7 bits (208), Expect = 5.4e-17 Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 0
BLAST of Sed0022697 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 62.8 bits (151), Expect = 2.2e-10 Identity = 33/94 (35.11%), Postives = 43/94 (45.74%), Query Frame = 0
BLAST of Sed0022697 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 59.7 bits (143), Expect = 1.9e-09 Identity = 42/133 (31.58%), Postives = 58/133 (43.61%), Query Frame = 0
BLAST of Sed0022697 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08 Identity = 28/67 (41.79%), Postives = 36/67 (53.73%), Query Frame = 0
BLAST of Sed0022697 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 48.1 bits (113), Expect = 5.6e-06 Identity = 22/54 (40.74%), Postives = 29/54 (53.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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