Sed0022661 (gene) Chayote v1

Overview
NameSed0022661
Typegene
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S30
LocationLG12: 29029477 .. 29031132 (-)
RNA-Seq ExpressionSed0022661
SyntenySed0022661
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTCTTTGGATCTCCAAGCGCCTTTGCAGCCGGAAGCTATCGAAGCAAGCAATCAGCCATGGGTGAGCAAAACCCTAACTCTTCCATTCTTGACCTTCATTCTTTCATGCTGCATTTAGCTTTCTTTGATGAATTTTGATTGCTTCATTTTTCTGAATGTATCTTTGAATCGCGTTTCTTTGCGGGTGGATCGATTTGCAGGAAAGGTTCACGGATCTTTGGCTCGTGCTGGGAAGGTGAGAGGTCAAACTCCGAAAGTCGCGAAGCAGGACAAGAAGAAGAAGCCCCGTGGTCGGGCTCACAAGCGTATGCAATACAATCGCAGATTCGTCACTGCCGGTTATTCATCCATCTCATTTGATAATCATTTTGTTTTTTATTTTAGAAATTTAAGTTTATTTTTATCCAAAATTTCTACCATGTTCCATCTTTCTTATGATGCATTAATAAGAAAATACGTGAATACTAATCAAATTTTTAAAATGCTTTTTTTGTTTTGAAATATTGGTTTTGTTTCCAAAAATATAGCTTAGATCAATGTTTTTGAGGCCATCGCCTTTCTTTGCCTATGGCCATCACCTTGCACATTAGGTACTGCGCCTCTAACGTAGTTAAGGCGAGGTCCTCGCCATTTTGCGCCCACATTGTATTTTTTTTTTATACAAATAATAATTTAATATTATGTTATATCTTATAATAACATAATTTTGTGATTTATTATTCTTTGAGTTAAAAGTATTTTTCCATATGAATTTGAAATTTTATGGGAATACACATATGTTTTATTATCAATTTATAAATGTGCCTCGCTTCACTCGGATTTTCCTTTTTATTGTCTCTCGTTTGAGGCGATCAAGGAGAGTATCGTCTTTTTATCGCCTTGTGCTTTGAAAACACAAGCTTAGATGTAATCATTCTATTTAGACTTAAATTTCTAAAAATAAAAATTAAATGGTTATCAAATGAGGCTATATTTTTCATTTTTAATTTTTGAAATTTAAGTTTGTATTCATGTTATCTTCTCTTGAGGAAGAGTGTAAATCCTAACCAAACATCATAAACCGAAACAAGTATTTGAAAGTTATTTTGTTTTAGATTTCTAAATTTTGTAAGCTTTTAAAATATATATGTAGACATCAAATTAATGAAAAACATGTATGGGAGTAGCAGTTATAAGGAACTGGGTTTAAACTTTTTCATTTTTCCAATGAATTGCCGTTTTAGAATTGATGCTATAGGTTTCTAGGGTATTAGAATTGTAATCCAACCACCATCTTTACGAATTATGCGATTGGAAATCTTTGTGACGAAATTAAGTATTTTGTATTATTTATTTGATTTTTGTAGTTGTTGGCTTTGGAAAGAAGAGAGGACCCAACTCCTCCGAGAAGTAAGCAAACAGCGAATCCATGGGAGCTTTGCTGGCTGGAAAATGATGGTTTTGTTCGTCGTTAAGTATTTTCTTCCGATTTCTCATAGATGTTTTAGTTCATTGAAGATTTTGGGTGCGTAAAAGATATTTATTTTGGCAATATATTAGAATTGATGTGATTTTGAATCTGAATTTTTGTTGGTTTCGCATCTCCTTCTTCGATATTCATATTATTATGCCTTATGCCTAGGATTTTATCAATGGTCATATTCATCTTCATTGAA

mRNA sequence

CGTCTTTGGATCTCCAAGCGCCTTTGCAGCCGGAAGCTATCGAAGCAAGCAATCAGCCATGGGAAAGGTTCACGGATCTTTGGCTCGTGCTGGGAAGGTGAGAGGTCAAACTCCGAAAGTCGCGAAGCAGGACAAGAAGAAGAAGCCCCGTGGTCGGGCTCACAAGCGTATGCAATACAATCGCAGATTCGTCACTGCCGTTGTTGGCTTTGGAAAGAAGAGAGGACCCAACTCCTCCGAGAAGTAAGCAAACAGCGAATCCATGGGAGCTTTGCTGGCTGGAAAATGATGGTTTTGTTCGTCGTTAAGTATTTTCTTCCGATTTCTCATAGATGTTTTAGTTCATTGAAGATTTTGGGTGCGTAAAAGATATTTATTTTGGCAATATATTAGAATTGATGTGATTTTGAATCTGAATTTTTGTTGGTTTCGCATCTCCTTCTTCGATATTCATATTATTATGCCTTATGCCTAGGATTTTATCAATGGTCATATTCATCTTCATTGAA

Coding sequence (CDS)

ATGGGAAAGGTTCACGGATCTTTGGCTCGTGCTGGGAAGGTGAGAGGTCAAACTCCGAAAGTCGCGAAGCAGGACAAGAAGAAGAAGCCCCGTGGTCGGGCTCACAAGCGTATGCAATACAATCGCAGATTCGTCACTGCCGTTGTTGGCTTTGGAAAGAAGAGAGGACCCAACTCCTCCGAGAAGTAA

Protein sequence

MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Homology
[Close]
BLAST of Sed0022661 vs. NCBI nr
Match: CAA2953813.1 (40s ribosomal s30 [Olea europaea subsp. europaea])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 48  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 107

Query: 61  EK 63
           EK
Sbjct: 108 EK 109

[Close]
BLAST of Sed0022661 vs. NCBI nr
Match: KAG6599498.1 (40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 50  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 109

Query: 61  EK 63
           EK
Sbjct: 110 EK 111

[Close]
BLAST of Sed0022661 vs. NCBI nr
Match: ESR64610.1 (hypothetical protein CICLE_v10009868mg [Citrus clementina] >GAY50417.1 hypothetical protein CUMW_126480 [Citrus unshiu])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 72  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 131

Query: 61  EK 63
           EK
Sbjct: 132 EK 133

[Close]
BLAST of Sed0022661 vs. NCBI nr
Match: PIA64528.1 (hypothetical protein AQUCO_00100184v1, partial [Aquilegia coerulea])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 42  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 101

Query: 61  EK 63
           EK
Sbjct: 102 EK 103

[Close]
BLAST of Sed0022661 vs. NCBI nr
Match: KAG7021908.1 (40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of Sed0022661 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of Sed0022661 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of Sed0022661 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of Sed0022661 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of Sed0022661 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]
BLAST of Sed0022661 vs. ExPASy TrEMBL
Match: A0A368PSS0 (40S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of Sed0022661 vs. ExPASy TrEMBL
Match: M5WRX6 (40S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of Sed0022661 vs. ExPASy TrEMBL
Match: A0A6J1KXK5 (40S ribosomal protein S30 OS=Cucurbita maxima OX=3661 GN=LOC111498467 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of Sed0022661 vs. ExPASy TrEMBL
Match: A0A7I8KYK5 (40S ribosomal protein S30 OS=Spirodela intermedia OX=51605 GN=SI7747_09012508 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of Sed0022661 vs. ExPASy TrEMBL
Match: C5XV41 (40S ribosomal protein S30 OS=Sorghum bicolor OX=4558 GN=SORBI_3004G335600 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of Sed0022661 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 119.8 bits (299), Expect = 7.9e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of Sed0022661 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 119.8 bits (299), Expect = 7.9e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

[Close]
BLAST of Sed0022661 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 119.8 bits (299), Expect = 7.9e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

The following BLAST results are available for this feature:
BLAST of Sed0022661 vs. NCBI nr
Match NameE-valueIdentityDescription
CAA2953813.11.0e-24100.0040s ribosomal s30 [Olea europaea subsp. europaea][more]
KAG6599498.11.0e-24100.0040S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. sororia][more]
ESR64610.11.0e-24100.00hypothetical protein CICLE_v10009868mg [Citrus clementina] >GAY50417.1 hypotheti... [more]
PIA64528.11.0e-24100.00hypothetical protein AQUCO_00100184v1, partial [Aquilegia coerulea][more]
KAG7021908.11.0e-24100.0040S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Sed0022661 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P496891.1e-2696.7740S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3[more]
P628665.5e-1879.3140S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1[more]
P628605.5e-1879.3140S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1[more]
P628615.5e-1879.3140S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1[more]
P628625.5e-1879.3140S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1[more]
BLAST of Sed0022661 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A368PSS04.8e-25100.0040S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV... [more]
M5WRX64.8e-25100.0040S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1[more]
A0A6J1KXK54.8e-25100.0040S ribosomal protein S30 OS=Cucurbita maxima OX=3661 GN=LOC111498467 PE=3 SV=1[more]
A0A7I8KYK54.8e-25100.0040S ribosomal protein S30 OS=Spirodela intermedia OX=51605 GN=SI7747_09012508 PE... [more]
C5XV414.8e-25100.0040S ribosomal protein S30 OS=Sorghum bicolor OX=4558 GN=SORBI_3004G335600 PE=3 S... [more]
BLAST of Sed0022661 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G19750.17.9e-2896.77Ribosomal protein S30 family protein [more]
AT4G29390.17.9e-2896.77Ribosomal protein S30 family protein [more]
AT5G56670.17.9e-2896.77Ribosomal protein S30 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006846Ribosomal protein S30PFAMPF04758Ribosomal_S30coord: 3..59
e-value: 1.4E-30
score: 105.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..40
NoneNo IPR availablePANTHERPTHR1265040S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBIcoord: 1..62
NoneNo IPR availablePANTHERPTHR12650:SF2840S RIBOSOMAL PROTEIN S30coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0022661.1Sed0022661.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome